Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.9□□□□□ -2.27
HOXC11O43248 MIR5197-201ENST00000583721 112 ntBASIC0.9□□□□□ -2.27
HOXC11O43248 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
HOXC11O43248 RNY1-201ENST00000364228 113 ntBASIC0.89□□□□□ -2.27
HOXC11O43248 SNORD99-201ENST00000408612 74 ntBASIC0.89□□□□□ -2.27
HOXC11O43248 AC244023.1-201ENST00000426884 112 ntBASIC0.89□□□□□ -2.27
HOXC11O43248 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
HOXC11O43248 MIR4653-201ENST00000585107 83 ntBASIC0.89□□□□□ -2.27
HOXC11O43248 AL365205.2-201ENST00000594586 68 ntBASIC0.89□□□□□ -2.27
HOXC11O43248 AC242498.1-201ENST00000604134 111 ntBASIC0.89□□□□□ -2.27
HOXC11O43248 FAM71BP1-201ENST00000604431 523 ntBASIC0.89□□□□□ -2.27
HOXC11O43248 RNU6-1335P-201ENST00000365426 107 ntBASIC0.88□□□□□ -2.27
HOXC11O43248 SNORD105-201ENST00000386910 85 ntBASIC0.88□□□□□ -2.27
HOXC11O43248 RPS26P5-201ENST00000418544 335 ntBASIC0.88□□□□□ -2.27
HOXC11O43248 SEPT7P4-201ENST00000437076 306 ntBASIC0.88□□□□□ -2.27
HOXC11O43248 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.88□□□□□ -2.27
HOXC11O43248 RNU6-111P-201ENST00000517179 105 ntBASIC0.88□□□□□ -2.27
HOXC11O43248 MIR4698-201ENST00000577795 80 ntBASIC0.88□□□□□ -2.27
HOXC11O43248 Y_RNA.489-201ENST00000384410 101 ntBASIC0.87□□□□□ -2.27
HOXC11O43248 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.87□□□□□ -2.27
HOXC11O43248 RNU6-602P-201ENST00000411155 105 ntBASIC0.87□□□□□ -2.27
HOXC11O43248 SNORD83.1-201ENST00000411362 77 ntBASIC0.87□□□□□ -2.27
HOXC11O43248 RNU6-977P-201ENST00000516411 103 ntBASIC0.87□□□□□ -2.27
HOXC11O43248 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC0.87□□□□□ -2.27
HOXC11O43248 AC104465.1-201ENST00000611365 139 ntBASIC0.87□□□□□ -2.27
HOXC11O43248 RNU6-643P-201ENST00000384018 107 ntBASIC0.86□□□□□ -2.27
HOXC11O43248 MIR588-201ENST00000384900 83 ntBASIC0.86□□□□□ -2.27
HOXC11O43248 MIR605-201ENST00000385078 83 ntBASIC0.86□□□□□ -2.27
HOXC11O43248 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.86□□□□□ -2.27
HOXC11O43248 AC004941.2-201ENST00000427009 228 ntBASIC0.86□□□□□ -2.27
HOXC11O43248 MIR5000-201ENST00000577717 103 ntBASIC0.86□□□□□ -2.27
HOXC11O43248 MIR4771-2-201ENST00000577758 74 ntBASIC0.86□□□□□ -2.27
HOXC11O43248 MIR3152-201ENST00000579801 74 ntBASIC0.86□□□□□ -2.27
HOXC11O43248 MIR4308-201ENST00000580634 81 ntBASIC0.86□□□□□ -2.27
HOXC11O43248 MIR4771-1-201ENST00000582617 74 ntBASIC0.86□□□□□ -2.27
HOXC11O43248 MIR6515-201ENST00000619843 57 ntBASIC0.86□□□□□ -2.27
HOXC11O43248 AL596211.1-201ENST00000569873 2277 ntBASIC0.85□□□□□ -2.27
HOXC11O43248 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
HOXC11O43248 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.85□□□□□ -2.27
HOXC11O43248 snoU13.21-201ENST00000459368 105 ntBASIC0.85□□□□□ -2.27
HOXC11O43248 Y_RNA.200-201ENST00000364018 102 ntBASIC0.84□□□□□ -2.27
HOXC11O43248 RNU6-275P-201ENST00000364910 107 ntBASIC0.84□□□□□ -2.27
HOXC11O43248 RNU6-110P-201ENST00000384508 104 ntBASIC0.84□□□□□ -2.27
HOXC11O43248 Y_RNA.540-201ENST00000384638 111 ntBASIC0.84□□□□□ -2.27
HOXC11O43248 SNORA20-201ENST00000384662 132 ntBASIC0.84□□□□□ -2.27
HOXC11O43248 MIR146A-201ENST00000385201 99 ntBASIC0.84□□□□□ -2.27
HOXC11O43248 snosnR66.1-201ENST00000391095 99 ntBASIC0.84□□□□□ -2.27
HOXC11O43248 RNU6-1190P-201ENST00000410811 104 ntBASIC0.84□□□□□ -2.27
HOXC11O43248 RNA5SP127-201ENST00000411051 133 ntBASIC0.84□□□□□ -2.27
HOXC11O43248 MIR18B-201ENST00000454574 71 ntBASIC0.84□□□□□ -2.27
