Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 RNU6-1054P-201ENST00000411293 104 ntBASIC1.53□□□□□ -2.16
NUP88Q99567 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.53□□□□□ -2.16
NUP88Q99567 SNORA70.22-201ENST00000517160 124 ntBASIC1.53□□□□□ -2.16
NUP88Q99567 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.53□□□□□ -2.16
NUP88Q99567 AC019288.1-201ENST00000557918 224 ntBASIC1.53□□□□□ -2.16
NUP88Q99567 DNAJC19P2-201ENST00000593340 302 ntBASIC1.53□□□□□ -2.16
NUP88Q99567 AC091895.1-201ENST00000624494 256 ntBASIC1.53□□□□□ -2.16
NUP88Q99567 RNA5SP327-201ENST00000362494 101 ntBASIC1.52□□□□□ -2.17
NUP88Q99567 RNA5SP264-201ENST00000363115 107 ntBASIC1.52□□□□□ -2.17
NUP88Q99567 Y_RNA.330-201ENST00000365230 109 ntBASIC1.52□□□□□ -2.17
NUP88Q99567 Y_RNA.441-201ENST00000384123 112 ntBASIC1.52□□□□□ -2.17
NUP88Q99567 MIR489-201ENST00000384923 84 ntBASIC1.52□□□□□ -2.17
NUP88Q99567 MIR1276-201ENST00000408707 83 ntBASIC1.52□□□□□ -2.17
NUP88Q99567 RPS29P23-201ENST00000458635 123 ntBASIC1.52□□□□□ -2.17
NUP88Q99567 RNU2-11P-201ENST00000459191 187 ntBASIC1.52□□□□□ -2.17
NUP88Q99567 RNU7-80P-201ENST00000459562 61 ntBASIC1.52□□□□□ -2.17
NUP88Q99567 MIR3660-201ENST00000584845 100 ntBASIC1.52□□□□□ -2.17
NUP88Q99567 MIR3658-201ENST00000636291 56 ntBASIC1.52□□□□□ -2.17
NUP88Q99567 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
NUP88Q99567 AL596211.1-201ENST00000569873 2277 ntBASIC1.51□□□□□ -2.17
NUP88Q99567 MIR26B-201ENST00000362251 77 ntBASIC1.51□□□□□ -2.17
NUP88Q99567 RNU6-449P-201ENST00000383914 107 ntBASIC1.51□□□□□ -2.17
NUP88Q99567 SNORD116-18-201ENST00000383961 92 ntBASIC1.51□□□□□ -2.17
NUP88Q99567 Y_RNA.454-201ENST00000384224 113 ntBASIC1.51□□□□□ -2.17
NUP88Q99567 RNU6-907P-201ENST00000390924 102 ntBASIC1.51□□□□□ -2.17
NUP88Q99567 SNORA40.6-201ENST00000391153 128 ntBASIC1.51□□□□□ -2.17
NUP88Q99567 RNU6-1135P-201ENST00000411083 103 ntBASIC1.51□□□□□ -2.17
NUP88Q99567 snoU13.16-201ENST00000459350 104 ntBASIC1.51□□□□□ -2.17
NUP88Q99567 RNU6-998P-201ENST00000515894 101 ntBASIC1.51□□□□□ -2.17
NUP88Q99567 RNU2-13P-201ENST00000515909 113 ntBASIC1.51□□□□□ -2.17
NUP88Q99567 MIR548AO-201ENST00000579992 96 ntBASIC1.51□□□□□ -2.17
NUP88Q99567 MIR376A2-201ENST00000636782 80 ntBASIC1.51□□□□□ -2.17
NUP88Q99567 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
NUP88Q99567 RNU6-1082P-201ENST00000364574 107 ntBASIC1.5□□□□□ -2.17
NUP88Q99567 SNORA25.8-201ENST00000364831 128 ntBASIC1.5□□□□□ -2.17
NUP88Q99567 RNU6-588P-201ENST00000410281 105 ntBASIC1.5□□□□□ -2.17
NUP88Q99567 snoU13.25-201ENST00000458945 104 ntBASIC1.5□□□□□ -2.17
NUP88Q99567 RNU6-1149P-201ENST00000516810 97 ntBASIC1.5□□□□□ -2.17
NUP88Q99567 RNU6-151P-201ENST00000364158 107 ntBASIC1.49□□□□□ -2.17
NUP88Q99567 RNU1-133P-201ENST00000364867 167 ntBASIC1.49□□□□□ -2.17
NUP88Q99567 SNORD26-201ENST00000384147 75 ntBASIC1.49□□□□□ -2.17
NUP88Q99567 Y_RNA.555-201ENST00000384673 110 ntBASIC1.49□□□□□ -2.17
NUP88Q99567 MIR548I3-201ENST00000408378 149 ntBASIC1.49□□□□□ -2.17
NUP88Q99567 snoU13.18-201ENST00000459483 104 ntBASIC1.49□□□□□ -2.17
NUP88Q99567 MIR3646-201ENST00000578301 84 ntBASIC1.49□□□□□ -2.17
NUP88Q99567 AL022345.2-201ENST00000606307 135 ntBASIC1.49□□□□□ -2.17
NUP88Q99567 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
NUP88Q99567 RNU4-11P-201ENST00000365287 132 ntBASIC1.48□□□□□ -2.17
NUP88Q99567 SNORA24-201ENST00000384096 131 ntBASIC1.48□□□□□ -2.17
NUP88Q99567 RNU6-804P-201ENST00000384286 107 ntBASIC1.48□□□□□ -2.17
