Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 RPS3AP1-201ENST00000413190 320 ntBASIC0.72□□□□□ -2.29
LIME1Q9H400 U7.7-201ENST00000459276 60 ntBASIC0.72□□□□□ -2.29
LIME1Q9H400 RNU6-958P-201ENST00000516995 106 ntBASIC0.72□□□□□ -2.29
LIME1Q9H400 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.72□□□□□ -2.29
LIME1Q9H400 AC009779.6-201ENST00000603972 165 ntBASIC0.72□□□□□ -2.29
LIME1Q9H400 FAM71BP1-201ENST00000604431 523 ntBASIC0.72□□□□□ -2.29
LIME1Q9H400 Y_RNA.75-201ENST00000362927 97 ntBASIC0.71□□□□□ -2.3
LIME1Q9H400 RNU6-923P-201ENST00000364753 107 ntBASIC0.71□□□□□ -2.3
LIME1Q9H400 SNORA20.1-201ENST00000364790 130 ntBASIC0.71□□□□□ -2.3
LIME1Q9H400 RNU6-918P-201ENST00000391219 106 ntBASIC0.71□□□□□ -2.3
LIME1Q9H400 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.71□□□□□ -2.3
LIME1Q9H400 AC244023.1-201ENST00000426884 112 ntBASIC0.71□□□□□ -2.3
LIME1Q9H400 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.71□□□□□ -2.3
LIME1Q9H400 AL121914.1-201ENST00000450188 156 ntBASIC0.71□□□□□ -2.3
LIME1Q9H400 AC133485.1-201ENST00000567176 124 ntBASIC0.71□□□□□ -2.3
LIME1Q9H400 AC138907.6-201ENST00000568401 126 ntBASIC0.71□□□□□ -2.3
LIME1Q9H400 MIR3129-201ENST00000581095 76 ntBASIC0.71□□□□□ -2.3
LIME1Q9H400 AP000753.3-201ENST00000604083 169 ntBASIC0.71□□□□□ -2.3
LIME1Q9H400 AC242498.1-201ENST00000604134 111 ntBASIC0.71□□□□□ -2.3
LIME1Q9H400 MIR411-201ENST00000362239 96 ntBASIC0.7□□□□□ -2.3
LIME1Q9H400 RNU6-1335P-201ENST00000365426 107 ntBASIC0.7□□□□□ -2.3
LIME1Q9H400 RNU6-643P-201ENST00000384018 107 ntBASIC0.7□□□□□ -2.3
LIME1Q9H400 SNORA26.6-201ENST00000391256 115 ntBASIC0.7□□□□□ -2.3
LIME1Q9H400 AC004941.2-201ENST00000427009 228 ntBASIC0.7□□□□□ -2.3
LIME1Q9H400 HMGN1P33-201ENST00000432945 451 ntBASIC0.7□□□□□ -2.3
LIME1Q9H400 RPL39P28-201ENST00000465655 155 ntBASIC0.7□□□□□ -2.3
LIME1Q9H400 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.7□□□□□ -2.3
LIME1Q9H400 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC0.7□□□□□ -2.3
LIME1Q9H400 MIR378D2-201ENST00000580636 98 ntBASIC0.7□□□□□ -2.3
LIME1Q9H400 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
LIME1Q9H400 SNORD114-23-201ENST00000363536 72 ntBASIC0.69□□□□□ -2.3
LIME1Q9H400 Y_RNA.178-201ENST00000363832 102 ntBASIC0.69□□□□□ -2.3
LIME1Q9H400 SNORD114-2-201ENST00000363953 78 ntBASIC0.69□□□□□ -2.3
LIME1Q9H400 Y_RNA.200-201ENST00000364018 102 ntBASIC0.69□□□□□ -2.3
LIME1Q9H400 Y_RNA.412-201ENST00000384001 104 ntBASIC0.69□□□□□ -2.3
LIME1Q9H400 MIR608-201ENST00000384820 100 ntBASIC0.69□□□□□ -2.3
LIME1Q9H400 MIR624-201ENST00000385217 97 ntBASIC0.69□□□□□ -2.3
LIME1Q9H400 RNU6-205P-201ENST00000390858 107 ntBASIC0.69□□□□□ -2.3
LIME1Q9H400 RNU6-994P-201ENST00000410507 111 ntBASIC0.69□□□□□ -2.3
LIME1Q9H400 RNU6-1190P-201ENST00000410811 104 ntBASIC0.69□□□□□ -2.3
LIME1Q9H400 RNU6-602P-201ENST00000411155 105 ntBASIC0.69□□□□□ -2.3
LIME1Q9H400 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.69□□□□□ -2.3
LIME1Q9H400 RNU2-11P-201ENST00000459191 187 ntBASIC0.69□□□□□ -2.3
LIME1Q9H400 Y_RNA.797-201ENST00000515977 94 ntBASIC0.69□□□□□ -2.3
LIME1Q9H400 RNU6-351P-201ENST00000516097 100 ntBASIC0.69□□□□□ -2.3
LIME1Q9H400 SNORD116-25-201ENST00000516517 92 ntBASIC0.69□□□□□ -2.3
LIME1Q9H400 RNA5SP330-201ENST00000517096 96 ntBASIC0.69□□□□□ -2.3
LIME1Q9H400 Z83818.1-201ENST00000603584 150 ntBASIC0.69□□□□□ -2.3
LIME1Q9H400 AL353765.1-201ENST00000605514 183 ntBASIC0.69□□□□□ -2.3
LIME1Q9H400 MIR6835-201ENST00000621552 64 ntBASIC0.69□□□□□ -2.3
