Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AL662814.1-201ENST00000617364 121 ntBASIC0.57□□□□□ -2.32
LIME1Q9H400 AC078938.1-201ENST00000620993 318 ntBASIC0.57□□□□□ -2.32
LIME1Q9H400 AC243829.3-201ENST00000622177 108 ntBASIC0.57□□□□□ -2.32
LIME1Q9H400 Y_RNA.240-201ENST00000364469 95 ntBASIC0.56□□□□□ -2.32
LIME1Q9H400 RNU6-1082P-201ENST00000364574 107 ntBASIC0.56□□□□□ -2.32
LIME1Q9H400 RNU6-1336P-201ENST00000383886 109 ntBASIC0.56□□□□□ -2.32
LIME1Q9H400 MIR520F-201ENST00000384824 87 ntBASIC0.56□□□□□ -2.32
LIME1Q9H400 MIR125B2-201ENST00000385128 89 ntBASIC0.56□□□□□ -2.32
LIME1Q9H400 MIR1257-201ENST00000408490 117 ntBASIC0.56□□□□□ -2.32
LIME1Q9H400 RNU5E-9P-201ENST00000411164 104 ntBASIC0.56□□□□□ -2.32
LIME1Q9H400 RNU7-56P-201ENST00000458744 62 ntBASIC0.56□□□□□ -2.32
LIME1Q9H400 RNA5SP121-201ENST00000516537 101 ntBASIC0.56□□□□□ -2.32
LIME1Q9H400 RNU7-121P-201ENST00000516604 62 ntBASIC0.56□□□□□ -2.32
LIME1Q9H400 RNU7-70P-201ENST00000516941 66 ntBASIC0.56□□□□□ -2.32
LIME1Q9H400 AC011195.1-201ENST00000578177 177 ntBASIC0.56□□□□□ -2.32
LIME1Q9H400 AC023934.1-201ENST00000574529 2389 ntBASIC0.56□□□□□ -2.32
LIME1Q9H400 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.55□□□□□ -2.32
LIME1Q9H400 RNU4-84P-201ENST00000364200 139 ntBASIC0.55□□□□□ -2.32
LIME1Q9H400 Y_RNA.337-201ENST00000365312 102 ntBASIC0.55□□□□□ -2.32
LIME1Q9H400 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
LIME1Q9H400 RNY1P6-201ENST00000384193 109 ntBASIC0.55□□□□□ -2.32
LIME1Q9H400 Y_RNA.521-201ENST00000384560 114 ntBASIC0.55□□□□□ -2.32
LIME1Q9H400 SNORA20-201ENST00000384662 132 ntBASIC0.55□□□□□ -2.32
LIME1Q9H400 SNORA75.5-201ENST00000391291 81 ntBASIC0.55□□□□□ -2.32
LIME1Q9H400 MIR938-201ENST00000401216 83 ntBASIC0.55□□□□□ -2.32
LIME1Q9H400 RNU7-120P-201ENST00000459334 63 ntBASIC0.55□□□□□ -2.32
LIME1Q9H400 RNU6-138P-201ENST00000515952 107 ntBASIC0.55□□□□□ -2.32
LIME1Q9H400 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.55□□□□□ -2.32
LIME1Q9H400 MIR3646-201ENST00000578301 84 ntBASIC0.55□□□□□ -2.32
LIME1Q9H400 SNORD92-201ENST00000585078 85 ntBASIC0.55□□□□□ -2.32
LIME1Q9H400 MIR330-201ENST00000362196 94 ntBASIC0.54□□□□□ -2.32
LIME1Q9H400 RNU6-349P-201ENST00000362402 107 ntBASIC0.54□□□□□ -2.32
LIME1Q9H400 Y_RNA.85-201ENST00000363014 111 ntBASIC0.54□□□□□ -2.32
LIME1Q9H400 RNU4-45P-201ENST00000365469 141 ntBASIC0.54□□□□□ -2.32
LIME1Q9H400 RNU6-239P-201ENST00000390990 99 ntBASIC0.54□□□□□ -2.32
LIME1Q9H400 RNU6-388P-201ENST00000517012 105 ntBASIC0.54□□□□□ -2.32
LIME1Q9H400 RNU6-389P-201ENST00000517048 105 ntBASIC0.54□□□□□ -2.32
LIME1Q9H400 RNU6-682P-201ENST00000363843 106 ntBASIC0.53□□□□□ -2.32
LIME1Q9H400 Y_RNA.441-201ENST00000384123 112 ntBASIC0.53□□□□□ -2.32
LIME1Q9H400 Y_RNA.785-201ENST00000384290 109 ntBASIC0.53□□□□□ -2.32
LIME1Q9H400 Y_RNA.476-201ENST00000384347 108 ntBASIC0.53□□□□□ -2.32
LIME1Q9H400 Y_RNA.793-201ENST00000411222 111 ntBASIC0.53□□□□□ -2.32
LIME1Q9H400 AC092628.1-201ENST00000436250 252 ntBASIC0.53□□□□□ -2.32
LIME1Q9H400 RNU6-893P-201ENST00000458841 100 ntBASIC0.53□□□□□ -2.32
LIME1Q9H400 AP002392.1-201ENST00000537692 208 ntBASIC0.53□□□□□ -2.32
LIME1Q9H400 AC141846.1-201ENST00000568348 142 ntBASIC0.53□□□□□ -2.32
LIME1Q9H400 Y_RNA.757-201ENST00000578934 114 ntBASIC0.53□□□□□ -2.32
LIME1Q9H400 AC090897.1-201ENST00000580909 226 ntBASIC0.53□□□□□ -2.32
LIME1Q9H400 AC008608.1-201ENST00000603910 127 ntBASIC0.53□□□□□ -2.32
LIME1Q9H400 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.53□□□□□ -2.32
