Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 SNORD27-201ENST00000363981 72 ntBASIC0.79□□□□□ -2.28
LIME1Q9H400 Y_RNA.330-201ENST00000365230 109 ntBASIC0.79□□□□□ -2.28
LIME1Q9H400 RNU6-196P-201ENST00000384315 107 ntBASIC0.79□□□□□ -2.28
LIME1Q9H400 Y_RNA.622-201ENST00000411091 108 ntBASIC0.79□□□□□ -2.28
LIME1Q9H400 UBL5P1-201ENST00000507979 193 ntBASIC0.79□□□□□ -2.28
LIME1Q9H400 RNU4-71P-201ENST00000516258 113 ntBASIC0.79□□□□□ -2.28
LIME1Q9H400 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
LIME1Q9H400 AL162730.1-201ENST00000605734 292 ntBASIC0.79□□□□□ -2.28
LIME1Q9H400 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.78□□□□□ -2.28
LIME1Q9H400 Y_RNA.60-201ENST00000362831 98 ntBASIC0.78□□□□□ -2.28
LIME1Q9H400 Y_RNA.168-201ENST00000363740 102 ntBASIC0.78□□□□□ -2.28
LIME1Q9H400 Y_RNA.410-201ENST00000383992 113 ntBASIC0.78□□□□□ -2.28
LIME1Q9H400 SNORA27-201ENST00000384323 126 ntBASIC0.78□□□□□ -2.28
LIME1Q9H400 MIR193B-201ENST00000384907 83 ntBASIC0.78□□□□□ -2.28
LIME1Q9H400 AF228730.3-201ENST00000436691 102 ntBASIC0.78□□□□□ -2.28
LIME1Q9H400 AC107297.1-201ENST00000459991 176 ntBASIC0.78□□□□□ -2.28
LIME1Q9H400 RPS29P24-201ENST00000486345 171 ntBASIC0.78□□□□□ -2.28
LIME1Q9H400 PDCD5P2-201ENST00000507570 312 ntBASIC0.78□□□□□ -2.28
LIME1Q9H400 RNU6-561P-201ENST00000516222 102 ntBASIC0.78□□□□□ -2.28
LIME1Q9H400 RNA5SP255-201ENST00000516370 107 ntBASIC0.78□□□□□ -2.28
LIME1Q9H400 MIR3128-201ENST00000581957 66 ntBASIC0.78□□□□□ -2.28
LIME1Q9H400 MIR4661-201ENST00000582720 75 ntBASIC0.78□□□□□ -2.28
LIME1Q9H400 AL365205.2-201ENST00000594586 68 ntBASIC0.78□□□□□ -2.28
LIME1Q9H400 7SK.10-201ENST00000621414 298 ntBASIC0.78□□□□□ -2.28
LIME1Q9H400 Y_RNA.144-201ENST00000363521 113 ntBASIC0.77□□□□□ -2.29
LIME1Q9H400 SNORD113.3-201ENST00000364630 78 ntBASIC0.77□□□□□ -2.29
LIME1Q9H400 RNU6-580P-201ENST00000365159 107 ntBASIC0.77□□□□□ -2.29
LIME1Q9H400 RNU6-396P-201ENST00000365369 105 ntBASIC0.77□□□□□ -2.29
LIME1Q9H400 RNU6-728P-201ENST00000365375 104 ntBASIC0.77□□□□□ -2.29
LIME1Q9H400 Y_RNA.440-201ENST00000384120 114 ntBASIC0.77□□□□□ -2.29
LIME1Q9H400 Y_RNA.447-201ENST00000384184 113 ntBASIC0.77□□□□□ -2.29
LIME1Q9H400 RNU6-463P-201ENST00000384340 107 ntBASIC0.77□□□□□ -2.29
LIME1Q9H400 RNU6-125P-201ENST00000384505 107 ntBASIC0.77□□□□□ -2.29
LIME1Q9H400 Y_RNA.542-201ENST00000384641 111 ntBASIC0.77□□□□□ -2.29
LIME1Q9H400 Y_RNA.626-201ENST00000411288 95 ntBASIC0.77□□□□□ -2.29
LIME1Q9H400 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.77□□□□□ -2.29
LIME1Q9H400 AC023827.1-201ENST00000569247 97 ntBASIC0.77□□□□□ -2.29
LIME1Q9H400 MIR4744-201ENST00000581563 82 ntBASIC0.77□□□□□ -2.29
LIME1Q9H400 MIR3149-201ENST00000584629 83 ntBASIC0.77□□□□□ -2.29
LIME1Q9H400 AC108706.1-201ENST00000611053 297 ntBASIC0.77□□□□□ -2.29
LIME1Q9H400 Z97988.1-201ENST00000637697 135 ntBASIC0.77□□□□□ -2.29
LIME1Q9H400 Y_RNA.7-201ENST00000362352 102 ntBASIC0.76□□□□□ -2.29
LIME1Q9H400 Y_RNA.199-201ENST00000364014 102 ntBASIC0.76□□□□□ -2.29
LIME1Q9H400 Y_RNA.307-201ENST00000365022 117 ntBASIC0.76□□□□□ -2.29
LIME1Q9H400 SNORA1-201ENST00000384107 130 ntBASIC0.76□□□□□ -2.29
LIME1Q9H400 Y_RNA.477-201ENST00000384352 108 ntBASIC0.76□□□□□ -2.29
LIME1Q9H400 RNU6-913P-201ENST00000390913 95 ntBASIC0.76□□□□□ -2.29
LIME1Q9H400 SNORD111-201ENST00000408139 94 ntBASIC0.76□□□□□ -2.29
LIME1Q9H400 AC090844.1-201ENST00000422019 156 ntBASIC0.76□□□□□ -2.29
LIME1Q9H400 FABP5P4-201ENST00000437203 171 ntBASIC0.76□□□□□ -2.29
