Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 RNU6-934P-201ENST00000365154 107 ntBASIC1.12□□□□□ -2.23
HOXD9P28356 Y_RNA.588-201ENST00000391254 102 ntBASIC1.12□□□□□ -2.23
HOXD9P28356 RNU7-185P-201ENST00000459215 60 ntBASIC1.12□□□□□ -2.23
HOXD9P28356 snoU13.21-201ENST00000459368 105 ntBASIC1.12□□□□□ -2.23
HOXD9P28356 AC087343.1-201ENST00000477341 475 ntBASIC1.12□□□□□ -2.23
HOXD9P28356 RNA5SP404-201ENST00000517118 132 ntBASIC1.12□□□□□ -2.23
HOXD9P28356 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.12□□□□□ -2.23
HOXD9P28356 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.12□□□□□ -2.23
HOXD9P28356 Y_RNA.119-201ENST00000363301 96 ntBASIC1.11□□□□□ -2.23
HOXD9P28356 RNA5SP133-201ENST00000363368 119 ntBASIC1.11□□□□□ -2.23
HOXD9P28356 Y_RNA.342-201ENST00000365352 113 ntBASIC1.11□□□□□ -2.23
HOXD9P28356 MIR488-201ENST00000365739 83 ntBASIC1.11□□□□□ -2.23
HOXD9P28356 SNORD93-201ENST00000408813 74 ntBASIC1.11□□□□□ -2.23
HOXD9P28356 RNY4P30-201ENST00000410216 95 ntBASIC1.11□□□□□ -2.23
HOXD9P28356 AC109327.2-201ENST00000448339 378 ntBASIC1.11□□□□□ -2.23
HOXD9P28356 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.11□□□□□ -2.23
HOXD9P28356 MIR548Z-201ENST00000584743 97 ntBASIC1.11□□□□□ -2.23
HOXD9P28356 U6.109-201ENST00000636749 87 ntBASIC1.11□□□□□ -2.23
HOXD9P28356 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.1□□□□□ -2.23
HOXD9P28356 RNU6-813P-201ENST00000384691 107 ntBASIC1.1□□□□□ -2.23
HOXD9P28356 Y_RNA.567-201ENST00000384736 106 ntBASIC1.1□□□□□ -2.23
HOXD9P28356 RNU6-644P-201ENST00000391155 98 ntBASIC1.1□□□□□ -2.23
HOXD9P28356 RNU6-972P-201ENST00000391208 107 ntBASIC1.1□□□□□ -2.23
HOXD9P28356 SNORD83.1-201ENST00000411362 77 ntBASIC1.1□□□□□ -2.23
HOXD9P28356 RPS26P5-201ENST00000418544 335 ntBASIC1.1□□□□□ -2.23
HOXD9P28356 Y_RNA.705-201ENST00000516862 110 ntBASIC1.1□□□□□ -2.23
HOXD9P28356 AC023827.1-201ENST00000569247 97 ntBASIC1.1□□□□□ -2.23
HOXD9P28356 MALAT1.1-201ENST00000618249 95 ntBASIC1.1□□□□□ -2.23
HOXD9P28356 AC027335.2-201ENST00000624030 375 ntBASIC1.1□□□□□ -2.23
HOXD9P28356 MIR6767-201ENST00000637302 66 ntBASIC1.1□□□□□ -2.23
HOXD9P28356 RNU1-93P-201ENST00000364704 169 ntBASIC1.09□□□□□ -2.23
HOXD9P28356 Y_RNA.467-201ENST00000384297 102 ntBASIC1.09□□□□□ -2.23
HOXD9P28356 MIR1257-201ENST00000408490 117 ntBASIC1.09□□□□□ -2.23
HOXD9P28356 MIR1285-1-201ENST00000408593 84 ntBASIC1.09□□□□□ -2.23
HOXD9P28356 RNU7-61P-201ENST00000515897 61 ntBASIC1.09□□□□□ -2.23
HOXD9P28356 RNU6-1194P-201ENST00000516208 104 ntBASIC1.09□□□□□ -2.23
HOXD9P28356 MIR4500-201ENST00000579472 76 ntBASIC1.09□□□□□ -2.23
HOXD9P28356 AC090897.1-201ENST00000580909 226 ntBASIC1.09□□□□□ -2.23
HOXD9P28356 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.09□□□□□ -2.23
HOXD9P28356 AC023934.1-201ENST00000574529 2389 ntBASIC1.09□□□□□ -2.23
HOXD9P28356 RNU6-369P-201ENST00000362515 102 ntBASIC1.08□□□□□ -2.24
HOXD9P28356 RNU6-1244P-201ENST00000363614 108 ntBASIC1.08□□□□□ -2.24
HOXD9P28356 Y_RNA.191-201ENST00000363972 113 ntBASIC1.08□□□□□ -2.24
HOXD9P28356 Y_RNA.220-201ENST00000364244 109 ntBASIC1.08□□□□□ -2.24
HOXD9P28356 SNORD114-22-201ENST00000365423 72 ntBASIC1.08□□□□□ -2.24
HOXD9P28356 RNU6-571P-201ENST00000384128 107 ntBASIC1.08□□□□□ -2.24
HOXD9P28356 MIR125B2-201ENST00000385128 89 ntBASIC1.08□□□□□ -2.24
HOXD9P28356 RNU6-887P-201ENST00000410660 100 ntBASIC1.08□□□□□ -2.24
HOXD9P28356 AC002429.1-201ENST00000437672 148 ntBASIC1.08□□□□□ -2.24
HOXD9P28356 SPINT5P-201ENST00000448174 155 ntBASIC1.08□□□□□ -2.24
