Protein–RNA interactions for Protein: P49642

PRIM1, DNA primase small subunit, humanhuman

Known RBP Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRIM1P49642 MIR3935-201ENST00000583472 104 ntBASIC3.27□□□□□ -1.89
PRIM1P49642 U7.4-201ENST00000614961 63 ntBASIC3.27□□□□□ -1.89
PRIM1P49642 MIR8066-201ENST00000617280 78 ntBASIC3.27□□□□□ -1.89
PRIM1P49642 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
PRIM1P49642 SNORA2B-201ENST00000384583 137 ntBASIC3.26□□□□□ -1.89
PRIM1P49642 SNORA9.3-201ENST00000516383 129 ntBASIC3.26□□□□□ -1.89
PRIM1P49642 AC105081.1-201ENST00000617727 106 ntBASIC3.26□□□□□ -1.89
PRIM1P49642 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.26□□□□□ -1.89
PRIM1P49642 RNU6-1094P-201ENST00000362416 104 ntBASIC3.25□□□□□ -1.89
PRIM1P49642 RNY1P2-201ENST00000364820 117 ntBASIC3.25□□□□□ -1.89
PRIM1P49642 RNU6-360P-201ENST00000390944 104 ntBASIC3.25□□□□□ -1.89
PRIM1P49642 RNU6-129P-201ENST00000391022 107 ntBASIC3.25□□□□□ -1.89
PRIM1P49642 AL359511.1-201ENST00000402970 211 ntBASIC3.25□□□□□ -1.89
PRIM1P49642 AL603825.1-201ENST00000438481 80 ntBASIC3.25□□□□□ -1.89
PRIM1P49642 AC011753.1-201ENST00000451001 220 ntBASIC3.25□□□□□ -1.89
PRIM1P49642 DEFB122-202ENST00000569013 197 ntBASIC3.25□□□□□ -1.89
PRIM1P49642 AC046143.2-201ENST00000609789 160 ntBASIC3.25□□□□□ -1.89
PRIM1P49642 AL512598.1-201ENST00000610158 273 ntBASIC3.25□□□□□ -1.89
PRIM1P49642 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
PRIM1P49642 RNU1-138P-201ENST00000384093 164 ntBASIC3.24□□□□□ -1.89
PRIM1P49642 HMGN2P39-201ENST00000398005 273 ntBASIC3.24□□□□□ -1.89
PRIM1P49642 RNA5SP492-201ENST00000411330 114 ntBASIC3.24□□□□□ -1.89
PRIM1P49642 AL356320.1-201ENST00000429616 163 ntBASIC3.24□□□□□ -1.89
PRIM1P49642 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC3.24□□□□□ -1.89
PRIM1P49642 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
PRIM1P49642 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
PRIM1P49642 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
PRIM1P49642 RNY1P13-201ENST00000365030 105 ntBASIC3.23□□□□□ -1.89
PRIM1P49642 AC108210.2-201ENST00000503681 201 ntBASIC3.23□□□□□ -1.89
PRIM1P49642 MIR4251-201ENST00000635819 61 ntBASIC3.23□□□□□ -1.89
PRIM1P49642 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
PRIM1P49642 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.23□□□□□ -1.89
PRIM1P49642 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC3.22□□□□□ -1.89
PRIM1P49642 RNA5SP133-201ENST00000363368 119 ntBASIC3.22□□□□□ -1.89
PRIM1P49642 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.22□□□□□ -1.89
PRIM1P49642 AC141846.1-201ENST00000568348 142 ntBASIC3.22□□□□□ -1.89
PRIM1P49642 MIR1273D-201ENST00000577266 86 ntBASIC3.22□□□□□ -1.89
PRIM1P49642 GS1-279B7.1-204ENST00000641809 378 ntBASIC3.22□□□□□ -1.89
PRIM1P49642 RNA5SP48-201ENST00000363969 126 ntBASIC3.21□□□□□ -1.9
PRIM1P49642 RNA5SP99-201ENST00000364020 114 ntBASIC3.21□□□□□ -1.9
PRIM1P49642 RNA5SP501-201ENST00000410990 112 ntBASIC3.21□□□□□ -1.9
PRIM1P49642 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
PRIM1P49642 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
PRIM1P49642 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PRIM1P49642 SNORD114-1-201ENST00000362705 72 ntBASIC3.19□□□□□ -1.9
PRIM1P49642 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC3.19□□□□□ -1.9
PRIM1P49642 AL662814.1-201ENST00000617364 121 ntBASIC3.19□□□□□ -1.9
PRIM1P49642 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
PRIM1P49642 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.19□□□□□ -1.9
