Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 Y_RNA.432-201ENST00000384087 111 ntBASIC0.08□□□□□ -2.4
MSH6P52701 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.08□□□□□ -2.4
MSH6P52701 RNU2-59P-201ENST00000410482 191 ntBASIC0.08□□□□□ -2.4
MSH6P52701 RNU6-1338P-201ENST00000516328 91 ntBASIC0.08□□□□□ -2.4
MSH6P52701 MIR4493-201ENST00000584016 73 ntBASIC0.08□□□□□ -2.4
MSH6P52701 AP001180.6-201ENST00000584918 159 ntBASIC0.08□□□□□ -2.4
MSH6P52701 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.08□□□□□ -2.4
MSH6P52701 Y_RNA.152-201ENST00000363578 100 ntBASIC0.07□□□□□ -2.4
MSH6P52701 RNU5E-4P-201ENST00000364931 120 ntBASIC0.07□□□□□ -2.4
MSH6P52701 Y_RNA.571-201ENST00000384753 98 ntBASIC0.07□□□□□ -2.4
MSH6P52701 MIR644A-201ENST00000385262 94 ntBASIC0.07□□□□□ -2.4
MSH6P52701 Y_RNA.622-201ENST00000411091 108 ntBASIC0.07□□□□□ -2.4
MSH6P52701 AC073261.1-201ENST00000429409 121 ntBASIC0.07□□□□□ -2.4
MSH6P52701 RNU7-80P-201ENST00000459562 61 ntBASIC0.07□□□□□ -2.4
MSH6P52701 MIR3152-201ENST00000579801 74 ntBASIC0.07□□□□□ -2.4
MSH6P52701 AC108676.2-201ENST00000605225 163 ntBASIC0.07□□□□□ -2.4
MSH6P52701 AL662814.1-201ENST00000617364 121 ntBASIC0.07□□□□□ -2.4
MSH6P52701 AL160413.1-201ENST00000622780 310 ntBASIC0.07□□□□□ -2.4
MSH6P52701 AC134503.1-201ENST00000633048 54 ntBASIC0.07□□□□□ -2.4
MSH6P52701 MIR376A2-201ENST00000636782 80 ntBASIC0.07□□□□□ -2.4
MSH6P52701 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.06□□□□□ -2.4
MSH6P52701 Y_RNA.23-201ENST00000362496 106 ntBASIC0.06□□□□□ -2.4
MSH6P52701 snoU2_19.4-201ENST00000364329 80 ntBASIC0.06□□□□□ -2.4
MSH6P52701 Y_RNA.527-201ENST00000384573 102 ntBASIC0.06□□□□□ -2.4
MSH6P52701 U8.15-201ENST00000390947 134 ntBASIC0.06□□□□□ -2.4
MSH6P52701 RNU6-1228P-201ENST00000391014 107 ntBASIC0.06□□□□□ -2.4
MSH6P52701 RNU6-1203P-201ENST00000410703 110 ntBASIC0.06□□□□□ -2.4
MSH6P52701 Y_RNA.617-201ENST00000410920 90 ntBASIC0.06□□□□□ -2.4
MSH6P52701 Y_RNA.618-201ENST00000410949 107 ntBASIC0.06□□□□□ -2.4
MSH6P52701 AL512326.2-201ENST00000426359 151 ntBASIC0.06□□□□□ -2.4
MSH6P52701 RNA5SP67-201ENST00000516422 131 ntBASIC0.06□□□□□ -2.4
MSH6P52701 RNU6-453P-201ENST00000516819 85 ntBASIC0.06□□□□□ -2.4
MSH6P52701 SCARNA24.2-201ENST00000516968 130 ntBASIC0.06□□□□□ -2.4
MSH6P52701 Y_RNA.711-201ENST00000516993 102 ntBASIC0.06□□□□□ -2.4
MSH6P52701 AC112693.2-201ENST00000556538 232 ntBASIC0.06□□□□□ -2.4
MSH6P52701 Y_RNA.117-201ENST00000363294 101 ntBASIC0.06□□□□□ -2.4
MSH6P52701 RNU6-1099P-201ENST00000363533 107 ntBASIC0.06□□□□□ -2.4
MSH6P52701 MIR616-201ENST00000385293 97 ntBASIC0.06□□□□□ -2.4
MSH6P52701 AL606845.1-201ENST00000404881 255 ntBASIC0.06□□□□□ -2.4
MSH6P52701 RNA5SP237-201ENST00000410414 113 ntBASIC0.06□□□□□ -2.4
MSH6P52701 AC104692.1-201ENST00000472406 90 ntBASIC0.06□□□□□ -2.4
MSH6P52701 RNA5SP268-201ENST00000516828 124 ntBASIC0.06□□□□□ -2.4
MSH6P52701 MIR409-201ENST00000362237 79 ntBASIC0.05□□□□□ -2.4
MSH6P52701 Y_RNA.13-201ENST00000362403 112 ntBASIC0.05□□□□□ -2.4
MSH6P52701 RNU6-597P-201ENST00000365620 102 ntBASIC0.05□□□□□ -2.4
MSH6P52701 RNU6-1292P-201ENST00000383856 107 ntBASIC0.05□□□□□ -2.4
MSH6P52701 Y_RNA.454-201ENST00000384224 113 ntBASIC0.05□□□□□ -2.4
MSH6P52701 Y_RNA.542-201ENST00000384641 111 ntBASIC0.05□□□□□ -2.4
MSH6P52701 Y_RNA.588-201ENST00000391254 102 ntBASIC0.05□□□□□ -2.4
MSH6P52701 MTATP6P23-201ENST00000440153 476 ntBASIC0.05□□□□□ -2.4