HOXD9P28356 SNRPGP12-201ENST00000449481 213 ntBASIC1.08□□□□□ -2.24
HOXD9P28356 MTND5P40-201ENST00000559945 246 ntBASIC1.08□□□□□ -2.24
HOXD9P28356 SNORD114-21-201ENST00000606412 72 ntBASIC1.08□□□□□ -2.24
HOXD9P28356 RNU6-86P-201ENST00000606534 107 ntBASIC1.08□□□□□ -2.24
HOXD9P28356 RNU4-58P-201ENST00000363192 141 ntBASIC1.07□□□□□ -2.24
HOXD9P28356 Y_RNA.290-201ENST00000364879 114 ntBASIC1.07□□□□□ -2.24
HOXD9P28356 RNU6-49P-201ENST00000384256 107 ntBASIC1.07□□□□□ -2.24
HOXD9P28356 SNORA25.16-201ENST00000516741 121 ntBASIC1.07□□□□□ -2.24
HOXD9P28356 AC020891.4-201ENST00000605745 93 ntBASIC1.07□□□□□ -2.24
HOXD9P28356 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.06□□□□□ -2.24
HOXD9P28356 RNU1-124P-201ENST00000363861 145 ntBASIC1.06□□□□□ -2.24
HOXD9P28356 RNU6-1131P-201ENST00000364955 107 ntBASIC1.06□□□□□ -2.24
HOXD9P28356 SNORD58A-201ENST00000383875 65 ntBASIC1.06□□□□□ -2.24
HOXD9P28356 RNU4-83P-201ENST00000410863 133 ntBASIC1.06□□□□□ -2.24
HOXD9P28356 RNU6-531P-201ENST00000516694 104 ntBASIC1.06□□□□□ -2.24
HOXD9P28356 RNU6-765P-201ENST00000516916 99 ntBASIC1.06□□□□□ -2.24
HOXD9P28356 RNU6-844P-201ENST00000517175 102 ntBASIC1.06□□□□□ -2.24
HOXD9P28356 MIR4771-2-201ENST00000577758 74 ntBASIC1.06□□□□□ -2.24
HOXD9P28356 MIR4771-1-201ENST00000582617 74 ntBASIC1.06□□□□□ -2.24
HOXD9P28356 MIR4452-201ENST00000583004 71 ntBASIC1.06□□□□□ -2.24
HOXD9P28356 MIR6082-201ENST00000613604 109 ntBASIC1.06□□□□□ -2.24
HOXD9P28356 U7.3-201ENST00000616123 62 ntBASIC1.06□□□□□ -2.24
HOXD9P28356 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
HOXD9P28356 RNU6-403P-201ENST00000363163 104 ntBASIC1.05□□□□□ -2.24
HOXD9P28356 RNU6-1125P-201ENST00000363601 107 ntBASIC1.05□□□□□ -2.24
HOXD9P28356 Y_RNA.224-201ENST00000364308 111 ntBASIC1.05□□□□□ -2.24
HOXD9P28356 RNU6-480P-201ENST00000384332 107 ntBASIC1.05□□□□□ -2.24
HOXD9P28356 MIR19B1-201ENST00000384829 87 ntBASIC1.05□□□□□ -2.24
HOXD9P28356 MIR4676-201ENST00000583078 72 ntBASIC1.05□□□□□ -2.24
HOXD9P28356 SNORD92-201ENST00000585078 85 ntBASIC1.05□□□□□ -2.24
HOXD9P28356 AC006254.2-201ENST00000603259 279 ntBASIC1.05□□□□□ -2.24
HOXD9P28356 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1.05□□□□□ -2.24
HOXD9P28356 MIR8066-201ENST00000617280 78 ntBASIC1.05□□□□□ -2.24
HOXD9P28356 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
HOXD9P28356 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
HOXD9P28356 Y_RNA.42-201ENST00000362660 108 ntBASIC1.04□□□□□ -2.24
HOXD9P28356 RNU4-38P-201ENST00000364472 129 ntBASIC1.04□□□□□ -2.24
HOXD9P28356 OR2A41P-201ENST00000473586 105 ntBASIC1.04□□□□□ -2.24
HOXD9P28356 RNU6-850P-201ENST00000516934 103 ntBASIC1.04□□□□□ -2.24
HOXD9P28356 RNU7-156P-201ENST00000517214 74 ntBASIC1.04□□□□□ -2.24
HOXD9P28356 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.04□□□□□ -2.24
HOXD9P28356 AC103810.7-201ENST00000607821 91 ntBASIC1.04□□□□□ -2.24
HOXD9P28356 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.04□□□□□ -2.24
HOXD9P28356 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.04□□□□□ -2.24
HOXD9P28356 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
HOXD9P28356 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
HOXD9P28356 MIR1-1-201ENST00000362147 71 ntBASIC1.03□□□□□ -2.24
HOXD9P28356 Y_RNA.13-201ENST00000362403 112 ntBASIC1.03□□□□□ -2.24
HOXD9P28356 SNORD116-10-201ENST00000363791 102 ntBASIC1.03□□□□□ -2.24
HOXD9P28356 RNU6-294P-201ENST00000364999 102 ntBASIC1.03□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 243.5 ms