Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MIR3064-201ENST00000581130 66 ntBASIC2.03□□□□□ -2.08
HIF3AQ9Y2N7 MIR6516-201ENST00000630554 81 ntBASIC2.03□□□□□ -2.08
HIF3AQ9Y2N7 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
HIF3AQ9Y2N7 RNU6-403P-201ENST00000363163 104 ntBASIC2.02□□□□□ -2.09
HIF3AQ9Y2N7 Y_RNA.532-201ENST00000384590 113 ntBASIC2.02□□□□□ -2.09
HIF3AQ9Y2N7 SNORD93-201ENST00000408813 74 ntBASIC2.02□□□□□ -2.09
HIF3AQ9Y2N7 AC104435.1-201ENST00000483483 166 ntBASIC2.02□□□□□ -2.09
HIF3AQ9Y2N7 RN7SL274P-201ENST00000492268 272 ntBASIC2.02□□□□□ -2.09
HIF3AQ9Y2N7 SNORA44.1-201ENST00000517031 108 ntBASIC2.02□□□□□ -2.09
HIF3AQ9Y2N7 MIR4491-201ENST00000581087 68 ntBASIC2.02□□□□□ -2.09
HIF3AQ9Y2N7 RNU6-957P-201ENST00000363652 99 ntBASIC2.01□□□□□ -2.09
HIF3AQ9Y2N7 SNORA25.9-201ENST00000365087 128 ntBASIC2.01□□□□□ -2.09
HIF3AQ9Y2N7 Y_RNA.491-201ENST00000384417 107 ntBASIC2.01□□□□□ -2.09
HIF3AQ9Y2N7 MT-TF-201ENST00000387314 71 ntBASIC2.01□□□□□ -2.09
HIF3AQ9Y2N7 SNORD90-201ENST00000391145 111 ntBASIC2.01□□□□□ -2.09
HIF3AQ9Y2N7 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
HIF3AQ9Y2N7 SNORD63B-201ENST00000411005 70 ntBASIC2.01□□□□□ -2.09
HIF3AQ9Y2N7 HMGN2P19-201ENST00000425149 265 ntBASIC2.01□□□□□ -2.09
HIF3AQ9Y2N7 AL133373.1-201ENST00000497098 94 ntBASIC2.01□□□□□ -2.09
HIF3AQ9Y2N7 FGF7P7-201ENST00000514120 227 ntBASIC2.01□□□□□ -2.09
HIF3AQ9Y2N7 MIR8063-201ENST00000621930 81 ntBASIC2.01□□□□□ -2.09
HIF3AQ9Y2N7 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
HIF3AQ9Y2N7 MIR103A2-201ENST00000362154 78 ntBASIC2□□□□□ -2.09
HIF3AQ9Y2N7 RNU6-53P-201ENST00000365367 106 ntBASIC2□□□□□ -2.09
HIF3AQ9Y2N7 SNORA70B-201ENST00000384210 135 ntBASIC2□□□□□ -2.09
HIF3AQ9Y2N7 SNORA67.4-201ENST00000384688 142 ntBASIC2□□□□□ -2.09
HIF3AQ9Y2N7 MT-TN-201ENST00000387400 73 ntBASIC2□□□□□ -2.09
HIF3AQ9Y2N7 MIR1185-1-201ENST00000408598 86 ntBASIC2□□□□□ -2.09
HIF3AQ9Y2N7 snoU13.9-201ENST00000458927 103 ntBASIC2□□□□□ -2.09
HIF3AQ9Y2N7 MIR514B-201ENST00000516774 80 ntBASIC2□□□□□ -2.09
HIF3AQ9Y2N7 AC103810.8-201ENST00000607347 118 ntBASIC2□□□□□ -2.09
HIF3AQ9Y2N7 AL359851.1-201ENST00000569460 4997 ntBASIC2□□□□□ -2.09
HIF3AQ9Y2N7 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
HIF3AQ9Y2N7 RNU4-58P-201ENST00000363192 141 ntBASIC1.99□□□□□ -2.09