MSH6P52701 SNORD2.1-201ENST00000458762 69 ntBASIC0.05□□□□□ -2.4
MSH6P52701 RNU6-469P-201ENST00000516253 101 ntBASIC0.05□□□□□ -2.4
MSH6P52701 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC0.05□□□□□ -2.4
MSH6P52701 MIR6082-201ENST00000613604 109 ntBASIC0.05□□□□□ -2.4
MSH6P52701 AC091932.4-201ENST00000623386 200 ntBASIC0.05□□□□□ -2.4
MSH6P52701 SNORA9.1-201ENST00000362412 131 ntBASIC0.04□□□□□ -2.4
MSH6P52701 Y_RNA.460-201ENST00000384255 102 ntBASIC0.04□□□□□ -2.4
MSH6P52701 AC096949.1-201ENST00000412047 152 ntBASIC0.04□□□□□ -2.4
MSH6P52701 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.04□□□□□ -2.4
MSH6P52701 MTND5P22-201ENST00000458380 195 ntBASIC0.04□□□□□ -2.4
MSH6P52701 AC141846.1-201ENST00000568348 142 ntBASIC0.04□□□□□ -2.4
MSH6P52701 MIR4680-201ENST00000580906 66 ntBASIC0.04□□□□□ -2.4
MSH6P52701 MIR4491-201ENST00000581087 68 ntBASIC0.04□□□□□ -2.4
MSH6P52701 MIR3129-201ENST00000581095 76 ntBASIC0.04□□□□□ -2.4
MSH6P52701 MIR5197-201ENST00000583721 112 ntBASIC0.04□□□□□ -2.4
MSH6P52701 MIR6828-201ENST00000636181 60 ntBASIC0.04□□□□□ -2.4
MSH6P52701 MIR411-201ENST00000362239 96 ntBASIC0.03□□□□□ -2.4
MSH6P52701 Y_RNA.44-201ENST00000362676 108 ntBASIC0.03□□□□□ -2.4
MSH6P52701 SNORD114-16-201ENST00000363044 70 ntBASIC0.03□□□□□ -2.4
MSH6P52701 RNU6-403P-201ENST00000363163 104 ntBASIC0.03□□□□□ -2.4
MSH6P52701 Y_RNA.153-201ENST00000363615 91 ntBASIC0.03□□□□□ -2.4
MSH6P52701 Y_RNA.174-201ENST00000363781 105 ntBASIC0.03□□□□□ -2.4
MSH6P52701 Y_RNA.199-201ENST00000364014 102 ntBASIC0.03□□□□□ -2.4
MSH6P52701 Y_RNA.610-201ENST00000410681 103 ntBASIC0.03□□□□□ -2.4
MSH6P52701 RNU6-651P-201ENST00000411040 105 ntBASIC0.03□□□□□ -2.4
MSH6P52701 AC113618.1-201ENST00000416747 285 ntBASIC0.03□□□□□ -2.4
MSH6P52701 AC069271.1-201ENST00000445577 156 ntBASIC0.03□□□□□ -2.4
MSH6P52701 RPL39P25-201ENST00000449384 154 ntBASIC0.03□□□□□ -2.4
MSH6P52701 RNU6-765P-201ENST00000516916 99 ntBASIC0.03□□□□□ -2.4
MSH6P52701 Y_RNA.82-201ENST00000363000 102 ntBASIC0.02□□□□□ -2.41
MSH6P52701 Y_RNA.92-201ENST00000363043 102 ntBASIC0.02□□□□□ -2.41
MSH6P52701 RNA5SP214-201ENST00000363378 118 ntBASIC0.02□□□□□ -2.41
MSH6P52701 Y_RNA.138-201ENST00000363462 102 ntBASIC0.02□□□□□ -2.41
MSH6P52701 SNORD114-9-201ENST00000364370 72 ntBASIC0.02□□□□□ -2.41
MSH6P52701 Y_RNA.235-201ENST00000364412 102 ntBASIC0.02□□□□□ -2.41
MSH6P52701 Y_RNA.306-201ENST00000365015 102 ntBASIC0.02□□□□□ -2.41
MSH6P52701 Y_RNA.312-201ENST00000365089 102 ntBASIC0.02□□□□□ -2.41
MSH6P52701 Y_RNA.322-201ENST00000365151 102 ntBASIC0.02□□□□□ -2.41
MSH6P52701 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.02□□□□□ -2.41
MSH6P52701 MIR548P-201ENST00000408336 84 ntBASIC0.02□□□□□ -2.41
MSH6P52701 Y_RNA.650-201ENST00000459002 102 ntBASIC0.02□□□□□ -2.41
MSH6P52701 snoU13.11-201ENST00000459219 104 ntBASIC0.02□□□□□ -2.41
MSH6P52701 SNORA31.14-201ENST00000516728 116 ntBASIC0.02□□□□□ -2.41
MSH6P52701 Y_RNA.777-201ENST00000516982 102 ntBASIC0.02□□□□□ -2.41
MSH6P52701 RNU6-1137P-201ENST00000517073 99 ntBASIC0.02□□□□□ -2.41
MSH6P52701 Y_RNA.771-201ENST00000598668 102 ntBASIC0.02□□□□□ -2.41
MSH6P52701 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.02□□□□□ -2.41
MSH6P52701 Y_RNA.789-201ENST00000622480 102 ntBASIC0.02□□□□□ -2.41
MSH6P52701 MIR6841-201ENST00000637129 72 ntBASIC0.02□□□□□ -2.41
MSH6P52701 AL596211.1-201ENST00000569873 2277 ntBASIC0.02□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 241.3 ms