Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 SNORD114-10-201ENST00000363409 72 ntBASIC0.69□□□□□ -2.3
LIMA1Q9UHB6 Y_RNA.213-201ENST00000364178 111 ntBASIC0.69□□□□□ -2.3
LIMA1Q9UHB6 Y_RNA.344-201ENST00000365381 112 ntBASIC0.69□□□□□ -2.3
LIMA1Q9UHB6 RNU6-364P-201ENST00000384387 107 ntBASIC0.69□□□□□ -2.3
LIMA1Q9UHB6 MIR518E-201ENST00000385252 88 ntBASIC0.69□□□□□ -2.3
LIMA1Q9UHB6 RNU6-1321P-201ENST00000390905 107 ntBASIC0.69□□□□□ -2.3
LIMA1Q9UHB6 RNU7-156P-201ENST00000517214 74 ntBASIC0.69□□□□□ -2.3
LIMA1Q9UHB6 MIR1255B1-201ENST00000636325 63 ntBASIC0.69□□□□□ -2.3
LIMA1Q9UHB6 AC132825.6-201ENST00000638861 357 ntBASIC0.69□□□□□ -2.3
LIMA1Q9UHB6 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.69□□□□□ -2.3
LIMA1Q9UHB6 Y_RNA.13-201ENST00000362403 112 ntBASIC0.68□□□□□ -2.3
LIMA1Q9UHB6 Y_RNA.353-201ENST00000365440 108 ntBASIC0.68□□□□□ -2.3
LIMA1Q9UHB6 MIR548D2-201ENST00000384955 97 ntBASIC0.68□□□□□ -2.3
LIMA1Q9UHB6 RNU4-83P-201ENST00000410863 133 ntBASIC0.68□□□□□ -2.3
LIMA1Q9UHB6 RPS29P1-201ENST00000465274 159 ntBASIC0.68□□□□□ -2.3
LIMA1Q9UHB6 RNA5SP220-201ENST00000516298 104 ntBASIC0.68□□□□□ -2.3
LIMA1Q9UHB6 RNU6-406P-201ENST00000516470 107 ntBASIC0.68□□□□□ -2.3
LIMA1Q9UHB6 SNORA25.16-201ENST00000516741 121 ntBASIC0.68□□□□□ -2.3
LIMA1Q9UHB6 AC138749.4-201ENST00000563970 127 ntBASIC0.68□□□□□ -2.3
LIMA1Q9UHB6 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.67□□□□□ -2.3
LIMA1Q9UHB6 Y_RNA.346-201ENST00000365385 112 ntBASIC0.67□□□□□ -2.3
LIMA1Q9UHB6 SNORA36.2-201ENST00000384004 127 ntBASIC0.67□□□□□ -2.3
LIMA1Q9UHB6 Y_RNA.508-201ENST00000384502 114 ntBASIC0.67□□□□□ -2.3
LIMA1Q9UHB6 Y_RNA.563-201ENST00000384707 108 ntBASIC0.67□□□□□ -2.3
LIMA1Q9UHB6 SNORD77B-201ENST00000391112 67 ntBASIC0.67□□□□□ -2.3
LIMA1Q9UHB6 RNU4-61P-201ENST00000411243 107 ntBASIC0.67□□□□□ -2.3
LIMA1Q9UHB6 RPL39P25-201ENST00000449384 154 ntBASIC0.67□□□□□ -2.3
LIMA1Q9UHB6 snoU13.18-201ENST00000459483 104 ntBASIC0.67□□□□□ -2.3
LIMA1Q9UHB6 AL590095.2-201ENST00000604136 117 ntBASIC0.67□□□□□ -2.3
LIMA1Q9UHB6 MIR6082-201ENST00000613604 109 ntBASIC0.67□□□□□ -2.3
LIMA1Q9UHB6 MIR6734-201ENST00000621166 68 ntBASIC0.67□□□□□ -2.3
LIMA1Q9UHB6 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 RNU6-403P-201ENST00000363163 104 ntBASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 RNA5SP133-201ENST00000363368 119 ntBASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 RNU6-42P-201ENST00000384165 107 ntBASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 Y_RNA.448-201ENST00000384185 108 ntBASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 RNU6-447P-201ENST00000410293 104 ntBASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 RNU6-1118P-201ENST00000410382 104 ntBASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 RNU6-1076P-201ENST00000410397 104 ntBASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 RNU6-355P-201ENST00000410427 104 ntBASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 RNU6-791P-201ENST00000410467 104 ntBASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 RNU6-705P-201ENST00000410601 104 ntBASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 RNU6-1100P-201ENST00000410691 104 ntBASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 RNU6-860P-201ENST00000410860 104 ntBASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 RNU6-1217P-201ENST00000411276 104 ntBASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 RNU6-785P-201ENST00000411324 104 ntBASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 AL353813.1-201ENST00000440700 253 ntBASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 RNU7-2P-201ENST00000516096 62 ntBASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 MIR3612-201ENST00000579753 87 ntBASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 AC090897.1-201ENST00000580909 226 ntBASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 U6.90-201ENST00000614007 104 ntBASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 U6.70-201ENST00000620287 104 ntBASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 AL035470.1-201ENST00000622571 220 ntBASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 U6.109-201ENST00000636749 87 ntBASIC0.66□□□□□ -2.3