LIME1Q9H400 MIR2909-201ENST00000617113 69 ntBASIC0.53□□□□□ -2.32
LIME1Q9H400 AL589743.1-201ENST00000551932 2712 ntBASIC0.53□□□□□ -2.32
LIME1Q9H400 Y_RNA.42-201ENST00000362660 108 ntBASIC0.52□□□□□ -2.33
LIME1Q9H400 RNU4-16P-201ENST00000364737 141 ntBASIC0.52□□□□□ -2.33
LIME1Q9H400 RNU6-818P-201ENST00000364837 108 ntBASIC0.52□□□□□ -2.33
LIME1Q9H400 Y_RNA.433-201ENST00000384089 102 ntBASIC0.52□□□□□ -2.33
LIME1Q9H400 SNORD100-201ENST00000408573 76 ntBASIC0.52□□□□□ -2.33
LIME1Q9H400 RNA5SP144-201ENST00000410846 116 ntBASIC0.52□□□□□ -2.33
LIME1Q9H400 AC096949.1-201ENST00000412047 152 ntBASIC0.52□□□□□ -2.33
LIME1Q9H400 RNU2-60P-201ENST00000517290 128 ntBASIC0.52□□□□□ -2.33
LIME1Q9H400 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.52□□□□□ -2.33
LIME1Q9H400 MIR8066-201ENST00000617280 78 ntBASIC0.52□□□□□ -2.33
LIME1Q9H400 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.52□□□□□ -2.33
LIME1Q9H400 RNA5SP62-201ENST00000363457 110 ntBASIC0.51□□□□□ -2.33
LIME1Q9H400 Y_RNA.257-201ENST00000364596 102 ntBASIC0.51□□□□□ -2.33
LIME1Q9H400 Y_RNA.497-201ENST00000384447 98 ntBASIC0.51□□□□□ -2.33
LIME1Q9H400 RNU6-1135P-201ENST00000411083 103 ntBASIC0.51□□□□□ -2.33
LIME1Q9H400 RNU7-102P-201ENST00000458948 62 ntBASIC0.51□□□□□ -2.33
LIME1Q9H400 RNU6-1258P-201ENST00000516911 111 ntBASIC0.51□□□□□ -2.33
LIME1Q9H400 AC011603.4-201ENST00000611325 277 ntBASIC0.51□□□□□ -2.33
LIME1Q9H400 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.5□□□□□ -2.33
LIME1Q9H400 MIR18A-201ENST00000362310 71 ntBASIC0.5□□□□□ -2.33
LIME1Q9H400 Y_RNA.29-201ENST00000362570 113 ntBASIC0.5□□□□□ -2.33
LIME1Q9H400 RNU6-1318P-201ENST00000365389 103 ntBASIC0.5□□□□□ -2.33
LIME1Q9H400 RNY1P8-201ENST00000383970 114 ntBASIC0.5□□□□□ -2.33
LIME1Q9H400 RNU6-949P-201ENST00000384040 107 ntBASIC0.5□□□□□ -2.33
LIME1Q9H400 MIR140-201ENST00000385282 100 ntBASIC0.5□□□□□ -2.33
LIME1Q9H400 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.5□□□□□ -2.33
LIME1Q9H400 RNA5SP237-201ENST00000410414 113 ntBASIC0.5□□□□□ -2.33
LIME1Q9H400 RNU7-156P-201ENST00000517214 74 ntBASIC0.5□□□□□ -2.33
LIME1Q9H400 AP003327.1-201ENST00000529684 127 ntBASIC0.5□□□□□ -2.33
LIME1Q9H400 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0.5□□□□□ -2.33
LIME1Q9H400 MIR3612-201ENST00000579753 87 ntBASIC0.5□□□□□ -2.33
LIME1Q9H400 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.5□□□□□ -2.33
LIME1Q9H400 SNORD115-2-201ENST00000362842 82 ntBASIC0.49□□□□□ -2.33
LIME1Q9H400 SNORD115-20-201ENST00000365099 82 ntBASIC0.49□□□□□ -2.33
LIME1Q9H400 RNU6-364P-201ENST00000384387 107 ntBASIC0.49□□□□□ -2.33
LIME1Q9H400 U8.15-201ENST00000390947 134 ntBASIC0.49□□□□□ -2.33
LIME1Q9H400 Y_RNA.588-201ENST00000391254 102 ntBASIC0.49□□□□□ -2.33
LIME1Q9H400 RNU6-1086P-201ENST00000410930 100 ntBASIC0.49□□□□□ -2.33
LIME1Q9H400 RNA5SP222-201ENST00000411039 105 ntBASIC0.49□□□□□ -2.33
LIME1Q9H400 RNU6-861P-201ENST00000516745 106 ntBASIC0.49□□□□□ -2.33
LIME1Q9H400 DNAJC19P2-201ENST00000593340 302 ntBASIC0.49□□□□□ -2.33
LIME1Q9H400 MIR3658-201ENST00000636291 56 ntBASIC0.49□□□□□ -2.33
LIME1Q9H400 MIR6844-201ENST00000637122 62 ntBASIC0.49□□□□□ -2.33
LIME1Q9H400 Y_RNA.171-201ENST00000363760 102 ntBASIC0.48□□□□□ -2.33
LIME1Q9H400 Y_RNA.357-201ENST00000365487 109 ntBASIC0.48□□□□□ -2.33
LIME1Q9H400 RNU6-945P-201ENST00000383947 107 ntBASIC0.48□□□□□ -2.33
LIME1Q9H400 SNORA18-201ENST00000384416 132 ntBASIC0.48□□□□□ -2.33
LIME1Q9H400 MIR92A1-201ENST00000385233 78 ntBASIC0.48□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 297.5 ms