Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 RNU6-971P-201ENST00000516920 106 ntBASIC0.49□□□□□ -2.33
CDX2Q99626 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.49□□□□□ -2.33
CDX2Q99626 MIR3121-201ENST00000579680 77 ntBASIC0.49□□□□□ -2.33
CDX2Q99626 uc_338.17-201ENST00000619633 179 ntBASIC0.49□□□□□ -2.33
CDX2Q99626 MIR6717-201ENST00000622747 73 ntBASIC0.49□□□□□ -2.33
CDX2Q99626 AC023934.1-201ENST00000574529 2389 ntBASIC0.49□□□□□ -2.33
CDX2Q99626 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.48□□□□□ -2.33
CDX2Q99626 SNORD18A-201ENST00000363753 72 ntBASIC0.48□□□□□ -2.33
CDX2Q99626 Y_RNA.568-201ENST00000384742 113 ntBASIC0.48□□□□□ -2.33
CDX2Q99626 MIR92A1-201ENST00000385233 78 ntBASIC0.48□□□□□ -2.33
CDX2Q99626 RNU6-1307P-201ENST00000391012 103 ntBASIC0.48□□□□□ -2.33
CDX2Q99626 Y_RNA.584-201ENST00000391090 114 ntBASIC0.48□□□□□ -2.33
CDX2Q99626 AC096949.1-201ENST00000412047 152 ntBASIC0.48□□□□□ -2.33
CDX2Q99626 RNU7-73P-201ENST00000458743 63 ntBASIC0.48□□□□□ -2.33
CDX2Q99626 Y_RNA.690-201ENST00000516603 95 ntBASIC0.48□□□□□ -2.33
CDX2Q99626 Y_RNA.757-201ENST00000578934 114 ntBASIC0.48□□□□□ -2.33
CDX2Q99626 MIR548X2-201ENST00000579776 100 ntBASIC0.48□□□□□ -2.33
CDX2Q99626 AC021613.1-201ENST00000623880 111 ntBASIC0.48□□□□□ -2.33
CDX2Q99626 MIR6841-201ENST00000637129 72 ntBASIC0.48□□□□□ -2.33
CDX2Q99626 Z97988.1-201ENST00000637697 135 ntBASIC0.48□□□□□ -2.33
CDX2Q99626 Y_RNA.114-201ENST00000363265 113 ntBASIC0.47□□□□□ -2.33
CDX2Q99626 Y_RNA.218-201ENST00000364218 104 ntBASIC0.47□□□□□ -2.33
CDX2Q99626 Y_RNA.488-201ENST00000384403 102 ntBASIC0.47□□□□□ -2.33
CDX2Q99626 Y_RNA.586-201ENST00000391146 98 ntBASIC0.47□□□□□ -2.33
CDX2Q99626 SNORA26-201ENST00000391286 122 ntBASIC0.47□□□□□ -2.33
CDX2Q99626 RNU7-96P-201ENST00000459535 64 ntBASIC0.47□□□□□ -2.33
CDX2Q99626 RNU6-1110P-201ENST00000516462 101 ntBASIC0.47□□□□□ -2.33
CDX2Q99626 AC020891.4-201ENST00000605745 93 ntBASIC0.47□□□□□ -2.33
CDX2Q99626 AC010332.2-201ENST00000613083 1904 ntBASIC0.46□□□□□ -2.34
CDX2Q99626 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.46□□□□□ -2.34
CDX2Q99626 MIR30D-201ENST00000362283 70 ntBASIC0.46□□□□□ -2.34
CDX2Q99626 SNORA22.1-201ENST00000362701 134 ntBASIC0.46□□□□□ -2.34
CDX2Q99626 Y_RNA.261-201ENST00000364631 102 ntBASIC0.46□□□□□ -2.34
CDX2Q99626 SNORA32-201ENST00000384072 121 ntBASIC0.46□□□□□ -2.34
CDX2Q99626 SNORA2B-201ENST00000384583 137 ntBASIC0.46□□□□□ -2.34
CDX2Q99626 MIR588-201ENST00000384900 83 ntBASIC0.46□□□□□ -2.34
CDX2Q99626 RNU6-1319P-201ENST00000390855 104 ntBASIC0.46□□□□□ -2.34
CDX2Q99626 RNU6-747P-201ENST00000390928 104 ntBASIC0.46□□□□□ -2.34
CDX2Q99626 RNU6-241P-201ENST00000391148 104 ntBASIC0.46□□□□□ -2.34
CDX2Q99626 RNA5SP144-201ENST00000410846 116 ntBASIC0.46□□□□□ -2.34
CDX2Q99626 RNU6-177P-201ENST00000411257 104 ntBASIC0.46□□□□□ -2.34
CDX2Q99626 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.46□□□□□ -2.34
CDX2Q99626 snoU13.16-201ENST00000459350 104 ntBASIC0.46□□□□□ -2.34
CDX2Q99626 RNU7-123P-201ENST00000515911 60 ntBASIC0.46□□□□□ -2.34
CDX2Q99626 RNU6-126P-201ENST00000516685 103 ntBASIC0.46□□□□□ -2.34
CDX2Q99626 MIR3646-201ENST00000578301 84 ntBASIC0.46□□□□□ -2.34
CDX2Q99626 AL359881.1-201ENST00000602916 267 ntBASIC0.46□□□□□ -2.34
CDX2Q99626 Y_RNA.120-201ENST00000363304 110 ntBASIC0.45□□□□□ -2.34
CDX2Q99626 SNORA1.2-201ENST00000365189 134 ntBASIC0.45□□□□□ -2.34
CDX2Q99626 RNU6-690P-201ENST00000365242 106 ntBASIC0.45□□□□□ -2.34
CDX2Q99626 SNORA2A-201ENST00000383885 135 ntBASIC0.45□□□□□ -2.34
CDX2Q99626 RNY1P5-201ENST00000383890 115 ntBASIC0.45□□□□□ -2.34
CDX2Q99626 RNU6-746P-201ENST00000384112 109 ntBASIC0.45□□□□□ -2.34
