Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC073415.1-201ENST00000449240 153 ntBASIC-2.17□□□□□ -2.76
CUX1P39880 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC-2.17□□□□□ -2.76
CUX1P39880 MIR4464-201ENST00000580818 92 ntBASIC-2.17□□□□□ -2.76
CUX1P39880 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC-2.17□□□□□ -2.76
CUX1P39880 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC-2.17□□□□□ -2.76
CUX1P39880 Y_RNA.5-201ENST00000362334 102 ntBASIC-2.18□□□□□ -2.76
CUX1P39880 RNU6-961P-201ENST00000363893 105 ntBASIC-2.18□□□□□ -2.76
CUX1P39880 Y_RNA.364-201ENST00000365532 101 ntBASIC-2.18□□□□□ -2.76
CUX1P39880 RNU6-157P-201ENST00000383957 107 ntBASIC-2.18□□□□□ -2.76
CUX1P39880 SNORD61-201ENST00000384252 73 ntBASIC-2.18□□□□□ -2.76
CUX1P39880 Y_RNA.601-201ENST00000410500 113 ntBASIC-2.18□□□□□ -2.76
CUX1P39880 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC-2.18□□□□□ -2.76
CUX1P39880 FGF7P6-202ENST00000451282 293 ntBASIC-2.18□□□□□ -2.76
CUX1P39880 RNU6-276P-201ENST00000516114 96 ntBASIC-2.18□□□□□ -2.76
CUX1P39880 ELOCP32-201ENST00000548625 324 ntBASIC-2.18□□□□□ -2.76
CUX1P39880 AC060780.3-201ENST00000589464 80 ntBASIC-2.18□□□□□ -2.76
CUX1P39880 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.18□□□□□ -2.76
CUX1P39880 AC092747.3-201ENST00000603769 301 ntBASIC-2.18□□□□□ -2.76
CUX1P39880 RNU6-208P-201ENST00000362431 107 ntBASIC-2.19□□□□□ -2.76
CUX1P39880 SNORA22.1-201ENST00000362701 134 ntBASIC-2.19□□□□□ -2.76
CUX1P39880 RNU6-337P-201ENST00000391243 106 ntBASIC-2.19□□□□□ -2.76
CUX1P39880 BX295541.1-201ENST00000417774 250 ntBASIC-2.19□□□□□ -2.76
CUX1P39880 AF228730.3-201ENST00000436691 102 ntBASIC-2.19□□□□□ -2.76
CUX1P39880 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC-2.19□□□□□ -2.76
CUX1P39880 AL049861.1-201ENST00000603130 150 ntBASIC-2.19□□□□□ -2.76
CUX1P39880 AC019193.3-201ENST00000609144 554 ntBASIC-2.19□□□□□ -2.76
CUX1P39880 MIR6841-201ENST00000637129 72 ntBASIC-2.19□□□□□ -2.76
CUX1P39880 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.19□□□□□ -2.76
CUX1P39880 RNU6-1120P-201ENST00000362988 108 ntBASIC-2.2□□□□□ -2.76
CUX1P39880 RNU6-181P-201ENST00000363225 107 ntBASIC-2.2□□□□□ -2.76
CUX1P39880 SNORD115-22-201ENST00000364456 82 ntBASIC-2.2□□□□□ -2.76
CUX1P39880 MIR582-201ENST00000365731 98 ntBASIC-2.2□□□□□ -2.76
CUX1P39880 MIR190B-201ENST00000401119 79 ntBASIC-2.2□□□□□ -2.76
CUX1P39880 AF228730.4-201ENST00000421457 183 ntBASIC-2.2□□□□□ -2.76
CUX1P39880 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-2.2□□□□□ -2.76
CUX1P39880 RNU6-168P-201ENST00000516189 101 ntBASIC-2.2□□□□□ -2.76
CUX1P39880 RNU6-751P-201ENST00000516382 101 ntBASIC-2.2□□□□□ -2.76
CUX1P39880 RNU6-445P-201ENST00000516949 107 ntBASIC-2.2□□□□□ -2.76
CUX1P39880 AP002963.1-201ENST00000530590 184 ntBASIC-2.2□□□□□ -2.76
CUX1P39880 AC098479.1-201ENST00000609225 154 ntBASIC-2.2□□□□□ -2.76
CUX1P39880 SNORD114-10-201ENST00000363409 72 ntBASIC-2.21□□□□□ -2.76
CUX1P39880 RNU6-553P-201ENST00000364047 96 ntBASIC-2.21□□□□□ -2.76
CUX1P39880 RNU4-10P-201ENST00000364383 140 ntBASIC-2.21□□□□□ -2.76
CUX1P39880 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.21□□□□□ -2.76
CUX1P39880 SNORD12B-201ENST00000410433 91 ntBASIC-2.21□□□□□ -2.76
CUX1P39880 SNORD63B-201ENST00000411005 70 ntBASIC-2.21□□□□□ -2.76
CUX1P39880 SNORA19.2-201ENST00000516013 114 ntBASIC-2.21□□□□□ -2.76
CUX1P39880 MIR6773-201ENST00000612812 74 ntBASIC-2.21□□□□□ -2.76
CUX1P39880 MIR6888-201ENST00000621977 67 ntBASIC-2.21□□□□□ -2.76
CUX1P39880 Y_RNA.71-201ENST00000362892 104 ntBASIC-2.22□□□□□ -2.76
