Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 DNAJC19P9-201ENST00000555084 351 ntBASIC1.91□□□□□ -2.1
MSX2P35548 MIR5089-201ENST00000580047 84 ntBASIC1.91□□□□□ -2.1
MSX2P35548 FAM106DP-201ENST00000586416 501 ntBASIC1.91□□□□□ -2.1
MSX2P35548 Y_RNA.783-201ENST00000613546 102 ntBASIC1.91□□□□□ -2.1
MSX2P35548 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.91□□□□□ -2.1
MSX2P35548 RNU6-1131P-201ENST00000364955 107 ntBASIC1.9□□□□□ -2.11
MSX2P35548 Y_RNA.299-201ENST00000364973 94 ntBASIC1.9□□□□□ -2.11
MSX2P35548 Y_RNA.537-201ENST00000384626 109 ntBASIC1.9□□□□□ -2.11
MSX2P35548 RNU6-360P-201ENST00000390944 104 ntBASIC1.9□□□□□ -2.11
MSX2P35548 AL023284.1-201ENST00000403956 276 ntBASIC1.9□□□□□ -2.11
MSX2P35548 RNU6-893P-201ENST00000458841 100 ntBASIC1.9□□□□□ -2.11
MSX2P35548 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.9□□□□□ -2.11
MSX2P35548 MIR3152-201ENST00000579801 74 ntBASIC1.9□□□□□ -2.11
MSX2P35548 MIR4648-201ENST00000580107 72 ntBASIC1.9□□□□□ -2.11
MSX2P35548 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
MSX2P35548 RNU6-363P-201ENST00000362895 105 ntBASIC1.89□□□□□ -2.11
MSX2P35548 RNU6-203P-201ENST00000384038 104 ntBASIC1.89□□□□□ -2.11
MSX2P35548 MIR194-1-201ENST00000384892 85 ntBASIC1.89□□□□□ -2.11
MSX2P35548 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
MSX2P35548 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.89□□□□□ -2.11
MSX2P35548 MTATP8P2-201ENST00000435212 202 ntBASIC1.89□□□□□ -2.11
MSX2P35548 AL353813.1-201ENST00000440700 253 ntBASIC1.89□□□□□ -2.11
MSX2P35548 RNU6-917P-201ENST00000516294 104 ntBASIC1.89□□□□□ -2.11
MSX2P35548 MIR548AE2-201ENST00000583456 67 ntBASIC1.89□□□□□ -2.11
MSX2P35548 AC103810.8-201ENST00000607347 118 ntBASIC1.89□□□□□ -2.11
MSX2P35548 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.89□□□□□ -2.11
MSX2P35548 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
MSX2P35548 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
MSX2P35548 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
MSX2P35548 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
MSX2P35548 RNU6-1123P-201ENST00000362347 106 ntBASIC1.88□□□□□ -2.11
MSX2P35548 RNU6-1099P-201ENST00000363533 107 ntBASIC1.88□□□□□ -2.11
MSX2P35548 RNA5SP261-201ENST00000410536 106 ntBASIC1.88□□□□□ -2.11
MSX2P35548 HMGN2P19-201ENST00000425149 265 ntBASIC1.88□□□□□ -2.11
MSX2P35548 RNU6-970P-201ENST00000516312 107 ntBASIC1.88□□□□□ -2.11
MSX2P35548 RNU4-67P-201ENST00000364569 141 ntBASIC1.87□□□□□ -2.11
MSX2P35548 Y_RNA.466-201ENST00000384294 113 ntBASIC1.87□□□□□ -2.11
MSX2P35548 Y_RNA.507-201ENST00000384500 99 ntBASIC1.87□□□□□ -2.11
MSX2P35548 RN7SKP223-201ENST00000410582 62 ntBASIC1.87□□□□□ -2.11
MSX2P35548 HMGN1P33-201ENST00000432945 451 ntBASIC1.87□□□□□ -2.11
MSX2P35548 RNA5SP33-201ENST00000516687 98 ntBASIC1.87□□□□□ -2.11
MSX2P35548 DEFB131E-201ENST00000532329 154 ntBASIC1.87□□□□□ -2.11
MSX2P35548 MIR8055-201ENST00000610739 97 ntBASIC1.87□□□□□ -2.11
MSX2P35548 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
MSX2P35548 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.87□□□□□ -2.11
MSX2P35548 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.86□□□□□ -2.11
MSX2P35548 RNY3P2-201ENST00000362918 102 ntBASIC1.86□□□□□ -2.11
MSX2P35548 Y_RNA.93-201ENST00000363066 109 ntBASIC1.86□□□□□ -2.11
MSX2P35548 RNU6-294P-201ENST00000364999 102 ntBASIC1.86□□□□□ -2.11
MSX2P35548 Y_RNA.360-201ENST00000365512 102 ntBASIC1.86□□□□□ -2.11