HIF3AQ9Y2N7 U8.13-201ENST00000390842 128 ntBASIC1.99□□□□□ -2.09
HIF3AQ9Y2N7 SNORA48.3-201ENST00000391081 134 ntBASIC1.99□□□□□ -2.09
HIF3AQ9Y2N7 RPL23AP42-201ENST00000471152 471 ntBASIC1.99□□□□□ -2.09
HIF3AQ9Y2N7 RPL30P7-201ENST00000479312 323 ntBASIC1.99□□□□□ -2.09
HIF3AQ9Y2N7 RNA5SP200-201ENST00000516360 103 ntBASIC1.99□□□□□ -2.09
HIF3AQ9Y2N7 RNU11-2P-201ENST00000516898 142 ntBASIC1.99□□□□□ -2.09
HIF3AQ9Y2N7 AP003716.2-201ENST00000528260 108 ntBASIC1.99□□□□□ -2.09
HIF3AQ9Y2N7 SNORD92-201ENST00000585078 85 ntBASIC1.99□□□□□ -2.09
HIF3AQ9Y2N7 MIR302D-201ENST00000362275 68 ntBASIC1.98□□□□□ -2.09
HIF3AQ9Y2N7 U8.2-201ENST00000363156 134 ntBASIC1.98□□□□□ -2.09
HIF3AQ9Y2N7 RNU6-411P-201ENST00000384451 107 ntBASIC1.98□□□□□ -2.09
HIF3AQ9Y2N7 MIR221-201ENST00000385135 110 ntBASIC1.98□□□□□ -2.09
HIF3AQ9Y2N7 MIR676-201ENST00000390702 67 ntBASIC1.98□□□□□ -2.09
HIF3AQ9Y2N7 MIR548U-201ENST00000390728 81 ntBASIC1.98□□□□□ -2.09
HIF3AQ9Y2N7 SNORD77.2-201ENST00000391045 68 ntBASIC1.98□□□□□ -2.09
HIF3AQ9Y2N7 Y_RNA.588-201ENST00000391254 102 ntBASIC1.98□□□□□ -2.09
HIF3AQ9Y2N7 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.98□□□□□ -2.09
HIF3AQ9Y2N7 AC015818.7-201ENST00000428754 109 ntBASIC1.98□□□□□ -2.09
HIF3AQ9Y2N7 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
HIF3AQ9Y2N7 RNU6-208P-201ENST00000362431 107 ntBASIC1.97□□□□□ -2.09
HIF3AQ9Y2N7 MIR30A-201ENST00000385092 71 ntBASIC1.97□□□□□ -2.09
HIF3AQ9Y2N7 RNU7-195P-201ENST00000458793 62 ntBASIC1.97□□□□□ -2.09
HIF3AQ9Y2N7 Y_RNA.660-201ENST00000516002 120 ntBASIC1.97□□□□□ -2.09
HIF3AQ9Y2N7 RNU6-1015P-201ENST00000517121 99 ntBASIC1.97□□□□□ -2.09
HIF3AQ9Y2N7 MIR6132-201ENST00000622083 109 ntBASIC1.97□□□□□ -2.09
HIF3AQ9Y2N7 MIR664A-201ENST00000626086 82 ntBASIC1.97□□□□□ -2.09
HIF3AQ9Y2N7 RNA5SP289-201ENST00000362332 137 ntBASIC1.96□□□□□ -2.1
HIF3AQ9Y2N7 SNORD33-201ENST00000362761 85 ntBASIC1.96□□□□□ -2.1
HIF3AQ9Y2N7 SNORD1A-201ENST00000364968 72 ntBASIC1.96□□□□□ -2.1
HIF3AQ9Y2N7 RNU1-36P-201ENST00000365130 165 ntBASIC1.96□□□□□ -2.1
HIF3AQ9Y2N7 SNORD100-201ENST00000408573 76 ntBASIC1.96□□□□□ -2.1
HIF3AQ9Y2N7 HMGN2P23-201ENST00000456759 269 ntBASIC1.96□□□□□ -2.1
HIF3AQ9Y2N7 snoU13.21-201ENST00000459368 105 ntBASIC1.96□□□□□ -2.1
