Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 RNU6-321P-201ENST00000410912 106 ntBASIC1.82□□□□□ -2.12
USP53Q70EK8 RNA5SP489-201ENST00000410986 109 ntBASIC1.82□□□□□ -2.12
USP53Q70EK8 BTF3P4-201ENST00000418852 495 ntBASIC1.82□□□□□ -2.12
USP53Q70EK8 AL133373.1-201ENST00000497098 94 ntBASIC1.82□□□□□ -2.12
USP53Q70EK8 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.82□□□□□ -2.12
USP53Q70EK8 RNA5SP33-201ENST00000516687 98 ntBASIC1.82□□□□□ -2.12
USP53Q70EK8 AP003716.2-201ENST00000528260 108 ntBASIC1.82□□□□□ -2.12
USP53Q70EK8 AL512310.8-201ENST00000550183 120 ntBASIC1.82□□□□□ -2.12
USP53Q70EK8 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.82□□□□□ -2.12
USP53Q70EK8 MIR8081-201ENST00000611533 95 ntBASIC1.82□□□□□ -2.12
USP53Q70EK8 AL035470.1-201ENST00000622571 220 ntBASIC1.82□□□□□ -2.12
USP53Q70EK8 Y_RNA.85-201ENST00000363014 111 ntBASIC1.81□□□□□ -2.12
USP53Q70EK8 RNY1P10-201ENST00000363268 113 ntBASIC1.81□□□□□ -2.12
USP53Q70EK8 SNORD38B-201ENST00000384690 67 ntBASIC1.81□□□□□ -2.12
USP53Q70EK8 RPS27P16-201ENST00000425758 201 ntBASIC1.81□□□□□ -2.12
USP53Q70EK8 AC245047.7-201ENST00000440265 293 ntBASIC1.81□□□□□ -2.12
USP53Q70EK8 SNORD13-201ENST00000459299 104 ntBASIC1.81□□□□□ -2.12
USP53Q70EK8 TRMT112P2-201ENST00000512910 132 ntBASIC1.81□□□□□ -2.12
USP53Q70EK8 RNA5SP445-201ENST00000515889 115 ntBASIC1.81□□□□□ -2.12
USP53Q70EK8 RNU7-6P-201ENST00000516845 62 ntBASIC1.81□□□□□ -2.12
USP53Q70EK8 RNU6-165P-201ENST00000517170 99 ntBASIC1.81□□□□□ -2.12
USP53Q70EK8 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.81□□□□□ -2.12
USP53Q70EK8 AC087741.2-201ENST00000619415 172 ntBASIC1.81□□□□□ -2.12
USP53Q70EK8 SNORD38B-202ENST00000625943 69 ntBASIC1.81□□□□□ -2.12
USP53Q70EK8 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.81□□□□□ -2.12
USP53Q70EK8 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.81□□□□□ -2.12
USP53Q70EK8 SNORA25.3-201ENST00000363205 127 ntBASIC1.8□□□□□ -2.12
USP53Q70EK8 Y_RNA.344-201ENST00000365381 112 ntBASIC1.8□□□□□ -2.12
USP53Q70EK8 SNORA22-201ENST00000383907 134 ntBASIC1.8□□□□□ -2.12
USP53Q70EK8 MIR499A-201ENST00000384903 122 ntBASIC1.8□□□□□ -2.12
USP53Q70EK8 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.8□□□□□ -2.12
USP53Q70EK8 RN7SL274P-201ENST00000492268 272 ntBASIC1.8□□□□□ -2.12
USP53Q70EK8 MIR548AE2-201ENST00000583456 67 ntBASIC1.8□□□□□ -2.12
USP53Q70EK8 PRELID3BP2-201ENST00000605362 201 ntBASIC1.8□□□□□ -2.12
USP53Q70EK8 AL589743.1-201ENST00000551932 2712 ntBASIC1.8□□□□□ -2.12
USP53Q70EK8 SNORD115-19-201ENST00000363098 82 ntBASIC1.79□□□□□ -2.12
USP53Q70EK8 SNORD115-18-201ENST00000363293 82 ntBASIC1.79□□□□□ -2.12
USP53Q70EK8 SNORD115-17-201ENST00000364612 82 ntBASIC1.79□□□□□ -2.12
USP53Q70EK8 SNORA25.9-201ENST00000365087 128 ntBASIC1.79□□□□□ -2.12
USP53Q70EK8 PDCD5P2-201ENST00000507570 312 ntBASIC1.79□□□□□ -2.12
USP53Q70EK8 AC084768.2-201ENST00000622736 221 ntBASIC1.79□□□□□ -2.12
USP53Q70EK8 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.79□□□□□ -2.12
USP53Q70EK8 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
USP53Q70EK8 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.78□□□□□ -2.12
USP53Q70EK8 SNORA63.4-201ENST00000362763 126 ntBASIC1.78□□□□□ -2.12
USP53Q70EK8 RNU6-1107P-201ENST00000364817 104 ntBASIC1.78□□□□□ -2.12
USP53Q70EK8 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
USP53Q70EK8 SUMO2P12-201ENST00000405924 140 ntBASIC1.78□□□□□ -2.12
USP53Q70EK8 RPL39P34-201ENST00000477141 156 ntBASIC1.78□□□□□ -2.12
USP53Q70EK8 AC024614.2-201ENST00000577584 372 ntBASIC1.78□□□□□ -2.12