NUP88Q99567 SNORA25-201ENST00000384384 134 ntBASIC1.48□□□□□ -2.17
NUP88Q99567 MIR758-201ENST00000390227 88 ntBASIC1.48□□□□□ -2.17
NUP88Q99567 AL591704.2-201ENST00000421658 181 ntBASIC1.48□□□□□ -2.17
NUP88Q99567 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.48□□□□□ -2.17
NUP88Q99567 RNU7-40P-201ENST00000516397 64 ntBASIC1.48□□□□□ -2.17
NUP88Q99567 RNU7-121P-201ENST00000516604 62 ntBASIC1.48□□□□□ -2.17
NUP88Q99567 RNA5SP102-201ENST00000516865 106 ntBASIC1.48□□□□□ -2.17
NUP88Q99567 AC068338.1-201ENST00000565567 176 ntBASIC1.48□□□□□ -2.17
NUP88Q99567 MIR6078-201ENST00000611069 100 ntBASIC1.48□□□□□ -2.17
NUP88Q99567 Y_RNA.466-201ENST00000384294 113 ntBASIC1.47□□□□□ -2.17
NUP88Q99567 SNORA80D-201ENST00000384488 135 ntBASIC1.47□□□□□ -2.17
NUP88Q99567 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.47□□□□□ -2.17
NUP88Q99567 MIR6504-201ENST00000613520 61 ntBASIC1.47□□□□□ -2.17
NUP88Q99567 MTND5P32-201ENST00000560711 1802 ntBASIC1.47□□□□□ -2.17
NUP88Q99567 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
NUP88Q99567 SNORA1.1-201ENST00000364671 133 ntBASIC1.46□□□□□ -2.18
NUP88Q99567 RNU6-396P-201ENST00000365369 105 ntBASIC1.46□□□□□ -2.18
NUP88Q99567 RNU6-1130P-201ENST00000365434 107 ntBASIC1.46□□□□□ -2.18
NUP88Q99567 RNU6-209P-201ENST00000384118 107 ntBASIC1.46□□□□□ -2.18
NUP88Q99567 PCNPP3-201ENST00000393579 471 ntBASIC1.46□□□□□ -2.18
NUP88Q99567 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.46□□□□□ -2.18
NUP88Q99567 MIR1185-1-201ENST00000408598 86 ntBASIC1.46□□□□□ -2.18
NUP88Q99567 MRPL35P3-201ENST00000421557 364 ntBASIC1.46□□□□□ -2.18
NUP88Q99567 RNU7-73P-201ENST00000458743 63 ntBASIC1.46□□□□□ -2.18
NUP88Q99567 AC112693.2-201ENST00000556538 232 ntBASIC1.46□□□□□ -2.18
NUP88Q99567 MIR3144-201ENST00000579460 79 ntBASIC1.46□□□□□ -2.18
NUP88Q99567 AC131055.1-201ENST00000584626 316 ntBASIC1.46□□□□□ -2.18
NUP88Q99567 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.46□□□□□ -2.18
NUP88Q99567 AC091932.4-201ENST00000623386 200 ntBASIC1.46□□□□□ -2.18
NUP88Q99567 Y_RNA.52-201ENST00000362760 96 ntBASIC1.45□□□□□ -2.18
NUP88Q99567 SNORD18B-201ENST00000365659 72 ntBASIC1.45□□□□□ -2.18
NUP88Q99567 RNU6-913P-201ENST00000390913 95 ntBASIC1.45□□□□□ -2.18
NUP88Q99567 SNORA75.2-201ENST00000391138 150 ntBASIC1.45□□□□□ -2.18
NUP88Q99567 SNORA75.3-201ENST00000391231 150 ntBASIC1.45□□□□□ -2.18
NUP88Q99567 MIR2115-201ENST00000516657 100 ntBASIC1.45□□□□□ -2.18
NUP88Q99567 PRELID3BP2-201ENST00000605362 201 ntBASIC1.45□□□□□ -2.18
NUP88Q99567 Y_RNA.778-201ENST00000620203 90 ntBASIC1.45□□□□□ -2.18
NUP88Q99567 MIR96-201ENST00000362288 78 ntBASIC1.44□□□□□ -2.18
NUP88Q99567 Y_RNA.191-201ENST00000363972 113 ntBASIC1.44□□□□□ -2.18
NUP88Q99567 Y_RNA.363-201ENST00000365529 113 ntBASIC1.44□□□□□ -2.18
NUP88Q99567 SNORA20-201ENST00000384662 132 ntBASIC1.44□□□□□ -2.18
NUP88Q99567 Y_RNA.584-201ENST00000391090 114 ntBASIC1.44□□□□□ -2.18
NUP88Q99567 MIR513C-201ENST00000401352 84 ntBASIC1.44□□□□□ -2.18
NUP88Q99567 RNU6-394P-201ENST00000410735 107 ntBASIC1.44□□□□□ -2.18
NUP88Q99567 SNORA4-201ENST00000584302 138 ntBASIC1.44□□□□□ -2.18
NUP88Q99567 AP000753.3-201ENST00000604083 169 ntBASIC1.44□□□□□ -2.18
NUP88Q99567 SEPT14P17-201ENST00000617978 177 ntBASIC1.44□□□□□ -2.18
NUP88Q99567 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.44□□□□□ -2.18
NUP88Q99567 AC008163.1-202ENST00000636004 2889 ntBASIC1.43□□□□□ -2.18
NUP88Q99567 Y_RNA.398-201ENST00000383952 99 ntBASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 373.6 ms