HIF3AQ9Y2N7 RNU6-70P-201ENST00000516438 60 ntBASIC1.96□□□□□ -2.1
HIF3AQ9Y2N7 RNU6-448P-201ENST00000517052 107 ntBASIC1.96□□□□□ -2.1
HIF3AQ9Y2N7 AC019176.1-201ENST00000518519 225 ntBASIC1.96□□□□□ -2.1
HIF3AQ9Y2N7 AC013244.2-201ENST00000603396 103 ntBASIC1.96□□□□□ -2.1
HIF3AQ9Y2N7 SNRPGP19-201ENST00000603826 189 ntBASIC1.96□□□□□ -2.1
HIF3AQ9Y2N7 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.96□□□□□ -2.1
HIF3AQ9Y2N7 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
HIF3AQ9Y2N7 MIR101-2-201ENST00000362195 79 ntBASIC1.95□□□□□ -2.1
HIF3AQ9Y2N7 RNA5SP264-201ENST00000363115 107 ntBASIC1.95□□□□□ -2.1
HIF3AQ9Y2N7 TRAJ51-201ENST00000504127 63 ntBASIC1.95□□□□□ -2.1
HIF3AQ9Y2N7 AC079140.2-201ENST00000506193 142 ntBASIC1.95□□□□□ -2.1
HIF3AQ9Y2N7 RNU6-807P-201ENST00000516805 107 ntBASIC1.95□□□□□ -2.1
HIF3AQ9Y2N7 MIR5002-201ENST00000584713 97 ntBASIC1.95□□□□□ -2.1
HIF3AQ9Y2N7 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.95□□□□□ -2.1
HIF3AQ9Y2N7 AC023934.1-201ENST00000574529 2389 ntBASIC1.95□□□□□ -2.1
HIF3AQ9Y2N7 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
HIF3AQ9Y2N7 MIR377-201ENST00000362145 69 ntBASIC1.94□□□□□ -2.1
HIF3AQ9Y2N7 RNA5SP37-201ENST00000365420 130 ntBASIC1.94□□□□□ -2.1
HIF3AQ9Y2N7 Y_RNA.536-201ENST00000384621 113 ntBASIC1.94□□□□□ -2.1
HIF3AQ9Y2N7 AL606490.4-201ENST00000423117 127 ntBASIC1.94□□□□□ -2.1
HIF3AQ9Y2N7 RNU6-1194P-201ENST00000516208 104 ntBASIC1.94□□□□□ -2.1
HIF3AQ9Y2N7 AL096840.1-201ENST00000603287 93 ntBASIC1.94□□□□□ -2.1
HIF3AQ9Y2N7 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.94□□□□□ -2.1
HIF3AQ9Y2N7 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
HIF3AQ9Y2N7 ZNF209P-201ENST00000593450 2304 ntBASIC1.94□□□□□ -2.1
HIF3AQ9Y2N7 RNU6-1065P-201ENST00000384513 106 ntBASIC1.93□□□□□ -2.1
HIF3AQ9Y2N7 MIR518E-201ENST00000385252 88 ntBASIC1.93□□□□□ -2.1
HIF3AQ9Y2N7 RNA5SP489-201ENST00000410986 109 ntBASIC1.93□□□□□ -2.1
HIF3AQ9Y2N7 AC079804.2-201ENST00000490376 200 ntBASIC1.93□□□□□ -2.1
HIF3AQ9Y2N7 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.93□□□□□ -2.1
HIF3AQ9Y2N7 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.93□□□□□ -2.1
HIF3AQ9Y2N7 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
HIF3AQ9Y2N7 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 200 ms