Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 SNORA40.17-201ENST00000517256 115 ntBASIC-1.35□□□□□ -2.63
LIMS3P0CW19 RNU2-4P-201ENST00000606190 192 ntBASIC-1.35□□□□□ -2.63
LIMS3P0CW19 RNU6-86P-201ENST00000606534 107 ntBASIC-1.35□□□□□ -2.63
LIMS3P0CW19 SNORD115-25-201ENST00000362619 82 ntBASIC-1.36□□□□□ -2.63
LIMS3P0CW19 SNORD114-25-201ENST00000363742 72 ntBASIC-1.36□□□□□ -2.63
LIMS3P0CW19 RNU6-450P-201ENST00000364654 107 ntBASIC-1.36□□□□□ -2.63
LIMS3P0CW19 RNU6-1062P-201ENST00000383908 107 ntBASIC-1.36□□□□□ -2.63
LIMS3P0CW19 RNU6-472P-201ENST00000384299 107 ntBASIC-1.36□□□□□ -2.63
LIMS3P0CW19 MIR587-201ENST00000384845 96 ntBASIC-1.36□□□□□ -2.63
LIMS3P0CW19 snoU13.13-201ENST00000458842 104 ntBASIC-1.36□□□□□ -2.63
LIMS3P0CW19 SCARNA24.2-201ENST00000516968 130 ntBASIC-1.36□□□□□ -2.63
LIMS3P0CW19 Y_RNA.721-201ENST00000517207 102 ntBASIC-1.36□□□□□ -2.63
LIMS3P0CW19 AC007012.1-201ENST00000567192 175 ntBASIC-1.36□□□□□ -2.63
LIMS3P0CW19 AL365265.1-201ENST00000621045 234 ntBASIC-1.36□□□□□ -2.63
LIMS3P0CW19 Y_RNA.19-201ENST00000362462 99 ntBASIC-1.37□□□□□ -2.63
LIMS3P0CW19 Y_RNA.44-201ENST00000362676 108 ntBASIC-1.37□□□□□ -2.63
LIMS3P0CW19 Y_RNA.82-201ENST00000363000 102 ntBASIC-1.37□□□□□ -2.63
LIMS3P0CW19 Y_RNA.92-201ENST00000363043 102 ntBASIC-1.37□□□□□ -2.63
LIMS3P0CW19 Y_RNA.235-201ENST00000364412 102 ntBASIC-1.37□□□□□ -2.63
LIMS3P0CW19 Y_RNA.306-201ENST00000365015 102 ntBASIC-1.37□□□□□ -2.63
LIMS3P0CW19 Y_RNA.312-201ENST00000365089 102 ntBASIC-1.37□□□□□ -2.63
LIMS3P0CW19 Y_RNA.322-201ENST00000365151 102 ntBASIC-1.37□□□□□ -2.63
LIMS3P0CW19 RNU6-10P-201ENST00000384036 107 ntBASIC-1.37□□□□□ -2.63
LIMS3P0CW19 MIR518B-201ENST00000385127 83 ntBASIC-1.37□□□□□ -2.63
LIMS3P0CW19 MIR652-201ENST00000385278 98 ntBASIC-1.37□□□□□ -2.63
LIMS3P0CW19 Y_RNA.650-201ENST00000459002 102 ntBASIC-1.37□□□□□ -2.63
LIMS3P0CW19 RNY3P15-201ENST00000516297 97 ntBASIC-1.37□□□□□ -2.63
LIMS3P0CW19 RNU6-1338P-201ENST00000516328 91 ntBASIC-1.37□□□□□ -2.63
LIMS3P0CW19 RNU6-850P-201ENST00000516934 103 ntBASIC-1.37□□□□□ -2.63
LIMS3P0CW19 Y_RNA.777-201ENST00000516982 102 ntBASIC-1.37□□□□□ -2.63
LIMS3P0CW19 Y_RNA.771-201ENST00000598668 102 ntBASIC-1.37□□□□□ -2.63
LIMS3P0CW19 Y_RNA.789-201ENST00000622480 102 ntBASIC-1.37□□□□□ -2.63
LIMS3P0CW19 Y_RNA.35-201ENST00000362601 101 ntBASIC-1.38□□□□□ -2.63
LIMS3P0CW19 RNU6-1307P-201ENST00000391012 103 ntBASIC-1.38□□□□□ -2.63
LIMS3P0CW19 ELOCP20-201ENST00000422460 345 ntBASIC-1.38□□□□□ -2.63
LIMS3P0CW19 RNU6-1143P-201ENST00000516125 104 ntBASIC-1.38□□□□□ -2.63
LIMS3P0CW19 MTND5P18-201ENST00000445624 1801 ntBASIC-1.38□□□□□ -2.63
LIMS3P0CW19 Y_RNA.52-201ENST00000362760 96 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 Y_RNA.215-201ENST00000364204 112 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 RNU6-1163P-201ENST00000364516 107 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 Y_RNA.276-201ENST00000364732 109 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 Y_RNA.389-201ENST00000383924 113 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 MIR516A2-201ENST00000384888 90 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 MIR516A1-201ENST00000385033 90 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 RNU6-721P-201ENST00000410155 105 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 SNORD2-201ENST00000459163 69 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 RNU7-164P-201ENST00000459221 62 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 RNA5SP236-201ENST00000516169 116 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 RNA5SP67-201ENST00000516422 131 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 AC138907.4-201ENST00000570107 226 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 