MSX2P35548 RNU6-616P-201ENST00000384353 107 ntBASIC1.86□□□□□ -2.11
MSX2P35548 SNORA67.3-201ENST00000384366 140 ntBASIC1.86□□□□□ -2.11
MSX2P35548 MIR577-201ENST00000385196 96 ntBASIC1.86□□□□□ -2.11
MSX2P35548 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
MSX2P35548 AL161935.2-201ENST00000414627 60 ntBASIC1.86□□□□□ -2.11
MSX2P35548 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.86□□□□□ -2.11
MSX2P35548 snoU13.16-201ENST00000459350 104 ntBASIC1.86□□□□□ -2.11
MSX2P35548 MIR4694-201ENST00000578534 80 ntBASIC1.86□□□□□ -2.11
MSX2P35548 Y_RNA.107-201ENST00000363190 121 ntBASIC1.85□□□□□ -2.11
MSX2P35548 Y_RNA.155-201ENST00000363632 101 ntBASIC1.85□□□□□ -2.11
MSX2P35548 RNU4-36P-201ENST00000364294 144 ntBASIC1.85□□□□□ -2.11
MSX2P35548 SNORD73B-201ENST00000364394 72 ntBASIC1.85□□□□□ -2.11
MSX2P35548 MIR605-201ENST00000385078 83 ntBASIC1.85□□□□□ -2.11
MSX2P35548 MIR1289-2-201ENST00000408360 111 ntBASIC1.85□□□□□ -2.11
MSX2P35548 MIR1302-4-201ENST00000408701 150 ntBASIC1.85□□□□□ -2.11
MSX2P35548 RNU6-733P-201ENST00000410759 104 ntBASIC1.85□□□□□ -2.11
MSX2P35548 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.85□□□□□ -2.11
MSX2P35548 SCARNA23-201ENST00000516060 130 ntBASIC1.85□□□□□ -2.11
MSX2P35548 RNU7-43P-201ENST00000516554 64 ntBASIC1.85□□□□□ -2.11
MSX2P35548 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.85□□□□□ -2.11
MSX2P35548 AC008133.2-201ENST00000624540 351 ntBASIC1.85□□□□□ -2.11
MSX2P35548 RNU6-409P-201ENST00000384114 104 ntBASIC1.84□□□□□ -2.11
MSX2P35548 MIR653-201ENST00000385279 96 ntBASIC1.84□□□□□ -2.11
MSX2P35548 RNU6-679P-201ENST00000391003 106 ntBASIC1.84□□□□□ -2.11
MSX2P35548 Y_RNA.601-201ENST00000410500 113 ntBASIC1.84□□□□□ -2.11
MSX2P35548 AC004965.1-201ENST00000413033 213 ntBASIC1.84□□□□□ -2.11
MSX2P35548 AL356320.1-201ENST00000429616 163 ntBASIC1.84□□□□□ -2.11
MSX2P35548 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
MSX2P35548 MIR4764-201ENST00000580680 88 ntBASIC1.84□□□□□ -2.11
MSX2P35548 MALAT1.1-201ENST00000618249 95 ntBASIC1.84□□□□□ -2.11
MSX2P35548 MIR6873-201ENST00000622788 63 ntBASIC1.84□□□□□ -2.11
MSX2P35548 MIR2052-201ENST00000636055 55 ntBASIC1.84□□□□□ -2.11
MSX2P35548 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.12
MSX2P35548 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
MSX2P35548 RNU6-832P-201ENST00000363319 107 ntBASIC1.83□□□□□ -2.12
MSX2P35548 Y_RNA.342-201ENST00000365352 113 ntBASIC1.83□□□□□ -2.12
MSX2P35548 RNY1P7-201ENST00000384743 110 ntBASIC1.83□□□□□ -2.12
MSX2P35548 RNU6-1067P-201ENST00000384752 107 ntBASIC1.83□□□□□ -2.12
MSX2P35548 SNORD77B-201ENST00000391112 67 ntBASIC1.83□□□□□ -2.12
MSX2P35548 RPS3AP1-201ENST00000413190 320 ntBASIC1.83□□□□□ -2.12
MSX2P35548 AL591806.2-201ENST00000433122 173 ntBASIC1.83□□□□□ -2.12
MSX2P35548 AC015712.3-201ENST00000559380 164 ntBASIC1.83□□□□□ -2.12
MSX2P35548 MIR8065-201ENST00000620577 100 ntBASIC1.83□□□□□ -2.12
MSX2P35548 Z97988.1-201ENST00000637697 135 ntBASIC1.83□□□□□ -2.12
MSX2P35548 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.83□□□□□ -2.12
MSX2P35548 SNORA1.1-201ENST00000364671 133 ntBASIC1.82□□□□□ -2.12
MSX2P35548 SNORA32-201ENST00000384072 121 ntBASIC1.82□□□□□ -2.12
MSX2P35548 SNORA7.5-201ENST00000410672 110 ntBASIC1.82□□□□□ -2.12
MSX2P35548 snoU13.23-201ENST00000458863 104 ntBASIC1.82□□□□□ -2.12
MSX2P35548 AC108210.2-201ENST00000503681 201 ntBASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 221.8 ms