USP53Q70EK8 AL359821.1-201ENST00000605519 182 ntBASIC1.78□□□□□ -2.12
USP53Q70EK8 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
USP53Q70EK8 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.78□□□□□ -2.13
USP53Q70EK8 SNORA63.5-201ENST00000363548 123 ntBASIC1.77□□□□□ -2.13
USP53Q70EK8 RNU6-396P-201ENST00000365369 105 ntBASIC1.77□□□□□ -2.13
USP53Q70EK8 Y_RNA.355-201ENST00000365462 98 ntBASIC1.77□□□□□ -2.13
USP53Q70EK8 MIR1270-201ENST00000459320 83 ntBASIC1.77□□□□□ -2.13
USP53Q70EK8 RNU11-2P-201ENST00000516898 142 ntBASIC1.77□□□□□ -2.13
USP53Q70EK8 RNU6-902P-201ENST00000517212 91 ntBASIC1.77□□□□□ -2.13
USP53Q70EK8 MIR8070-201ENST00000616510 88 ntBASIC1.77□□□□□ -2.13
USP53Q70EK8 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
USP53Q70EK8 Y_RNA.49-201ENST00000362714 112 ntBASIC1.76□□□□□ -2.13
USP53Q70EK8 RNA5SP264-201ENST00000363115 107 ntBASIC1.76□□□□□ -2.13
USP53Q70EK8 RNU6-153P-201ENST00000364422 104 ntBASIC1.76□□□□□ -2.13
USP53Q70EK8 RNU6-342P-201ENST00000384521 104 ntBASIC1.76□□□□□ -2.13
USP53Q70EK8 MIR9-3-201ENST00000385084 90 ntBASIC1.76□□□□□ -2.13
USP53Q70EK8 MIR1185-1-201ENST00000408598 86 ntBASIC1.76□□□□□ -2.13
USP53Q70EK8 AC244023.1-201ENST00000426884 112 ntBASIC1.76□□□□□ -2.13
USP53Q70EK8 AC242498.1-201ENST00000604134 111 ntBASIC1.76□□□□□ -2.13
USP53Q70EK8 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
USP53Q70EK8 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.75□□□□□ -2.13
USP53Q70EK8 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.75□□□□□ -2.13
USP53Q70EK8 MIR103A2-201ENST00000362154 78 ntBASIC1.75□□□□□ -2.13
USP53Q70EK8 Y_RNA.323-201ENST00000365157 109 ntBASIC1.75□□□□□ -2.13
USP53Q70EK8 SNORA18-201ENST00000384416 132 ntBASIC1.75□□□□□ -2.13
USP53Q70EK8 SNORD77B-201ENST00000391112 67 ntBASIC1.75□□□□□ -2.13
USP53Q70EK8 RNU4-62P-201ENST00000410125 130 ntBASIC1.75□□□□□ -2.13
USP53Q70EK8 RPL31P63-201ENST00000422565 375 ntBASIC1.75□□□□□ -2.13
USP53Q70EK8 RPS29P11-201ENST00000496507 171 ntBASIC1.75□□□□□ -2.13
USP53Q70EK8 RNU7-35P-201ENST00000517174 62 ntBASIC1.75□□□□□ -2.13
USP53Q70EK8 MIR3618-201ENST00000580330 88 ntBASIC1.75□□□□□ -2.13
USP53Q70EK8 RNU6-94P-201ENST00000607728 107 ntBASIC1.75□□□□□ -2.13
USP53Q70EK8 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
USP53Q70EK8 SNORA32-201ENST00000384072 121 ntBASIC1.74□□□□□ -2.13
USP53Q70EK8 MT-TN-201ENST00000387400 73 ntBASIC1.74□□□□□ -2.13
USP53Q70EK8 SNORA67.5-201ENST00000391036 107 ntBASIC1.74□□□□□ -2.13
USP53Q70EK8 RNU6-1054P-201ENST00000411293 104 ntBASIC1.74□□□□□ -2.13
USP53Q70EK8 AP1B1P2-201ENST00000416196 106 ntBASIC1.74□□□□□ -2.13
USP53Q70EK8 MIR2115-201ENST00000516657 100 ntBASIC1.74□□□□□ -2.13
USP53Q70EK8 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.74□□□□□ -2.13
USP53Q70EK8 MIR4264-201ENST00000583520 66 ntBASIC1.74□□□□□ -2.13
USP53Q70EK8 Y_RNA.773-201ENST00000607168 90 ntBASIC1.74□□□□□ -2.13
USP53Q70EK8 AL162726.3-218ENST00000636401 95 ntBASIC1.74□□□□□ -2.13
USP53Q70EK8 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.74□□□□□ -2.13
USP53Q70EK8 Y_RNA.116-201ENST00000363292 103 ntBASIC1.73□□□□□ -2.13
USP53Q70EK8 SNORA16.1-201ENST00000364597 132 ntBASIC1.73□□□□□ -2.13
USP53Q70EK8 U8.6-201ENST00000364939 135 ntBASIC1.73□□□□□ -2.13
USP53Q70EK8 Y_RNA.309-201ENST00000365046 111 ntBASIC1.73□□□□□ -2.13
USP53Q70EK8 MIR518E-201ENST00000385252 88 ntBASIC1.73□□□□□ -2.13
USP53Q70EK8 RN7SKP88-201ENST00000516847 250 ntBASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 175.6 ms