Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC010487.4-201ENST00000637027 61 ntBASIC0.65□□□□□ -2.31
LIME1Q9H400 MIR924-201ENST00000638017 53 ntBASIC0.65□□□□□ -2.31
LIME1Q9H400 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.65□□□□□ -2.31
LIME1Q9H400 RNU6-1020P-201ENST00000363684 107 ntBASIC0.64□□□□□ -2.31
LIME1Q9H400 Y_RNA.251-201ENST00000364551 99 ntBASIC0.64□□□□□ -2.31
LIME1Q9H400 Y_RNA.274-201ENST00000364714 101 ntBASIC0.64□□□□□ -2.31
LIME1Q9H400 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
LIME1Q9H400 MIR100-201ENST00000385259 80 ntBASIC0.64□□□□□ -2.31
LIME1Q9H400 SNORD105-201ENST00000386910 85 ntBASIC0.64□□□□□ -2.31
LIME1Q9H400 snosnR66.1-201ENST00000391095 99 ntBASIC0.64□□□□□ -2.31
LIME1Q9H400 RNA5SP261-201ENST00000410536 106 ntBASIC0.64□□□□□ -2.31
LIME1Q9H400 AL606490.4-201ENST00000423117 127 ntBASIC0.64□□□□□ -2.31
LIME1Q9H400 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.64□□□□□ -2.31
LIME1Q9H400 AC004812.1-201ENST00000540773 146 ntBASIC0.64□□□□□ -2.31
LIME1Q9H400 MIR4431-201ENST00000579990 94 ntBASIC0.64□□□□□ -2.31
LIME1Q9H400 MIR4653-201ENST00000585107 83 ntBASIC0.64□□□□□ -2.31
LIME1Q9H400 MIR1-1-201ENST00000362147 71 ntBASIC0.63□□□□□ -2.31
LIME1Q9H400 Y_RNA.401-201ENST00000383965 117 ntBASIC0.63□□□□□ -2.31
LIME1Q9H400 RNU6-1319P-201ENST00000390855 104 ntBASIC0.63□□□□□ -2.31
LIME1Q9H400 RNU6-747P-201ENST00000390928 104 ntBASIC0.63□□□□□ -2.31
LIME1Q9H400 RNU6-241P-201ENST00000391148 104 ntBASIC0.63□□□□□ -2.31
LIME1Q9H400 SNORD99-201ENST00000408612 74 ntBASIC0.63□□□□□ -2.31
LIME1Q9H400 RNU6-1165P-201ENST00000410119 107 ntBASIC0.63□□□□□ -2.31
LIME1Q9H400 RNU6-177P-201ENST00000411257 104 ntBASIC0.63□□□□□ -2.31
LIME1Q9H400 SNORD83.1-201ENST00000411362 77 ntBASIC0.63□□□□□ -2.31
LIME1Q9H400 AC244098.3-201ENST00000424803 96 ntBASIC0.63□□□□□ -2.31
LIME1Q9H400 MIR18B-201ENST00000454574 71 ntBASIC0.63□□□□□ -2.31
LIME1Q9H400 AC141273.2-201ENST00000618989 130 ntBASIC0.63□□□□□ -2.31
LIME1Q9H400 AL109933.3-201ENST00000619095 188 ntBASIC0.63□□□□□ -2.31
LIME1Q9H400 MIR302B-201ENST00000362188 73 ntBASIC0.62□□□□□ -2.31
LIME1Q9H400 MIR30D-201ENST00000362283 70 ntBASIC0.62□□□□□ -2.31
LIME1Q9H400 RNU6-934P-201ENST00000365154 107 ntBASIC0.62□□□□□ -2.31
LIME1Q9H400 MIR588-201ENST00000384900 83 ntBASIC0.62□□□□□ -2.31
