Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC021613.1-201ENST00000623880 111 ntBASIC-0.99□□□□□ -2.57
CHD9Q3L8U1 RNU5A-2P-201ENST00000384337 116 ntBASIC-0.99□□□□□ -2.57
CHD9Q3L8U1 SNORA53-201ENST00000391141 249 ntBASIC-0.99□□□□□ -2.57
CHD9Q3L8U1 MIR889-201ENST00000401280 79 ntBASIC-0.99□□□□□ -2.57
CHD9Q3L8U1 AC024067.1-201ENST00000426199 223 ntBASIC-0.99□□□□□ -2.57
CHD9Q3L8U1 MTND2P14-201ENST00000482139 351 ntBASIC-0.99□□□□□ -2.57
CHD9Q3L8U1 AC060788.1-201ENST00000521318 469 ntBASIC-0.99□□□□□ -2.57
CHD9Q3L8U1 AL021707.8-201ENST00000609428 183 ntBASIC-0.99□□□□□ -2.57
CHD9Q3L8U1 RNU6-1252P-201ENST00000363054 104 ntBASIC-1□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.486-201ENST00000384398 107 ntBASIC-1□□□□□ -2.57
CHD9Q3L8U1 RNU6-373P-201ENST00000411247 98 ntBASIC-1□□□□□ -2.57
CHD9Q3L8U1 MTCO2P19-201ENST00000427513 598 ntBASIC-1□□□□□ -2.57
CHD9Q3L8U1 MIR5197-201ENST00000583721 112 ntBASIC-1□□□□□ -2.57
CHD9Q3L8U1 AC006006.1-201ENST00000603082 144 ntBASIC-1□□□□□ -2.57
CHD9Q3L8U1 RNU6-1301P-201ENST00000362724 104 ntBASIC-1□□□□□ -2.57
CHD9Q3L8U1 SNORA2.1-201ENST00000363089 137 ntBASIC-1□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.105-201ENST00000363182 111 ntBASIC-1□□□□□ -2.57
CHD9Q3L8U1 SNORA51.5-201ENST00000384126 131 ntBASIC-1□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.448-201ENST00000384185 108 ntBASIC-1□□□□□ -2.57
CHD9Q3L8U1 RNY3P4-201ENST00000384428 101 ntBASIC-1□□□□□ -2.57
CHD9Q3L8U1 RNU6-476P-201ENST00000384726 107 ntBASIC-1□□□□□ -2.57
CHD9Q3L8U1 RNU6-1248P-201ENST00000391096 64 ntBASIC-1□□□□□ -2.57
CHD9Q3L8U1 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC-1□□□□□ -2.57
CHD9Q3L8U1 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC-1□□□□□ -2.57
CHD9Q3L8U1 MIR6773-201ENST00000612812 74 ntBASIC-1□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.27-201ENST00000362540 103 ntBASIC-1.01□□□□□ -2.57
CHD9Q3L8U1 RNU4-50P-201ENST00000364361 141 ntBASIC-1.01□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.339-201ENST00000365325 102 ntBASIC-1.01□□□□□ -2.57
CHD9Q3L8U1 MIR519A1-201ENST00000385257 85 ntBASIC-1.01□□□□□ -2.57
CHD9Q3L8U1 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.01□□□□□ -2.57
CHD9Q3L8U1 RNU6-510P-201ENST00000391239 108 ntBASIC-1.01□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.591-201ENST00000410228 104 ntBASIC-1.01□□□□□ -2.57
CHD9Q3L8U1 RNU6-248P-201ENST00000410720 107 ntBASIC-1.01□□□□□ -2.57
CHD9Q3L8U1 RNU6-453P-201ENST00000516819 85 ntBASIC-1.01□□□□□ -2.57
CHD9Q3L8U1 RNU6-850P-201ENST00000516934 103 ntBASIC-1.01□□□□□ -2.57
CHD9Q3L8U1 MTND3P12-201ENST00000559068 328 ntBASIC-1.01□□□□□ -2.57
CHD9Q3L8U1 SNORD115-27-201ENST00000364430 82 ntBASIC-1.01□□□□□ -2.57
CHD9Q3L8U1 RNU5E-4P-201ENST00000364931 120 ntBASIC-1.01□□□□□ -2.57
CHD9Q3L8U1 RNU6-306P-201ENST00000384617 107 ntBASIC-1.01□□□□□ -2.57
CHD9Q3L8U1 MIR122-201ENST00000385044 85 ntBASIC-1.01□□□□□ -2.57
CHD9Q3L8U1 RNU7-125P-201ENST00000458760 62 ntBASIC-1.01□□□□□ -2.57
CHD9Q3L8U1 MIR5692C2-201ENST00000577959 77 ntBASIC-1.01□□□□□ -2.57
CHD9Q3L8U1 AC006504.6-201ENST00000590142 199 ntBASIC-1.01□□□□□ -2.57
CHD9Q3L8U1 MIR6818-201ENST00000621576 65 ntBASIC-1.01□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.212-201ENST00000364177 102 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.304-201ENST00000365011 112 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 RNY1P6-201ENST00000384193 109 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 RNU6-297P-201ENST00000384636 107 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 MIR509-1-201ENST00000385265 94 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 MIR509-2-201ENST00000390724 91 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 SNORA26.8-201ENST00000391306 124 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 