Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MIR6078-201ENST00000611069 100 ntBASIC1.24□□□□□ -2.21
PTCHD3Q3KNS1 AL365222.1-201ENST00000614661 98 ntBASIC1.24□□□□□ -2.21
PTCHD3Q3KNS1 U2.22-201ENST00000636441 106 ntBASIC1.24□□□□□ -2.21
PTCHD3Q3KNS1 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.23□□□□□ -2.21
PTCHD3Q3KNS1 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
PTCHD3Q3KNS1 RNA5SP205-201ENST00000364653 136 ntBASIC1.23□□□□□ -2.21
PTCHD3Q3KNS1 RNU6-53P-201ENST00000365367 106 ntBASIC1.23□□□□□ -2.21
PTCHD3Q3KNS1 RNU6-1104P-201ENST00000384723 104 ntBASIC1.23□□□□□ -2.21
PTCHD3Q3KNS1 MIR19B1-201ENST00000384829 87 ntBASIC1.23□□□□□ -2.21
PTCHD3Q3KNS1 RNU6-205P-201ENST00000390858 107 ntBASIC1.23□□□□□ -2.21
PTCHD3Q3KNS1 SNORA40.6-201ENST00000391153 128 ntBASIC1.23□□□□□ -2.21
PTCHD3Q3KNS1 AC063976.4-201ENST00000421971 163 ntBASIC1.23□□□□□ -2.21
PTCHD3Q3KNS1 MIR18B-201ENST00000454574 71 ntBASIC1.23□□□□□ -2.21
PTCHD3Q3KNS1 RNU7-35P-201ENST00000517174 62 ntBASIC1.23□□□□□ -2.21
PTCHD3Q3KNS1 MIR3660-201ENST00000584845 100 ntBASIC1.23□□□□□ -2.21
PTCHD3Q3KNS1 MIR6740-201ENST00000618268 113 ntBASIC1.23□□□□□ -2.21
PTCHD3Q3KNS1 AC012676.2-201ENST00000619258 186 ntBASIC1.23□□□□□ -2.21
PTCHD3Q3KNS1 AC008163.1-202ENST00000636004 2889 ntBASIC1.22□□□□□ -2.21
PTCHD3Q3KNS1 SNORA18-201ENST00000384416 132 ntBASIC1.22□□□□□ -2.21
PTCHD3Q3KNS1 RNU6-1081P-201ENST00000384537 107 ntBASIC1.22□□□□□ -2.21
PTCHD3Q3KNS1 MIR222-201ENST00000384992 110 ntBASIC1.22□□□□□ -2.21
PTCHD3Q3KNS1 MT-TF-201ENST00000387314 71 ntBASIC1.22□□□□□ -2.21
PTCHD3Q3KNS1 MIR1287-201ENST00000408492 90 ntBASIC1.22□□□□□ -2.21
PTCHD3Q3KNS1 RNA5SP237-201ENST00000410414 113 ntBASIC1.22□□□□□ -2.21
PTCHD3Q3KNS1 Y_RNA.630-201ENST00000411370 108 ntBASIC1.22□□□□□ -2.21
PTCHD3Q3KNS1 RNU6-313P-201ENST00000516317 112 ntBASIC1.22□□□□□ -2.21
PTCHD3Q3KNS1 MIR3163-201ENST00000581592 73 ntBASIC1.22□□□□□ -2.21
PTCHD3Q3KNS1 AL662814.1-201ENST00000617364 121 ntBASIC1.22□□□□□ -2.21
PTCHD3Q3KNS1 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
PTCHD3Q3KNS1 RNY4P6-201ENST00000363667 96 ntBASIC1.21□□□□□ -2.22
PTCHD3Q3KNS1 SNORA25.9-201ENST00000365087 128 ntBASIC1.21□□□□□ -2.22
PTCHD3Q3KNS1 SNORA2B-201ENST00000384583 137 ntBASIC1.21□□□□□ -2.22
PTCHD3Q3KNS1 RNU6-1154P-201ENST00000391001 104 ntBASIC1.21□□□□□ -2.22
PTCHD3Q3KNS1 MIR548I2-201ENST00000408348 149 ntBASIC1.21□□□□□ -2.22