HOXC11O43248 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.84□□□□□ -2.27
HOXC11O43248 Z83818.1-201ENST00000603584 150 ntBASIC0.84□□□□□ -2.27
HOXC11O43248 MIR6717-201ENST00000622747 73 ntBASIC0.84□□□□□ -2.27
HOXC11O43248 Y_RNA.83-201ENST00000363005 113 ntBASIC0.83□□□□□ -2.28
HOXC11O43248 RNU6-978P-201ENST00000364371 103 ntBASIC0.83□□□□□ -2.28
HOXC11O43248 SNORA25.7-201ENST00000364375 127 ntBASIC0.83□□□□□ -2.28
HOXC11O43248 MIR520F-201ENST00000384824 87 ntBASIC0.83□□□□□ -2.28
HOXC11O43248 RNU6-1165P-201ENST00000410119 107 ntBASIC0.83□□□□□ -2.28
HOXC11O43248 snoU13.2-201ENST00000459201 104 ntBASIC0.83□□□□□ -2.28
HOXC11O43248 AC011195.1-201ENST00000578177 177 ntBASIC0.83□□□□□ -2.28
HOXC11O43248 AC091932.4-201ENST00000623386 200 ntBASIC0.83□□□□□ -2.28
HOXC11O43248 MIR376A2-201ENST00000636782 80 ntBASIC0.83□□□□□ -2.28
HOXC11O43248 AC023934.1-201ENST00000574529 2389 ntBASIC0.83□□□□□ -2.28
HOXC11O43248 AC010332.2-201ENST00000613083 1904 ntBASIC0.82□□□□□ -2.28
HOXC11O43248 SNORD114-2-201ENST00000363953 78 ntBASIC0.82□□□□□ -2.28
HOXC11O43248 RNU1-133P-201ENST00000364867 167 ntBASIC0.82□□□□□ -2.28
HOXC11O43248 Y_RNA.401-201ENST00000383965 117 ntBASIC0.82□□□□□ -2.28
HOXC11O43248 Y_RNA.521-201ENST00000384560 114 ntBASIC0.82□□□□□ -2.28
HOXC11O43248 RNU1-119P-201ENST00000391122 165 ntBASIC0.82□□□□□ -2.28
HOXC11O43248 AC006461.1-201ENST00000412637 326 ntBASIC0.82□□□□□ -2.28
HOXC11O43248 RNU6-351P-201ENST00000516097 100 ntBASIC0.82□□□□□ -2.28
HOXC11O43248 MIR6740-201ENST00000618268 113 ntBASIC0.82□□□□□ -2.28
HOXC11O43248 HSBP1P2-201ENST00000299671 229 ntBASIC0.81□□□□□ -2.28
HOXC11O43248 MIR411-201ENST00000362239 96 ntBASIC0.81□□□□□ -2.28
HOXC11O43248 Y_RNA.75-201ENST00000362927 97 ntBASIC0.81□□□□□ -2.28
HOXC11O43248 AL606490.4-201ENST00000423117 127 ntBASIC0.81□□□□□ -2.28
HOXC11O43248 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.81□□□□□ -2.28
HOXC11O43248 RNU7-45P-201ENST00000459460 63 ntBASIC0.81□□□□□ -2.28
HOXC11O43248 PVT1_3.1-201ENST00000620853 95 ntBASIC0.81□□□□□ -2.28
HOXC11O43248 RNU6-1020P-201ENST00000363684 107 ntBASIC0.8□□□□□ -2.28
HOXC11O43248 Y_RNA.435-201ENST00000384095 112 ntBASIC0.8□□□□□ -2.28
HOXC11O43248 MIR624-201ENST00000385217 97 ntBASIC0.8□□□□□ -2.28
HOXC11O43248 SNORD12C-201ENST00000386307 89 ntBASIC0.8□□□□□ -2.28
HOXC11O43248 RNU6-1319P-201ENST00000390855 104 ntBASIC0.8□□□□□ -2.28
HOXC11O43248 RNU6-747P-201ENST00000390928 104 ntBASIC0.8□□□□□ -2.28
HOXC11O43248 RNU6-241P-201ENST00000391148 104 ntBASIC0.8□□□□□ -2.28
HOXC11O43248 RNU6-177P-201ENST00000411257 104 ntBASIC0.8□□□□□ -2.28
HOXC11O43248 MIR4676-201ENST00000583078 72 ntBASIC0.8□□□□□ -2.28
HOXC11O43248 U6.106-201ENST00000636360 105 ntBASIC0.8□□□□□ -2.28
HOXC11O43248 Y_RNA.188-201ENST00000363952 111 ntBASIC0.79□□□□□ -2.28
HOXC11O43248 Y_RNA.412-201ENST00000384001 104 ntBASIC0.79□□□□□ -2.28
HOXC11O43248 MIR598-201ENST00000384868 97 ntBASIC0.79□□□□□ -2.28
HOXC11O43248 MIR520H-201ENST00000385126 88 ntBASIC0.79□□□□□ -2.28
HOXC11O43248 RNU6-918P-201ENST00000391219 106 ntBASIC0.79□□□□□ -2.28
HOXC11O43248 MIR1257-201ENST00000408490 117 ntBASIC0.79□□□□□ -2.28
HOXC11O43248 RNA5SP237-201ENST00000410414 113 ntBASIC0.79□□□□□ -2.28
HOXC11O43248 AC015818.7-201ENST00000428754 109 ntBASIC0.79□□□□□ -2.28
HOXC11O43248 AC087499.7-201ENST00000441958 109 ntBASIC0.79□□□□□ -2.28
HOXC11O43248 RPL39P25-201ENST00000449384 154 ntBASIC0.79□□□□□ -2.28
HOXC11O43248 MRPS18CP4-201ENST00000535821 231 ntBASIC0.79□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 224 ms