CDX2Q99626 RNY1P6-201ENST00000384193 109 ntBASIC0.45□□□□□ -2.34
CDX2Q99626 SNORA50A-201ENST00000384225 134 ntBASIC0.45□□□□□ -2.34
CDX2Q99626 SNORD89-201ENST00000390981 114 ntBASIC0.45□□□□□ -2.34
CDX2Q99626 SNORD99-201ENST00000408612 74 ntBASIC0.45□□□□□ -2.34
CDX2Q99626 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.45□□□□□ -2.34
CDX2Q99626 RNU6-613P-201ENST00000410412 108 ntBASIC0.45□□□□□ -2.34
CDX2Q99626 RNU6-1211P-201ENST00000459179 105 ntBASIC0.45□□□□□ -2.34
CDX2Q99626 MIR548AE2-201ENST00000583456 67 ntBASIC0.45□□□□□ -2.34
CDX2Q99626 AC008608.1-201ENST00000603910 127 ntBASIC0.45□□□□□ -2.34
CDX2Q99626 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.45□□□□□ -2.34
CDX2Q99626 MIR6718-201ENST00000616153 80 ntBASIC0.45□□□□□ -2.34
CDX2Q99626 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC0.45□□□□□ -2.34
CDX2Q99626 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.45□□□□□ -2.34
CDX2Q99626 MIR302B-201ENST00000362188 73 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 RNU6-580P-201ENST00000365159 107 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.44□□□□□ -2.34
CDX2Q99626 RNY1P8-201ENST00000383970 114 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 SNORA18-201ENST00000384416 132 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 MIR563-201ENST00000385080 79 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 U8.15-201ENST00000390947 134 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 RNA5SP299-201ENST00000391203 116 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 MIR513C-201ENST00000401352 84 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 SNORD111-201ENST00000408139 94 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 MIR1827-201ENST00000408549 66 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 RNA5SP25-201ENST00000410815 110 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 AC244098.3-201ENST00000424803 96 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 AL158147.1-201ENST00000443970 75 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 snoU13.2-201ENST00000459201 104 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 RNU7-164P-201ENST00000459221 62 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 AC107297.1-201ENST00000459991 176 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 RNY4P20-201ENST00000516678 93 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 Y_RNA.703-201ENST00000516846 111 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 AP001328.1-201ENST00000528550 176 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 AC025627.3-201ENST00000582078 182 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 MIR4305-201ENST00000583252 102 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 AC021443.1-201ENST00000604478 211 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 Y_RNA.773-201ENST00000607168 90 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 AL365222.1-201ENST00000614661 98 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 AC105081.1-201ENST00000617727 106 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 AP001340.1-201ENST00000624405 217 ntBASIC0.44□□□□□ -2.34
CDX2Q99626 Y_RNA.71-201ENST00000362892 104 ntBASIC0.43□□□□□ -2.34
CDX2Q99626 RNU6-704P-201ENST00000364162 103 ntBASIC0.43□□□□□ -2.34
CDX2Q99626 Y_RNA.298-201ENST00000364960 107 ntBASIC0.43□□□□□ -2.34
CDX2Q99626 RNY1P13-201ENST00000365030 105 ntBASIC0.43□□□□□ -2.34
CDX2Q99626 RNU6-396P-201ENST00000365369 105 ntBASIC0.43□□□□□ -2.34
CDX2Q99626 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.43□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 167.6 ms