Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.57□□□□□ -2.16
MSX2P35548 MIR377-201ENST00000362145 69 ntBASIC1.56□□□□□ -2.16
MSX2P35548 MIR103A2-201ENST00000362154 78 ntBASIC1.56□□□□□ -2.16
MSX2P35548 Y_RNA.73-201ENST00000362910 113 ntBASIC1.56□□□□□ -2.16
MSX2P35548 RNY1P1-201ENST00000364372 112 ntBASIC1.56□□□□□ -2.16
MSX2P35548 RNU6-654P-201ENST00000364373 107 ntBASIC1.56□□□□□ -2.16
MSX2P35548 SNORA2B-201ENST00000384583 137 ntBASIC1.56□□□□□ -2.16
MSX2P35548 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.56□□□□□ -2.16
MSX2P35548 RNU6-1275P-201ENST00000391087 107 ntBASIC1.56□□□□□ -2.16
MSX2P35548 RNU6-613P-201ENST00000410412 108 ntBASIC1.56□□□□□ -2.16
MSX2P35548 RNA5SP247-201ENST00000411181 105 ntBASIC1.56□□□□□ -2.16
MSX2P35548 RNU1-98P-201ENST00000458992 160 ntBASIC1.56□□□□□ -2.16
MSX2P35548 AC022137.1-201ENST00000483735 151 ntBASIC1.56□□□□□ -2.16
MSX2P35548 RNU6-902P-201ENST00000517212 91 ntBASIC1.56□□□□□ -2.16
MSX2P35548 AP003327.1-201ENST00000529684 127 ntBASIC1.56□□□□□ -2.16
MSX2P35548 MIR4668-201ENST00000582284 70 ntBASIC1.56□□□□□ -2.16
MSX2P35548 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.56□□□□□ -2.16
MSX2P35548 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
MSX2P35548 RNU6-497P-201ENST00000365316 104 ntBASIC1.55□□□□□ -2.16
MSX2P35548 Y_RNA.620-201ENST00000411009 88 ntBASIC1.55□□□□□ -2.16
MSX2P35548 RPS27P16-201ENST00000425758 201 ntBASIC1.55□□□□□ -2.16
MSX2P35548 RNU7-62P-201ENST00000458856 62 ntBASIC1.55□□□□□ -2.16
MSX2P35548 RPL30P7-201ENST00000479312 323 ntBASIC1.55□□□□□ -2.16
MSX2P35548 MTND5P40-201ENST00000559945 246 ntBASIC1.55□□□□□ -2.16
MSX2P35548 MIR3664-201ENST00000579074 99 ntBASIC1.55□□□□□ -2.16
MSX2P35548 AC090897.1-201ENST00000580909 226 ntBASIC1.55□□□□□ -2.16
MSX2P35548 MIR8081-201ENST00000611533 95 ntBASIC1.55□□□□□ -2.16
MSX2P35548 IGLL4P-201ENST00000614590 133 ntBASIC1.55□□□□□ -2.16
MSX2P35548 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
MSX2P35548 RNU6-580P-201ENST00000365159 107 ntBASIC1.54□□□□□ -2.16
MSX2P35548 RNA5SP95-201ENST00000410319 137 ntBASIC1.54□□□□□ -2.16
MSX2P35548 MIR3937-201ENST00000580135 106 ntBASIC1.54□□□□□ -2.16
MSX2P35548 Y_RNA.4-201ENST00000362333 112 ntBASIC1.53□□□□□ -2.16
MSX2P35548 Y_RNA.219-201ENST00000364232 113 ntBASIC1.53□□□□□ -2.16
MSX2P35548 RNU6-997P-201ENST00000384725 107 ntBASIC1.53□□□□□ -2.16
MSX2P35548 MIR181B2-201ENST00000385004 89 ntBASIC1.53□□□□□ -2.16
MSX2P35548 MT-TF-201ENST00000387314 71 ntBASIC1.53□□□□□ -2.16
MSX2P35548 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.53□□□□□ -2.16
MSX2P35548 SNRPGP12-201ENST00000449481 213 ntBASIC1.53□□□□□ -2.16
MSX2P35548 AL513043.2-201ENST00000573941 143 ntBASIC1.53□□□□□ -2.16
MSX2P35548 U6.109-201ENST00000636749 87 ntBASIC1.53□□□□□ -2.16
MSX2P35548 AC008163.1-202ENST00000636004 2889 ntBASIC1.52□□□□□ -2.17
MSX2P35548 RNU6-979P-201ENST00000383896 107 ntBASIC1.52□□□□□ -2.17
MSX2P35548 RNU6-1065P-201ENST00000384513 106 ntBASIC1.52□□□□□ -2.17
MSX2P35548 RNY1P4-201ENST00000384595 115 ntBASIC1.52□□□□□ -2.17
MSX2P35548 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.52□□□□□ -2.17
MSX2P35548 AL512310.8-201ENST00000550183 120 ntBASIC1.52□□□□□ -2.17
MSX2P35548 AC025521.1-201ENST00000621624 286 ntBASIC1.52□□□□□ -2.17
MSX2P35548 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.52□□□□□ -2.17
MSX2P35548 RNA5SP133-201ENST00000363368 119 ntBASIC1.51□□□□□ -2.17