PTCHD3Q3KNS1 RNU6-1165P-201ENST00000410119 107 ntBASIC1.21□□□□□ -2.22
PTCHD3Q3KNS1 RNA5SP95-201ENST00000410319 137 ntBASIC1.21□□□□□ -2.22
PTCHD3Q3KNS1 RNU2-51P-201ENST00000410708 197 ntBASIC1.21□□□□□ -2.22
PTCHD3Q3KNS1 MIR548AE2-201ENST00000583456 67 ntBASIC1.21□□□□□ -2.22
PTCHD3Q3KNS1 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
PTCHD3Q3KNS1 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.2□□□□□ -2.22
PTCHD3Q3KNS1 MIR30D-201ENST00000362283 70 ntBASIC1.2□□□□□ -2.22
PTCHD3Q3KNS1 RNU6-834P-201ENST00000362367 110 ntBASIC1.2□□□□□ -2.22
PTCHD3Q3KNS1 Y_RNA.261-201ENST00000364631 102 ntBASIC1.2□□□□□ -2.22
PTCHD3Q3KNS1 RNU6-342P-201ENST00000384521 104 ntBASIC1.2□□□□□ -2.22
PTCHD3Q3KNS1 Y_RNA.525-201ENST00000384570 113 ntBASIC1.2□□□□□ -2.22
PTCHD3Q3KNS1 AC022523.2-201ENST00000561045 150 ntBASIC1.2□□□□□ -2.22
PTCHD3Q3KNS1 RNU1-124P-201ENST00000363861 145 ntBASIC1.19□□□□□ -2.22
PTCHD3Q3KNS1 SNORA25.8-201ENST00000364831 128 ntBASIC1.19□□□□□ -2.22
PTCHD3Q3KNS1 Y_RNA.353-201ENST00000365440 108 ntBASIC1.19□□□□□ -2.22
PTCHD3Q3KNS1 SNORA22C-201ENST00000384614 134 ntBASIC1.19□□□□□ -2.22
PTCHD3Q3KNS1 RNU6-939P-201ENST00000384634 107 ntBASIC1.19□□□□□ -2.22
PTCHD3Q3KNS1 MIR499A-201ENST00000384903 122 ntBASIC1.19□□□□□ -2.22
PTCHD3Q3KNS1 MIR618-201ENST00000385287 98 ntBASIC1.19□□□□□ -2.22
PTCHD3Q3KNS1 MT-TI-201ENST00000387365 69 ntBASIC1.19□□□□□ -2.22
PTCHD3Q3KNS1 SNORD77B-201ENST00000391112 67 ntBASIC1.19□□□□□ -2.22
PTCHD3Q3KNS1 RNU7-79P-201ENST00000516082 62 ntBASIC1.19□□□□□ -2.22
PTCHD3Q3KNS1 AC019288.1-201ENST00000557918 224 ntBASIC1.19□□□□□ -2.22
PTCHD3Q3KNS1 AC141846.1-201ENST00000568348 142 ntBASIC1.19□□□□□ -2.22
PTCHD3Q3KNS1 AL359881.1-201ENST00000602916 267 ntBASIC1.19□□□□□ -2.22
PTCHD3Q3KNS1 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
PTCHD3Q3KNS1 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.18□□□□□ -2.22
PTCHD3Q3KNS1 RNU6-1237P-201ENST00000384777 107 ntBASIC1.18□□□□□ -2.22
PTCHD3Q3KNS1 RNA5SP404-201ENST00000517118 132 ntBASIC1.18□□□□□ -2.22
PTCHD3Q3KNS1 RNU6-949P-201ENST00000384040 107 ntBASIC1.17□□□□□ -2.22
PTCHD3Q3KNS1 MIR200A-201ENST00000384875 90 ntBASIC1.17□□□□□ -2.22
PTCHD3Q3KNS1 RNU7-6P-201ENST00000516845 62 ntBASIC1.17□□□□□ -2.22
PTCHD3Q3KNS1 AC023827.1-201ENST00000569247 97 ntBASIC1.17□□□□□ -2.22