LIME1Q9H400 RNU7-96P-201ENST00000459535 64 ntBASIC0.76□□□□□ -2.29
LIME1Q9H400 RNU6-998P-201ENST00000515894 101 ntBASIC0.76□□□□□ -2.29
LIME1Q9H400 RNU7-53P-201ENST00000516705 60 ntBASIC0.76□□□□□ -2.29
LIME1Q9H400 AC004817.2-201ENST00000561794 651 ntBASIC0.76□□□□□ -2.29
LIME1Q9H400 MIR1273G-201ENST00000577677 100 ntBASIC0.76□□□□□ -2.29
LIME1Q9H400 MIR4308-201ENST00000580634 81 ntBASIC0.76□□□□□ -2.29
LIME1Q9H400 MIR4264-201ENST00000583520 66 ntBASIC0.76□□□□□ -2.29
LIME1Q9H400 MIR376A2-201ENST00000636782 80 ntBASIC0.76□□□□□ -2.29
LIME1Q9H400 RNU1-36P-201ENST00000365130 165 ntBASIC0.75□□□□□ -2.29
LIME1Q9H400 RNU6-1189P-201ENST00000383958 107 ntBASIC0.75□□□□□ -2.29
LIME1Q9H400 Y_RNA.435-201ENST00000384095 112 ntBASIC0.75□□□□□ -2.29
LIME1Q9H400 RNU6-578P-201ENST00000390980 103 ntBASIC0.75□□□□□ -2.29
LIME1Q9H400 SNORD77.3-201ENST00000391113 65 ntBASIC0.75□□□□□ -2.29
LIME1Q9H400 MIR942-201ENST00000401111 86 ntBASIC0.75□□□□□ -2.29
LIME1Q9H400 RNA5SP95-201ENST00000410319 137 ntBASIC0.75□□□□□ -2.29
LIME1Q9H400 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.75□□□□□ -2.29
LIME1Q9H400 RNY3P16-201ENST00000516338 101 ntBASIC0.75□□□□□ -2.29
LIME1Q9H400 MIR5197-201ENST00000583721 112 ntBASIC0.75□□□□□ -2.29
LIME1Q9H400 RNU6-94P-201ENST00000607728 107 ntBASIC0.75□□□□□ -2.29
LIME1Q9H400 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
LIME1Q9H400 RNU6-978P-201ENST00000364371 103 ntBASIC0.74□□□□□ -2.29
LIME1Q9H400 RNU6-1187P-201ENST00000364771 110 ntBASIC0.74□□□□□ -2.29
LIME1Q9H400 Y_RNA.308-201ENST00000365043 101 ntBASIC0.74□□□□□ -2.29
LIME1Q9H400 RNU6-1292P-201ENST00000383856 107 ntBASIC0.74□□□□□ -2.29
LIME1Q9H400 RNU6-574P-201ENST00000384265 107 ntBASIC0.74□□□□□ -2.29
LIME1Q9H400 Y_RNA.571-201ENST00000384753 98 ntBASIC0.74□□□□□ -2.29
LIME1Q9H400 RNU6-493P-201ENST00000391321 108 ntBASIC0.74□□□□□ -2.29
LIME1Q9H400 RNU6-111P-201ENST00000517179 105 ntBASIC0.74□□□□□ -2.29
LIME1Q9H400 MIR8055-201ENST00000610739 97 ntBASIC0.74□□□□□ -2.29
LIME1Q9H400 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.73□□□□□ -2.29
LIME1Q9H400 Y_RNA.65-201ENST00000362846 100 ntBASIC0.73□□□□□ -2.29
LIME1Q9H400 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.73□□□□□ -2.29
LIME1Q9H400 SNORA79-201ENST00000408376 140 ntBASIC0.73□□□□□ -2.29
LIME1Q9H400 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.73□□□□□ -2.29
LIME1Q9H400 AL035398.1-201ENST00000430869 322 ntBASIC0.73□□□□□ -2.29
LIME1Q9H400 RNU7-67P-201ENST00000459003 62 ntBASIC0.73□□□□□ -2.29
LIME1Q9H400 ACA64.5-201ENST00000516207 127 ntBASIC0.73□□□□□ -2.29
LIME1Q9H400 RNU6-1110P-201ENST00000516462 101 ntBASIC0.73□□□□□ -2.29
LIME1Q9H400 AL590095.2-201ENST00000604136 117 ntBASIC0.73□□□□□ -2.29
LIME1Q9H400 RNU2-4P-201ENST00000606190 192 ntBASIC0.73□□□□□ -2.29
LIME1Q9H400 MIR6513-201ENST00000621188 64 ntBASIC0.73□□□□□ -2.29
LIME1Q9H400 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.72□□□□□ -2.29
LIME1Q9H400 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
LIME1Q9H400 RNU6-369P-201ENST00000362515 102 ntBASIC0.72□□□□□ -2.29
LIME1Q9H400 Y_RNA.115-201ENST00000363272 98 ntBASIC0.72□□□□□ -2.29
LIME1Q9H400 RNU6-275P-201ENST00000364910 107 ntBASIC0.72□□□□□ -2.29
LIME1Q9H400 SNORA2B-201ENST00000384583 137 ntBASIC0.72□□□□□ -2.29
LIME1Q9H400 MIR936-201ENST00000401264 98 ntBASIC0.72□□□□□ -2.29
LIME1Q9H400 MIR548I3-201ENST00000408378 149 ntBASIC0.72□□□□□ -2.29
LIME1Q9H400 MIR1827-201ENST00000408549 66 ntBASIC0.72□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 273 ms