CUX1P39880 RNA5SP405-201ENST00000363059 114 ntBASIC-2.22□□□□□ -2.76
CUX1P39880 Y_RNA.175-201ENST00000363794 111 ntBASIC-2.22□□□□□ -2.76
CUX1P39880 SNORD114-4-201ENST00000363962 75 ntBASIC-2.22□□□□□ -2.76
CUX1P39880 MIR517A-201ENST00000385001 87 ntBASIC-2.22□□□□□ -2.76
CUX1P39880 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC-2.22□□□□□ -2.76
CUX1P39880 RNU7-106P-201ENST00000459514 67 ntBASIC-2.22□□□□□ -2.76
CUX1P39880 Y_RNA.631-201ENST00000459607 101 ntBASIC-2.22□□□□□ -2.76
CUX1P39880 RNU6-596P-201ENST00000365395 98 ntBASIC-2.22□□□□□ -2.77
CUX1P39880 RNU6-996P-201ENST00000365438 107 ntBASIC-2.22□□□□□ -2.77
CUX1P39880 MIRLET7B-201ENST00000385140 83 ntBASIC-2.22□□□□□ -2.77
CUX1P39880 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-2.22□□□□□ -2.77
CUX1P39880 RNU6-365P-201ENST00000517113 106 ntBASIC-2.22□□□□□ -2.77
CUX1P39880 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC-2.22□□□□□ -2.77
CUX1P39880 RNU6-194P-201ENST00000363862 105 ntBASIC-2.23□□□□□ -2.77
CUX1P39880 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.23□□□□□ -2.77
CUX1P39880 Y_RNA.315-201ENST00000365117 102 ntBASIC-2.23□□□□□ -2.77
CUX1P39880 MIR548E-201ENST00000408287 88 ntBASIC-2.23□□□□□ -2.77
CUX1P39880 AL160004.2-201ENST00000432935 350 ntBASIC-2.23□□□□□ -2.77
CUX1P39880 RNU6-1038P-201ENST00000516516 104 ntBASIC-2.23□□□□□ -2.77
CUX1P39880 MTATP6P24-201ENST00000576835 677 ntBASIC-2.23□□□□□ -2.77
CUX1P39880 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC-2.23□□□□□ -2.77
CUX1P39880 AL669831.3-213ENST00000636676 183 ntBASIC-2.23□□□□□ -2.77
CUX1P39880 RNU6-888P-201ENST00000363010 101 ntBASIC-2.24□□□□□ -2.77
CUX1P39880 Y_RNA.378-201ENST00000365652 113 ntBASIC-2.24□□□□□ -2.77
CUX1P39880 RNU6-128P-201ENST00000383976 107 ntBASIC-2.24□□□□□ -2.77
CUX1P39880 SNORA51.5-201ENST00000384126 131 ntBASIC-2.24□□□□□ -2.77
CUX1P39880 Y_RNA.454-201ENST00000384224 113 ntBASIC-2.24□□□□□ -2.77
CUX1P39880 RNU6-155P-201ENST00000516347 100 ntBASIC-2.24□□□□□ -2.77
CUX1P39880 MIR4662B-201ENST00000579498 81 ntBASIC-2.24□□□□□ -2.77
CUX1P39880 AL359881.1-201ENST00000602916 267 ntBASIC-2.24□□□□□ -2.77
CUX1P39880 Y_RNA.162-201ENST00000363683 102 ntBASIC-2.25□□□□□ -2.77
CUX1P39880 MT-TM-201ENST00000387377 68 ntBASIC-2.25□□□□□ -2.77
CUX1P39880 SNORA53-201ENST00000391141 249 ntBASIC-2.25□□□□□ -2.77
CUX1P39880 RNU7-87P-201ENST00000459343 62 ntBASIC-2.25□□□□□ -2.77
CUX1P39880 AC024909.2-201ENST00000553035 286 ntBASIC-2.25□□□□□ -2.77
CUX1P39880 AC005014.3-201ENST00000605985 190 ntBASIC-2.25□□□□□ -2.77
CUX1P39880 AC021613.1-201ENST00000623880 111 ntBASIC-2.25□□□□□ -2.77
CUX1P39880 RNU6-626P-201ENST00000363354 107 ntBASIC-2.26□□□□□ -2.77
CUX1P39880 Y_RNA.182-201ENST00000363880 111 ntBASIC-2.26□□□□□ -2.77
CUX1P39880 MIR216B-201ENST00000390186 82 ntBASIC-2.26□□□□□ -2.77
CUX1P39880 MIR548H3-201ENST00000408771 118 ntBASIC-2.26□□□□□ -2.77
CUX1P39880 AC090616.4-201ENST00000448026 115 ntBASIC-2.26□□□□□ -2.77
CUX1P39880 SEPT14P4-201ENST00000513445 186 ntBASIC-2.26□□□□□ -2.77
CUX1P39880 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC-2.26□□□□□ -2.77
CUX1P39880 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC-2.26□□□□□ -2.77
CUX1P39880 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC-2.26□□□□□ -2.77
CUX1P39880 AC091932.4-201ENST00000623386 200 ntBASIC-2.26□□□□□ -2.77
CUX1P39880 RNU6-282P-201ENST00000365357 103 ntBASIC-2.27□□□□□ -2.77
CUX1P39880 Y_RNA.529-201ENST00000384586 119 ntBASIC-2.27□□□□□ -2.77
CUX1P39880 RNU6-400P-201ENST00000391173 106 ntBASIC-2.27□□□□□ -2.77
Retrieved 100 of 98,524 protein–RNA pairs in 210.5 ms