LIME1Q9H400 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.62□□□□□ -2.31
LIME1Q9H400 AC098934.3-201ENST00000430450 190 ntBASIC0.62□□□□□ -2.31
LIME1Q9H400 SEPT7P4-201ENST00000437076 306 ntBASIC0.62□□□□□ -2.31
LIME1Q9H400 RNU7-45P-201ENST00000459460 63 ntBASIC0.62□□□□□ -2.31
LIME1Q9H400 MIR4711-201ENST00000578274 70 ntBASIC0.62□□□□□ -2.31
LIME1Q9H400 AC104465.1-201ENST00000611365 139 ntBASIC0.62□□□□□ -2.31
LIME1Q9H400 MIR6866-201ENST00000638146 69 ntBASIC0.62□□□□□ -2.31
LIME1Q9H400 AC010332.2-201ENST00000613083 1904 ntBASIC0.62□□□□□ -2.31
LIME1Q9H400 MIR342-201ENST00000362212 99 ntBASIC0.61□□□□□ -2.31
LIME1Q9H400 Y_RNA.68-201ENST00000362881 102 ntBASIC0.61□□□□□ -2.31
LIME1Q9H400 Y_RNA.188-201ENST00000363952 111 ntBASIC0.61□□□□□ -2.31
LIME1Q9H400 SNORA25.7-201ENST00000364375 127 ntBASIC0.61□□□□□ -2.31
LIME1Q9H400 Y_RNA.233-201ENST00000364407 101 ntBASIC0.61□□□□□ -2.31
LIME1Q9H400 RNU6-312P-201ENST00000364629 107 ntBASIC0.61□□□□□ -2.31
LIME1Q9H400 RNU6-110P-201ENST00000384508 104 ntBASIC0.61□□□□□ -2.31
LIME1Q9H400 MT-TF-201ENST00000387314 71 ntBASIC0.61□□□□□ -2.31
LIME1Q9H400 RNU6-1219P-201ENST00000516143 112 ntBASIC0.61□□□□□ -2.31
LIME1Q9H400 RNU6-1149P-201ENST00000516810 97 ntBASIC0.61□□□□□ -2.31
LIME1Q9H400 MIR4771-2-201ENST00000577758 74 ntBASIC0.61□□□□□ -2.31
LIME1Q9H400 MIR4804-201ENST00000581683 73 ntBASIC0.61□□□□□ -2.31
LIME1Q9H400 MIR4771-1-201ENST00000582617 74 ntBASIC0.61□□□□□ -2.31
LIME1Q9H400 RNU6-379P-201ENST00000363813 104 ntBASIC0.6□□□□□ -2.31
LIME1Q9H400 MIR573-201ENST00000384964 99 ntBASIC0.6□□□□□ -2.31
LIME1Q9H400 SNORD12C-201ENST00000386307 89 ntBASIC0.6□□□□□ -2.31
LIME1Q9H400 COX6CP6-201ENST00000490840 228 ntBASIC0.6□□□□□ -2.31
LIME1Q9H400 Y_RNA.681-201ENST00000516445 113 ntBASIC0.6□□□□□ -2.31
LIME1Q9H400 RNU6-1271P-201ENST00000517049 105 ntBASIC0.6□□□□□ -2.31
LIME1Q9H400 MIR4676-201ENST00000583078 72 ntBASIC0.6□□□□□ -2.31
LIME1Q9H400 AC072026.1-201ENST00000605023 201 ntBASIC0.6□□□□□ -2.31
LIME1Q9H400 AC020891.4-201ENST00000605745 93 ntBASIC0.6□□□□□ -2.31
LIME1Q9H400 MIR8087-201ENST00000612745 78 ntBASIC0.6□□□□□ -2.31
LIME1Q9H400 AC021613.1-201ENST00000623880 111 ntBASIC0.6□□□□□ -2.31
LIME1Q9H400 AL596211.1-201ENST00000569873 2277 ntBASIC0.6□□□□□ -2.31
LIME1Q9H400 Y_RNA.52-201ENST00000362760 96 ntBASIC0.59□□□□□ -2.31