MSX2P35548 SNORD78.1-201ENST00000390866 65 ntBASIC1.51□□□□□ -2.17
MSX2P35548 Y_RNA.609-201ENST00000410669 89 ntBASIC1.51□□□□□ -2.17
MSX2P35548 RNA5SP182-201ENST00000516064 82 ntBASIC1.51□□□□□ -2.17
MSX2P35548 MIR5588-201ENST00000581890 63 ntBASIC1.51□□□□□ -2.17
MSX2P35548 AC084768.2-201ENST00000622736 221 ntBASIC1.51□□□□□ -2.17
MSX2P35548 Y_RNA.119-201ENST00000363301 96 ntBASIC1.5□□□□□ -2.17
MSX2P35548 RNU6-1125P-201ENST00000363601 107 ntBASIC1.5□□□□□ -2.17
MSX2P35548 RNU6-1276P-201ENST00000365372 104 ntBASIC1.5□□□□□ -2.17
MSX2P35548 RNU6-480P-201ENST00000384332 107 ntBASIC1.5□□□□□ -2.17
MSX2P35548 MIR320A-201ENST00000385302 82 ntBASIC1.5□□□□□ -2.17
MSX2P35548 RNU4-83P-201ENST00000410863 133 ntBASIC1.5□□□□□ -2.17
MSX2P35548 AC108667.1-201ENST00000428618 249 ntBASIC1.5□□□□□ -2.17
MSX2P35548 Y_RNA.685-201ENST00000516532 108 ntBASIC1.5□□□□□ -2.17
MSX2P35548 MIR4500-201ENST00000579472 76 ntBASIC1.5□□□□□ -2.17
MSX2P35548 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
MSX2P35548 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
MSX2P35548 RNU6-1054P-201ENST00000411293 104 ntBASIC1.49□□□□□ -2.17
MSX2P35548 AC023790.1-201ENST00000482174 347 ntBASIC1.49□□□□□ -2.17
MSX2P35548 RNU6-1053P-201ENST00000515930 101 ntBASIC1.49□□□□□ -2.17
MSX2P35548 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.49□□□□□ -2.17
MSX2P35548 RNU6-633P-201ENST00000362612 103 ntBASIC1.48□□□□□ -2.17
MSX2P35548 RNU6-228P-201ENST00000362700 106 ntBASIC1.48□□□□□ -2.17
MSX2P35548 Y_RNA.191-201ENST00000363972 113 ntBASIC1.48□□□□□ -2.17
MSX2P35548 RNU6-787P-201ENST00000384032 107 ntBASIC1.48□□□□□ -2.17
MSX2P35548 Y_RNA.588-201ENST00000391254 102 ntBASIC1.48□□□□□ -2.17
MSX2P35548 MIR18B-201ENST00000454574 71 ntBASIC1.48□□□□□ -2.17
MSX2P35548 RNU6-850P-201ENST00000516934 103 ntBASIC1.48□□□□□ -2.17
MSX2P35548 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
MSX2P35548 RNU6-509P-201ENST00000363519 107 ntBASIC1.47□□□□□ -2.17
MSX2P35548 RNU6-571P-201ENST00000384128 107 ntBASIC1.47□□□□□ -2.17
MSX2P35548 RNU6-242P-201ENST00000384359 107 ntBASIC1.47□□□□□ -2.17
MSX2P35548 MIR1304-201ENST00000408243 91 ntBASIC1.47□□□□□ -2.17
MSX2P35548 BX276092.1-201ENST00000427368 251 ntBASIC1.47□□□□□ -2.17
MSX2P35548 AL161932.1-201ENST00000437408 146 ntBASIC1.47□□□□□ -2.17
MSX2P35548 RNU7-171P-201ENST00000459581 62 ntBASIC1.47□□□□□ -2.17
MSX2P35548 AC048334.1-201ENST00000477975 159 ntBASIC1.47□□□□□ -2.17
MSX2P35548 SNORA25.15-201ENST00000516487 89 ntBASIC1.47□□□□□ -2.17
MSX2P35548 MIR4498-201ENST00000577599 66 ntBASIC1.47□□□□□ -2.17
MSX2P35548 MIR4491-201ENST00000581087 68 ntBASIC1.47□□□□□ -2.17
MSX2P35548 MIR3202-2-201ENST00000635980 79 ntBASIC1.47□□□□□ -2.17
MSX2P35548 RNU6-1124P-201ENST00000384169 107 ntBASIC1.46□□□□□ -2.18
MSX2P35548 snoU13.21-201ENST00000459368 105 ntBASIC1.46□□□□□ -2.18
MSX2P35548 MIR4781-201ENST00000585250 76 ntBASIC1.46□□□□□ -2.18
MSX2P35548 MIR548BB-201ENST00000626714 66 ntBASIC1.46□□□□□ -2.18
MSX2P35548 AC006160.2-201ENST00000637708 154 ntBASIC1.46□□□□□ -2.18
MSX2P35548 MIR378A-201ENST00000362177 66 ntBASIC1.45□□□□□ -2.18
MSX2P35548 Y_RNA.57-201ENST00000362806 113 ntBASIC1.45□□□□□ -2.18
MSX2P35548 SNORD115-27-201ENST00000364430 82 ntBASIC1.45□□□□□ -2.18
MSX2P35548 RNU1-36P-201ENST00000365130 165 ntBASIC1.45□□□□□ -2.18
MSX2P35548 SNORA75.2-201ENST00000391138 150 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 208.3 ms