AL603914.1-201ENST00000401964 204 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 MIR548F5-201ENST00000408421 86 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 RNU6-1205P-201ENST00000363625 106 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 RNU6-1214P-201ENST00000363650 109 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 MIR539-201ENST00000365690 78 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.462-201ENST00000384268 102 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 MIR628-201ENST00000385229 95 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.618-201ENST00000410949 107 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 RPS3AP52-201ENST00000435639 297 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 AC144568.1-201ENST00000520139 137 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 AC145350.1-201ENST00000567426 208 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 AL162413.1-201ENST00000603198 110 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 AL669831.3-213ENST00000636676 183 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.230-201ENST00000364348 109 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.373-201ENST00000365600 103 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.414-201ENST00000384011 101 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.515-201ENST00000384535 112 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.615-201ENST00000410769 117 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 RNU6-559P-201ENST00000516151 98 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 MIR4659A-201ENST00000580269 81 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 MIR4308-201ENST00000580634 81 ntBASIC-1.02□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.127-201ENST00000363386 109 ntBASIC-1.03□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.461-201ENST00000384263 103 ntBASIC-1.03□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.531-201ENST00000384589 121 ntBASIC-1.03□□□□□ -2.57
CHD9Q3L8U1 SNORD77B-201ENST00000391112 67 ntBASIC-1.03□□□□□ -2.57
CHD9Q3L8U1 RNU6-1254P-201ENST00000391266 104 ntBASIC-1.03□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.601-201ENST00000410500 113 ntBASIC-1.03□□□□□ -2.57
CHD9Q3L8U1 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC-1.03□□□□□ -2.57
CHD9Q3L8U1 MIR582-201ENST00000365731 98 ntBASIC-1.03□□□□□ -2.57
CHD9Q3L8U1 SNORD116-11-201ENST00000383882 92 ntBASIC-1.03□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.424-201ENST00000384063 103 ntBASIC-1.03□□□□□ -2.57
CHD9Q3L8U1 SNORA40.4-201ENST00000390971 128 ntBASIC-1.03□□□□□ -2.57
CHD9Q3L8U1 SNORA26.4-201ENST00000391188 123 ntBASIC-1.03□□□□□ -2.57
CHD9Q3L8U1 RNU7-195P-201ENST00000458793 62 ntBASIC-1.03□□□□□ -2.57
CHD9Q3L8U1 RNU7-134P-201ENST00000458997 64 ntBASIC-1.03□□□□□ -2.57
CHD9Q3L8U1 RNU6-232P-201ENST00000517144 64 ntBASIC-1.03□□□□□ -2.57
CHD9Q3L8U1 SNORD81.1-201ENST00000363064 77 ntBASIC-1.04□□□□□ -2.58
CHD9Q3L8U1 RNU6-763P-201ENST00000390865 106 ntBASIC-1.04□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.596-201ENST00000410462 109 ntBASIC-1.04□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.682-201ENST00000516457 100 ntBASIC-1.04□□□□□ -2.58
CHD9Q3L8U1 AC048344.4-201ENST00000619744 527 ntBASIC-1.04□□□□□ -2.58
CHD9Q3L8U1 RNU6-593P-201ENST00000364716 112 ntBASIC-1.04□□□□□ -2.58
CHD9Q3L8U1 RNU6-337P-201ENST00000391243 106 ntBASIC-1.04□□□□□ -2.58
CHD9Q3L8U1 AC022028.1-201ENST00000412054 408 ntBASIC-1.04□□□□□ -2.58
CHD9Q3L8U1 MTCO2P24-201ENST00000515611 426 ntBASIC-1.04□□□□□ -2.58
CHD9Q3L8U1 SNORD63.1-201ENST00000516178 80 ntBASIC-1.04□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.678-201ENST00000516408 96 ntBASIC-1.04□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 182.9 ms