PTCHD3Q3KNS1 MIR4679-2-201ENST00000578358 77 ntBASIC1.17□□□□□ -2.22
PTCHD3Q3KNS1 SNORA4-201ENST00000584302 138 ntBASIC1.17□□□□□ -2.22
PTCHD3Q3KNS1 AL670379.3-201ENST00000605040 251 ntBASIC1.17□□□□□ -2.22
PTCHD3Q3KNS1 AC087741.2-201ENST00000619415 172 ntBASIC1.17□□□□□ -2.22
PTCHD3Q3KNS1 SNORD115-19-201ENST00000363098 82 ntBASIC1.16□□□□□ -2.22
PTCHD3Q3KNS1 SNORD115-18-201ENST00000363293 82 ntBASIC1.16□□□□□ -2.22
PTCHD3Q3KNS1 SNORD115-17-201ENST00000364612 82 ntBASIC1.16□□□□□ -2.22
PTCHD3Q3KNS1 RNY1P13-201ENST00000365030 105 ntBASIC1.16□□□□□ -2.22
PTCHD3Q3KNS1 RNU6-934P-201ENST00000365154 107 ntBASIC1.16□□□□□ -2.22
PTCHD3Q3KNS1 SNORA32-201ENST00000384072 121 ntBASIC1.16□□□□□ -2.22
PTCHD3Q3KNS1 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.16□□□□□ -2.22
PTCHD3Q3KNS1 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.16□□□□□ -2.22
PTCHD3Q3KNS1 MIR1276-201ENST00000408707 83 ntBASIC1.16□□□□□ -2.22
PTCHD3Q3KNS1 Y_RNA.649-201ENST00000459077 103 ntBASIC1.16□□□□□ -2.22
PTCHD3Q3KNS1 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.16□□□□□ -2.22
PTCHD3Q3KNS1 RNA5SP102-201ENST00000516865 106 ntBASIC1.16□□□□□ -2.22
PTCHD3Q3KNS1 MIR548AI-201ENST00000579940 88 ntBASIC1.16□□□□□ -2.22
PTCHD3Q3KNS1 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.16□□□□□ -2.22
PTCHD3Q3KNS1 SNORD114-10-201ENST00000363409 72 ntBASIC1.15□□□□□ -2.23
PTCHD3Q3KNS1 MIR548A3-201ENST00000385297 97 ntBASIC1.15□□□□□ -2.23
PTCHD3Q3KNS1 MIR1270-201ENST00000459320 83 ntBASIC1.15□□□□□ -2.23
PTCHD3Q3KNS1 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.15□□□□□ -2.23
PTCHD3Q3KNS1 FAM71BP1-201ENST00000604431 523 ntBASIC1.15□□□□□ -2.23
PTCHD3Q3KNS1 MIR548D2-201ENST00000384955 97 ntBASIC1.14□□□□□ -2.23
PTCHD3Q3KNS1 RPS26P5-201ENST00000418544 335 ntBASIC1.14□□□□□ -2.23
PTCHD3Q3KNS1 FABP5P4-201ENST00000437203 171 ntBASIC1.14□□□□□ -2.23
PTCHD3Q3KNS1 SNORD33.1-201ENST00000516213 88 ntBASIC1.14□□□□□ -2.23
PTCHD3Q3KNS1 uc_338.6-201ENST00000613544 171 ntBASIC1.14□□□□□ -2.23
PTCHD3Q3KNS1 AL391516.1-201ENST00000554380 2449 ntBASIC1.13□□□□□ -2.23
PTCHD3Q3KNS1 Y_RNA.273-201ENST00000364703 102 ntBASIC1.13□□□□□ -2.23
PTCHD3Q3KNS1 Y_RNA.291-201ENST00000364886 113 ntBASIC1.13□□□□□ -2.23
PTCHD3Q3KNS1 RNU6-447P-201ENST00000410293 104 ntBASIC1.13□□□□□ -2.23
PTCHD3Q3KNS1 RNU6-1118P-201ENST00000410382 104 ntBASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 221.4 ms