Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 RNU6-184P-201ENST00000516514 107 ntBASIC1.22□□□□□ -2.21
HOXD9P28356 SNORA4-201ENST00000584302 138 ntBASIC1.22□□□□□ -2.21
HOXD9P28356 AL442128.1-201ENST00000615151 90 ntBASIC1.22□□□□□ -2.21
HOXD9P28356 AL512310.12-203ENST00000640543 90 ntBASIC1.22□□□□□ -2.21
HOXD9P28356 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.21□□□□□ -2.22
HOXD9P28356 Y_RNA.98-201ENST00000363109 102 ntBASIC1.21□□□□□ -2.22
HOXD9P28356 Y_RNA.363-201ENST00000365529 113 ntBASIC1.21□□□□□ -2.22
HOXD9P28356 MIR1276-201ENST00000408707 83 ntBASIC1.21□□□□□ -2.22
HOXD9P28356 AC096949.1-201ENST00000412047 152 ntBASIC1.21□□□□□ -2.22
HOXD9P28356 MIR18B-201ENST00000454574 71 ntBASIC1.21□□□□□ -2.22
HOXD9P28356 SNORA31.2-201ENST00000516019 134 ntBASIC1.21□□□□□ -2.22
HOXD9P28356 SNORA40.13-201ENST00000516379 120 ntBASIC1.21□□□□□ -2.22
HOXD9P28356 RNU6-1006P-201ENST00000516998 103 ntBASIC1.21□□□□□ -2.22
HOXD9P28356 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.2□□□□□ -2.22
HOXD9P28356 RNU6-640P-201ENST00000363693 105 ntBASIC1.2□□□□□ -2.22
HOXD9P28356 Y_RNA.448-201ENST00000384185 108 ntBASIC1.2□□□□□ -2.22
HOXD9P28356 MTATP8P2-201ENST00000435212 202 ntBASIC1.2□□□□□ -2.22
HOXD9P28356 RNU7-48P-201ENST00000458875 63 ntBASIC1.2□□□□□ -2.22
HOXD9P28356 RNA5SP102-201ENST00000516865 106 ntBASIC1.2□□□□□ -2.22
HOXD9P28356 RNA5SP170-201ENST00000517150 101 ntBASIC1.2□□□□□ -2.22
HOXD9P28356 uc_338.6-201ENST00000613544 171 ntBASIC1.2□□□□□ -2.22
HOXD9P28356 AC105081.1-201ENST00000617727 106 ntBASIC1.2□□□□□ -2.22
HOXD9P28356 MIR2052-201ENST00000636055 55 ntBASIC1.2□□□□□ -2.22
HOXD9P28356 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
HOXD9P28356 RNY1P2-201ENST00000364820 117 ntBASIC1.19□□□□□ -2.22
HOXD9P28356 SNORA25.9-201ENST00000365087 128 ntBASIC1.19□□□□□ -2.22
HOXD9P28356 MIR34C-201ENST00000384831 77 ntBASIC1.19□□□□□ -2.22
HOXD9P28356 SNORA75.2-201ENST00000391138 150 ntBASIC1.19□□□□□ -2.22
HOXD9P28356 SNORA75.3-201ENST00000391231 150 ntBASIC1.19□□□□□ -2.22
HOXD9P28356 AC036111.3-201ENST00000526389 112 ntBASIC1.19□□□□□ -2.22
HOXD9P28356 MIR376B-201ENST00000614515 100 ntBASIC1.19□□□□□ -2.22
HOXD9P28356 Y_RNA.43-201ENST00000362670 111 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 Y_RNA.107-201ENST00000363190 121 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 SNORD38.1-201ENST00000363863 68 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 SNORD45B-201ENST00000364617 72 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 SNORD113.3-201ENST00000364630 78 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 RNU6-865P-201ENST00000364772 107 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 SNORA80D-201ENST00000384488 135 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 MIR499A-201ENST00000384903 122 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 U8.15-201ENST00000390947 134 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 RNA5SP95-201ENST00000410319 137 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 AL591704.2-201ENST00000421658 181 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 RNU7-21P-201ENST00000459430 62 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 MIR4439-201ENST00000583746 80 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 AC096720.1-201ENST00000604441 183 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 AC012676.2-201ENST00000619258 186 ntBASIC1.18□□□□□ -2.22
HOXD9P28356 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.18□□□□□ -2.22
HOXD9P28356 RNU6-170P-201ENST00000362832 104 ntBASIC1.17□□□□□ -2.22
HOXD9P28356 RNU6-939P-201ENST00000384634 107 ntBASIC1.17□□□□□ -2.22
HOXD9P28356 MIR618-201ENST00000385287 98 ntBASIC1.17□□□□□ -2.22
HOXD9P28356 SNORD111-201ENST00000408139 94 ntBASIC1.17□□□□□ -2.22