LIME1Q9H400 RNU6-716P-201ENST00000365621 103 ntBASIC0.59□□□□□ -2.31
LIME1Q9H400 RNU6-768P-201ENST00000384683 107 ntBASIC0.59□□□□□ -2.31
LIME1Q9H400 RNU1-119P-201ENST00000391122 165 ntBASIC0.59□□□□□ -2.31
LIME1Q9H400 MIR1197-201ENST00000408818 88 ntBASIC0.59□□□□□ -2.31
LIME1Q9H400 AC015818.7-201ENST00000428754 109 ntBASIC0.59□□□□□ -2.31
LIME1Q9H400 AC087499.7-201ENST00000441958 109 ntBASIC0.59□□□□□ -2.31
LIME1Q9H400 AC107027.2-201ENST00000512197 115 ntBASIC0.59□□□□□ -2.31
LIME1Q9H400 RNA5SP236-201ENST00000516169 116 ntBASIC0.59□□□□□ -2.31
LIME1Q9H400 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.58□□□□□ -2.32
LIME1Q9H400 HSBP1P2-201ENST00000299671 229 ntBASIC0.58□□□□□ -2.32
LIME1Q9H400 RNA5SP347-201ENST00000362445 119 ntBASIC0.58□□□□□ -2.32
LIME1Q9H400 Y_RNA.297-201ENST00000364950 91 ntBASIC0.58□□□□□ -2.32
LIME1Q9H400 RNU6ATAC23P-201ENST00000408448 123 ntBASIC0.58□□□□□ -2.32
LIME1Q9H400 Y_RNA.644-201ENST00000459006 113 ntBASIC0.58□□□□□ -2.32
LIME1Q9H400 Y_RNA.674-201ENST00000516362 113 ntBASIC0.58□□□□□ -2.32
LIME1Q9H400 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.58□□□□□ -2.32
LIME1Q9H400 MTND5P32-201ENST00000560711 1802 ntBASIC0.58□□□□□ -2.32
LIME1Q9H400 SNORA22.1-201ENST00000362701 134 ntBASIC0.57□□□□□ -2.32
LIME1Q9H400 RNA5SP257-201ENST00000363023 116 ntBASIC0.57□□□□□ -2.32
LIME1Q9H400 RNA5SP499-201ENST00000363982 119 ntBASIC0.57□□□□□ -2.32
LIME1Q9H400 RNU6-200P-201ENST00000364743 107 ntBASIC0.57□□□□□ -2.32
LIME1Q9H400 Y_RNA.515-201ENST00000384535 112 ntBASIC0.57□□□□□ -2.32
LIME1Q9H400 Y_RNA.552-201ENST00000384665 112 ntBASIC0.57□□□□□ -2.32
LIME1Q9H400 MIR520H-201ENST00000385126 88 ntBASIC0.57□□□□□ -2.32
LIME1Q9H400 MTND5P15-201ENST00000434246 349 ntBASIC0.57□□□□□ -2.32
LIME1Q9H400 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.57□□□□□ -2.32
LIME1Q9H400 RNU7-185P-201ENST00000459215 60 ntBASIC0.57□□□□□ -2.32
LIME1Q9H400 RNU6-977P-201ENST00000516411 103 ntBASIC0.57□□□□□ -2.32
LIME1Q9H400 RNU6-229P-201ENST00000516614 102 ntBASIC0.57□□□□□ -2.32
LIME1Q9H400 Y_RNA.700-201ENST00000516806 100 ntBASIC0.57□□□□□ -2.32
LIME1Q9H400 AC022559.1-201ENST00000520905 205 ntBASIC0.57□□□□□ -2.32
LIME1Q9H400 MIR3152-201ENST00000579801 74 ntBASIC0.57□□□□□ -2.32
LIME1Q9H400 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 172 ms