LIME1Q9H400 RNA5SP457-201ENST00000363657 124 ntBASIC0.68□□□□□ -2.3
LIME1Q9H400 Y_RNA.182-201ENST00000363880 111 ntBASIC0.68□□□□□ -2.3
LIME1Q9H400 Y_RNA.258-201ENST00000364613 105 ntBASIC0.68□□□□□ -2.3
LIME1Q9H400 SNORA1.1-201ENST00000364671 133 ntBASIC0.68□□□□□ -2.3
LIME1Q9H400 RNU4-70P-201ENST00000384579 139 ntBASIC0.68□□□□□ -2.3
LIME1Q9H400 MIR508-201ENST00000384857 115 ntBASIC0.68□□□□□ -2.3
LIME1Q9H400 MT-TG-201ENST00000387429 68 ntBASIC0.68□□□□□ -2.3
LIME1Q9H400 Y_RNA.618-201ENST00000410949 107 ntBASIC0.68□□□□□ -2.3
LIME1Q9H400 RNU2-64P-201ENST00000411315 191 ntBASIC0.68□□□□□ -2.3
LIME1Q9H400 AC067940.1-201ENST00000458411 300 ntBASIC0.68□□□□□ -2.3
LIME1Q9H400 snoU13.21-201ENST00000459368 105 ntBASIC0.68□□□□□ -2.3
LIME1Q9H400 AC113410.1-201ENST00000505029 247 ntBASIC0.68□□□□□ -2.3
LIME1Q9H400 MRPS18CP4-201ENST00000535821 231 ntBASIC0.68□□□□□ -2.3
LIME1Q9H400 MIR6740-201ENST00000618268 113 ntBASIC0.68□□□□□ -2.3
LIME1Q9H400 AC091932.4-201ENST00000623386 200 ntBASIC0.68□□□□□ -2.3
LIME1Q9H400 Y_RNA.83-201ENST00000363005 113 ntBASIC0.67□□□□□ -2.3
LIME1Q9H400 SNORD38B-201ENST00000384690 67 ntBASIC0.67□□□□□ -2.3
LIME1Q9H400 MIR563-201ENST00000385080 79 ntBASIC0.67□□□□□ -2.3
LIME1Q9H400 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.67□□□□□ -2.3
LIME1Q9H400 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.67□□□□□ -2.3
LIME1Q9H400 RNA5SP193-201ENST00000410353 107 ntBASIC0.67□□□□□ -2.3
LIME1Q9H400 RNA5SP127-201ENST00000411051 133 ntBASIC0.67□□□□□ -2.3
LIME1Q9H400 AL138752.1-201ENST00000452964 351 ntBASIC0.67□□□□□ -2.3
LIME1Q9H400 RNU7-62P-201ENST00000458856 62 ntBASIC0.67□□□□□ -2.3
LIME1Q9H400 SCARNA15-202ENST00000516881 127 ntBASIC0.67□□□□□ -2.3
LIME1Q9H400 AC025627.3-201ENST00000582078 182 ntBASIC0.67□□□□□ -2.3
LIME1Q9H400 AC013244.2-201ENST00000603396 103 ntBASIC0.67□□□□□ -2.3
LIME1Q9H400 AL136317.1-201ENST00000612653 226 ntBASIC0.67□□□□□ -2.3
LIME1Q9H400 uc_338.6-201ENST00000613544 171 ntBASIC0.67□□□□□ -2.3
LIME1Q9H400 SNORD38B-202ENST00000625943 69 ntBASIC0.67□□□□□ -2.3
LIME1Q9H400 RNU6-597P-201ENST00000365620 102 ntBASIC0.66□□□□□ -2.3
LIME1Q9H400 Y_RNA.454-201ENST00000384224 113 ntBASIC0.66□□□□□ -2.3
LIME1Q9H400 Y_RNA.489-201ENST00000384410 101 ntBASIC0.66□□□□□ -2.3
LIME1Q9H400 MIR605-201ENST00000385078 83 ntBASIC0.66□□□□□ -2.3
LIME1Q9H400 MIR146A-201ENST00000385201 99 ntBASIC0.66□□□□□ -2.3
LIME1Q9H400 SNORD89-201ENST00000390981 114 ntBASIC0.66□□□□□ -2.3
LIME1Q9H400 AC006461.1-201ENST00000412637 326 ntBASIC0.66□□□□□ -2.3
LIME1Q9H400 RNU7-80P-201ENST00000459562 61 ntBASIC0.66□□□□□ -2.3
LIME1Q9H400 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.66□□□□□ -2.3
LIME1Q9H400 AC130289.1-201ENST00000577321 73 ntBASIC0.66□□□□□ -2.3
LIME1Q9H400 U6.106-201ENST00000636360 105 ntBASIC0.66□□□□□ -2.3
LIME1Q9H400 MIR6841-201ENST00000637129 72 ntBASIC0.66□□□□□ -2.3
LIME1Q9H400 Y_RNA.351-201ENST00000365436 96 ntBASIC0.65□□□□□ -2.31
LIME1Q9H400 RNU6-47P-201ENST00000383866 107 ntBASIC0.65□□□□□ -2.31
LIME1Q9H400 Y_RNA.430-201ENST00000384081 110 ntBASIC0.65□□□□□ -2.31
LIME1Q9H400 RPS26P5-201ENST00000418544 335 ntBASIC0.65□□□□□ -2.31
LIME1Q9H400 snoU13.2-201ENST00000459201 104 ntBASIC0.65□□□□□ -2.31
LIME1Q9H400 PSMC1P5-201ENST00000512850 177 ntBASIC0.65□□□□□ -2.31
LIME1Q9H400 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.65□□□□□ -2.31
LIME1Q9H400 MIR6717-201ENST00000622747 73 ntBASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 194.6 ms