PRIM1P49642 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
PRIM1P49642 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
PRIM1P49642 RNU6-949P-201ENST00000384040 107 ntBASIC3.18□□□□□ -1.9
PRIM1P49642 RNU6-482P-201ENST00000391068 107 ntBASIC3.18□□□□□ -1.9
PRIM1P49642 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
PRIM1P49642 SNORA25.13-201ENST00000516395 103 ntBASIC3.18□□□□□ -1.9
PRIM1P49642 MIR548AO-201ENST00000579992 96 ntBASIC3.18□□□□□ -1.9
PRIM1P49642 MIR3670-2-201ENST00000582974 65 ntBASIC3.18□□□□□ -1.9
PRIM1P49642 MIR3670-1-201ENST00000584160 65 ntBASIC3.18□□□□□ -1.9
PRIM1P49642 MIR3670-3-201ENST00000584855 65 ntBASIC3.18□□□□□ -1.9
PRIM1P49642 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC3.18□□□□□ -1.9
PRIM1P49642 MIR3670-4-201ENST00000612260 65 ntBASIC3.18□□□□□ -1.9
PRIM1P49642 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC3.18□□□□□ -1.9
PRIM1P49642 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.17□□□□□ -1.9
PRIM1P49642 RNU6-1229P-201ENST00000364295 107 ntBASIC3.17□□□□□ -1.9
PRIM1P49642 Y_RNA.565-201ENST00000384719 101 ntBASIC3.17□□□□□ -1.9
PRIM1P49642 RNU6-1237P-201ENST00000384777 107 ntBASIC3.17□□□□□ -1.9
PRIM1P49642 Y_RNA.660-201ENST00000516002 120 ntBASIC3.17□□□□□ -1.9
PRIM1P49642 RNU6-557P-201ENST00000516842 110 ntBASIC3.17□□□□□ -1.9
PRIM1P49642 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.17□□□□□ -1.9
PRIM1P49642 AGL-204ENST00000370161 6923 ntTSL 5 BASIC3.16□□□□□ -1.9
PRIM1P49642 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
PRIM1P49642 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
PRIM1P49642 SNORD56.5-201ENST00000364281 72 ntBASIC3.16□□□□□ -1.9
PRIM1P49642 RNU6-571P-201ENST00000384128 107 ntBASIC3.16□□□□□ -1.9
PRIM1P49642 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
PRIM1P49642 RNA5SP210-201ENST00000391034 120 ntBASIC3.16□□□□□ -1.9
PRIM1P49642 MIR889-201ENST00000401280 79 ntBASIC3.16□□□□□ -1.9
PRIM1P49642 AC027119.1-201ENST00000440877 241 ntBASIC3.16□□□□□ -1.9
PRIM1P49642 AC087499.7-201ENST00000441958 109 ntBASIC3.16□□□□□ -1.9
PRIM1P49642 SNORD4B-201ENST00000459083 72 ntBASIC3.16□□□□□ -1.9
PRIM1P49642 snoU13.11-201ENST00000459219 104 ntBASIC3.16□□□□□ -1.9
PRIM1P49642 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.16□□□□□ -1.9
PRIM1P49642 AL357312.1-201ENST00000603879 298 ntBASIC3.16□□□□□ -1.9
PRIM1P49642 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
PRIM1P49642 Y_RNA.57-201ENST00000362806 113 ntBASIC3.15□□□□□ -1.91
PRIM1P49642 RNU6-624P-201ENST00000363411 107 ntBASIC3.15□□□□□ -1.91
PRIM1P49642 MIR653-201ENST00000385279 96 ntBASIC3.15□□□□□ -1.91
PRIM1P49642 RNU6-917P-201ENST00000516294 104 ntBASIC3.15□□□□□ -1.91
PRIM1P49642 RNU6-548P-201ENST00000517083 115 ntBASIC3.15□□□□□ -1.91
PRIM1P49642 FAS-AS1.1-201ENST00000615327 126 ntBASIC3.15□□□□□ -1.91
PRIM1P49642 WWP1P1-201ENST00000466609 2769 ntBASIC3.15□□□□□ -1.91
PRIM1P49642 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
PRIM1P49642 RNA5SP456-201ENST00000364002 114 ntBASIC3.14□□□□□ -1.91
PRIM1P49642 5S_rRNA.2-201ENST00000391293 112 ntBASIC3.14□□□□□ -1.91
PRIM1P49642 RNA5SP270-201ENST00000411361 118 ntBASIC3.14□□□□□ -1.91
PRIM1P49642 UBBP3-201ENST00000445497 241 ntBASIC3.14□□□□□ -1.91
PRIM1P49642 SNRPGP12-201ENST00000449481 213 ntBASIC3.14□□□□□ -1.91
PRIM1P49642 Y_RNA.648-201ENST00000459455 110 ntBASIC3.14□□□□□ -1.91
PRIM1P49642 AC026436.1-201ENST00000510537 270 ntBASIC3.14□□□□□ -1.91
PRIM1P49642 SNORA25.9-201ENST00000365087 128 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 250.8 ms