MIR3179-1-201ENST00000578940 84 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 MIR3179-2-201ENST00000579107 84 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 MIR3179-3-201ENST00000579566 84 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 MIR4744-201ENST00000581563 82 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 MIR4499-201ENST00000584834 69 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 AC009779.6-201ENST00000603972 165 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 AC021443.1-201ENST00000604478 211 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 MIR376B-201ENST00000614515 100 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 MIR3179-4-201ENST00000617599 84 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 AC090971.5-201ENST00000621102 293 ntBASIC-1.39□□□□□ -2.63
LIMS3P0CW19 Y_RNA.214-201ENST00000364201 112 ntBASIC-1.4□□□□□ -2.63
LIMS3P0CW19 Y_RNA.785-201ENST00000384290 109 ntBASIC-1.4□□□□□ -2.63
LIMS3P0CW19 AC113618.1-201ENST00000416747 285 ntBASIC-1.4□□□□□ -2.63
LIMS3P0CW19 FGF7P4-201ENST00000509595 295 ntBASIC-1.4□□□□□ -2.63
LIMS3P0CW19 uc_338.19-201ENST00000616808 99 ntBASIC-1.4□□□□□ -2.63
LIMS3P0CW19 Y_RNA.84-201ENST00000363011 104 ntBASIC-1.41□□□□□ -2.64
LIMS3P0CW19 Y_RNA.248-201ENST00000364501 109 ntBASIC-1.41□□□□□ -2.64
LIMS3P0CW19 RNU6-24P-201ENST00000384440 107 ntBASIC-1.41□□□□□ -2.64
LIMS3P0CW19 AC138393.2-201ENST00000414742 246 ntBASIC-1.41□□□□□ -2.64
LIMS3P0CW19 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-1.41□□□□□ -2.64
LIMS3P0CW19 AL442663.2-201ENST00000554385 511 ntBASIC-1.41□□□□□ -2.64
LIMS3P0CW19 AC145423.2-201ENST00000610631 239 ntBASIC-1.41□□□□□ -2.64
LIMS3P0CW19 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-1.41□□□□□ -2.64
LIMS3P0CW19 SNORD115-35-201ENST00000365122 82 ntBASIC-1.42□□□□□ -2.64
LIMS3P0CW19 Y_RNA.571-201ENST00000384753 98 ntBASIC-1.42□□□□□ -2.64
LIMS3P0CW19 Y_RNA.590-201ENST00000410140 107 ntBASIC-1.42□□□□□ -2.64
LIMS3P0CW19 Y_RNA.596-201ENST00000410462 109 ntBASIC-1.42□□□□□ -2.64
LIMS3P0CW19 AC087741.2-201ENST00000619415 172 ntBASIC-1.42□□□□□ -2.64
LIMS3P0CW19 RNU6-973P-201ENST00000364690 107 ntBASIC-1.43□□□□□ -2.64
LIMS3P0CW19 RNU6-806P-201ENST00000365147 105 ntBASIC-1.43□□□□□ -2.64
LIMS3P0CW19 Y_RNA.447-201ENST00000384184 113 ntBASIC-1.43□□□□□ -2.64
LIMS3P0CW19 SNORA49-201ENST00000386157 136 ntBASIC-1.43□□□□□ -2.64
LIMS3P0CW19 Y_RNA.579-201ENST00000390939 94 ntBASIC-1.43□□□□□ -2.64
LIMS3P0CW19 RNU6-651P-201ENST00000411040 105 ntBASIC-1.43□□□□□ -2.64
LIMS3P0CW19 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC-1.43□□□□□ -2.64
LIMS3P0CW19 RNU6-274P-201ENST00000459566 107 ntBASIC-1.43□□□□□ -2.64
LIMS3P0CW19 RNU7-123P-201ENST00000515911 60 ntBASIC-1.43□□□□□ -2.64
LIMS3P0CW19 RNU6-240P-201ENST00000516098 97 ntBASIC-1.43□□□□□ -2.64
LIMS3P0CW19 RNU6-578P-201ENST00000390980 103 ntBASIC-1.44□□□□□ -2.64
LIMS3P0CW19 RNU6-1109P-201ENST00000391187 107 ntBASIC-1.44□□□□□ -2.64
LIMS3P0CW19 Y_RNA.679-201ENST00000516416 91 ntBASIC-1.44□□□□□ -2.64
LIMS3P0CW19 U6atac.1-201ENST00000616025 117 ntBASIC-1.44□□□□□ -2.64
LIMS3P0CW19 TRDV1-202ENST00000621643 102 ntBASIC-1.44□□□□□ -2.64
LIMS3P0CW19 Y_RNA.220-201ENST00000364244 109 ntBASIC-1.45□□□□□ -2.64
LIMS3P0CW19 Y_RNA.360-201ENST00000365512 102 ntBASIC-1.45□□□□□ -2.64
LIMS3P0CW19 Y_RNA.395-201ENST00000383945 109 ntBASIC-1.45□□□□□ -2.64
LIMS3P0CW19 MIR216B-201ENST00000390186 82 ntBASIC-1.45□□□□□ -2.64
LIMS3P0CW19 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-1.45□□□□□ -2.64
LIMS3P0CW19 Y_RNA.659-201ENST00000515994 113 ntBASIC-1.45□□□□□ -2.64
LIMS3P0CW19 SCARNA17.3-201ENST00000516381 125 ntBASIC-1.45□□□□□ -2.64
Retrieved 100 of 98,524 protein–RNA pairs in 828.7 ms