HOXD9P28356 AC133485.1-201ENST00000567176 124 ntBASIC1.17□□□□□ -2.22
HOXD9P28356 AP001362.1-201ENST00000625165 124 ntBASIC1.17□□□□□ -2.22
HOXD9P28356 AC008163.1-202ENST00000636004 2889 ntBASIC1.17□□□□□ -2.22
HOXD9P28356 Y_RNA.95-201ENST00000363079 95 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 Y_RNA.247-201ENST00000364500 92 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 SNORA25-201ENST00000384384 134 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 SNORA2B-201ENST00000384583 137 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.16□□□□□ -2.22
HOXD9P28356 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 MIR1287-201ENST00000408492 90 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 AC004941.2-201ENST00000427009 228 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 RPS29P28-201ENST00000446439 141 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 SNORD79.1-201ENST00000516069 84 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 RNU7-40P-201ENST00000516397 64 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 SNORA70.22-201ENST00000517160 124 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 AC138749.4-201ENST00000563970 127 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 AC106800.4-201ENST00000614905 153 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 AC012531.4-201ENST00000616509 177 ntBASIC1.16□□□□□ -2.22
HOXD9P28356 HSBP1P2-201ENST00000299671 229 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 MIR96-201ENST00000362288 78 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 Y_RNA.330-201ENST00000365230 109 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 Y_RNA.369-201ENST00000365568 117 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 MIR222-201ENST00000384992 110 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 MIR150-201ENST00000385048 84 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 RNU6-910P-201ENST00000390844 107 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 SNORD12-201ENST00000391002 90 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 MRPL35P3-201ENST00000421557 364 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 MIR4777-201ENST00000583710 86 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 MIR6504-201ENST00000613520 61 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 AC091304.10-201ENST00000641554 121 ntBASIC1.15□□□□□ -2.23
HOXD9P28356 SNORD38.2-201ENST00000384470 69 ntBASIC1.14□□□□□ -2.23
HOXD9P28356 RNU7-90P-201ENST00000459216 62 ntBASIC1.14□□□□□ -2.23
HOXD9P28356 Y_RNA.659-201ENST00000515994 113 ntBASIC1.14□□□□□ -2.23
HOXD9P28356 MIR5582-201ENST00000579697 68 ntBASIC1.14□□□□□ -2.23
HOXD9P28356 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
HOXD9P28356 Y_RNA.96-201ENST00000363092 109 ntBASIC1.13□□□□□ -2.23
HOXD9P28356 RNU6-1255P-201ENST00000363434 112 ntBASIC1.13□□□□□ -2.23
HOXD9P28356 Y_RNA.173-201ENST00000363776 113 ntBASIC1.13□□□□□ -2.23
HOXD9P28356 RNU6-1163P-201ENST00000364516 107 ntBASIC1.13□□□□□ -2.23
HOXD9P28356 RNU1-36P-201ENST00000365130 165 ntBASIC1.13□□□□□ -2.23
HOXD9P28356 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.13□□□□□ -2.23
HOXD9P28356 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.13□□□□□ -2.23
HOXD9P28356 MIR548G-201ENST00000408442 89 ntBASIC1.13□□□□□ -2.23
HOXD9P28356 RNU6-795P-201ENST00000516323 103 ntBASIC1.13□□□□□ -2.23
HOXD9P28356 MIR4491-201ENST00000581087 68 ntBASIC1.13□□□□□ -2.23
HOXD9P28356 MIR4295-201ENST00000585286 85 ntBASIC1.13□□□□□ -2.23
HOXD9P28356 RNU6-90P-201ENST00000606352 106 ntBASIC1.13□□□□□ -2.23
HOXD9P28356 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
HOXD9P28356 SNORD114-27-201ENST00000363766 70 ntBASIC1.12□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 213.8 ms