LIMA1Q9UHB6 Y_RNA.116-201ENST00000363292 103 ntBASIC0.65□□□□□ -2.31
LIMA1Q9UHB6 SNORD115-35-201ENST00000365122 82 ntBASIC0.65□□□□□ -2.31
LIMA1Q9UHB6 Y_RNA.362-201ENST00000365518 110 ntBASIC0.65□□□□□ -2.31
LIMA1Q9UHB6 RNY1P8-201ENST00000383970 114 ntBASIC0.65□□□□□ -2.31
LIMA1Q9UHB6 RNU6-22P-201ENST00000384355 107 ntBASIC0.65□□□□□ -2.31
LIMA1Q9UHB6 MIR508-201ENST00000384857 115 ntBASIC0.65□□□□□ -2.31
LIMA1Q9UHB6 AC008267.6-201ENST00000441664 139 ntBASIC0.65□□□□□ -2.31
LIMA1Q9UHB6 CYP3A137P-201ENST00000562436 69 ntBASIC0.65□□□□□ -2.31
LIMA1Q9UHB6 AC133485.1-201ENST00000567176 124 ntBASIC0.65□□□□□ -2.31
LIMA1Q9UHB6 AC138907.6-201ENST00000568401 126 ntBASIC0.65□□□□□ -2.31
LIMA1Q9UHB6 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.65□□□□□ -2.31
LIMA1Q9UHB6 RNY1P2-201ENST00000364820 117 ntBASIC0.64□□□□□ -2.31
LIMA1Q9UHB6 RNU4-45P-201ENST00000365469 141 ntBASIC0.64□□□□□ -2.31
LIMA1Q9UHB6 SNORA72.6-201ENST00000384520 129 ntBASIC0.64□□□□□ -2.31
LIMA1Q9UHB6 Y_RNA.549-201ENST00000384657 102 ntBASIC0.64□□□□□ -2.31
LIMA1Q9UHB6 MIR92A1-201ENST00000385233 78 ntBASIC0.64□□□□□ -2.31
LIMA1Q9UHB6 RNU6-1168P-201ENST00000390831 104 ntBASIC0.64□□□□□ -2.31
LIMA1Q9UHB6 RNU6-733P-201ENST00000410759 104 ntBASIC0.64□□□□□ -2.31
LIMA1Q9UHB6 RNU7-48P-201ENST00000458875 63 ntBASIC0.64□□□□□ -2.31
LIMA1Q9UHB6 RNU6-531P-201ENST00000516694 104 ntBASIC0.64□□□□□ -2.31
LIMA1Q9UHB6 RNU6-765P-201ENST00000516916 99 ntBASIC0.64□□□□□ -2.31
LIMA1Q9UHB6 MIR376B-201ENST00000614515 100 ntBASIC0.64□□□□□ -2.31
LIMA1Q9UHB6 U6.95-201ENST00000636931 70 ntBASIC0.64□□□□□ -2.31
LIMA1Q9UHB6 MIR18A-201ENST00000362310 71 ntBASIC0.63□□□□□ -2.31
LIMA1Q9UHB6 RNU6-1117P-201ENST00000384525 104 ntBASIC0.63□□□□□ -2.31
LIMA1Q9UHB6 MIR140-201ENST00000385282 100 ntBASIC0.63□□□□□ -2.31
LIMA1Q9UHB6 SNORD100-201ENST00000408573 76 ntBASIC0.63□□□□□ -2.31
LIMA1Q9UHB6 RNU6-521P-201ENST00000516663 105 ntBASIC0.63□□□□□ -2.31
LIMA1Q9UHB6 MTND5P34-201ENST00000568888 325 ntBASIC0.63□□□□□ -2.31
LIMA1Q9UHB6 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.62□□□□□ -2.31
LIMA1Q9UHB6 Y_RNA.119-201ENST00000363301 96 ntBASIC0.62□□□□□ -2.31
LIMA1Q9UHB6 RNY4P6-201ENST00000363667 96 ntBASIC0.62□□□□□ -2.31
LIMA1Q9UHB6 RNA5SP205-201ENST00000364653 136 ntBASIC0.62□□□□□ -2.31
LIMA1Q9UHB6 RNU6-945P-201ENST00000383947 107 ntBASIC0.62□□□□□ -2.31
LIMA1Q9UHB6 MIR34C-201ENST00000384831 77 ntBASIC0.62□□□□□ -2.31
LIMA1Q9UHB6 MIR548A1-201ENST00000385041 97 ntBASIC0.62□□□□□ -2.31
LIMA1Q9UHB6 MIR759-201ENST00000390224 91 ntBASIC0.62□□□□□ -2.31
LIMA1Q9UHB6 Y_RNA.649-201ENST00000459077 103 ntBASIC0.62□□□□□ -2.31
LIMA1Q9UHB6 AC002350.1-201ENST00000490759 375 ntBASIC0.62□□□□□ -2.31
LIMA1Q9UHB6 RNU6-448P-201ENST00000517052 107 ntBASIC0.62□□□□□ -2.31
LIMA1Q9UHB6 AP003327.1-201ENST00000529684 127 ntBASIC0.62□□□□□ -2.31
LIMA1Q9UHB6 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.62□□□□□ -2.31
LIMA1Q9UHB6 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.62□□□□□ -2.31
LIMA1Q9UHB6 MIR6788-201ENST00000618842 66 ntBASIC0.62□□□□□ -2.31
LIMA1Q9UHB6 RNU4-67P-201ENST00000364569 141 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 233.1 ms