Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MIR3935-201ENST00000583472 104 ntBASIC1.97□□□□□ -2.09
MSX2P35548 MIR6841-201ENST00000637129 72 ntBASIC1.97□□□□□ -2.09
MSX2P35548 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.97□□□□□ -2.09
MSX2P35548 MIR424-201ENST00000362227 98 ntBASIC1.96□□□□□ -2.1
MSX2P35548 Y_RNA.78-201ENST00000362970 110 ntBASIC1.96□□□□□ -2.1
MSX2P35548 MIR504-201ENST00000385065 83 ntBASIC1.96□□□□□ -2.1
MSX2P35548 RNU6-1319P-201ENST00000390855 104 ntBASIC1.96□□□□□ -2.1
MSX2P35548 RNU6-747P-201ENST00000390928 104 ntBASIC1.96□□□□□ -2.1
MSX2P35548 SNORA48.3-201ENST00000391081 134 ntBASIC1.96□□□□□ -2.1
MSX2P35548 RNU6-241P-201ENST00000391148 104 ntBASIC1.96□□□□□ -2.1
MSX2P35548 SNORA26.6-201ENST00000391256 115 ntBASIC1.96□□□□□ -2.1
MSX2P35548 SNORA3.2-201ENST00000408221 125 ntBASIC1.96□□□□□ -2.1
MSX2P35548 RNU6-177P-201ENST00000411257 104 ntBASIC1.96□□□□□ -2.1
MSX2P35548 RPS29P29-201ENST00000456396 171 ntBASIC1.96□□□□□ -2.1
MSX2P35548 RNA5SP57-201ENST00000459463 123 ntBASIC1.96□□□□□ -2.1
MSX2P35548 SNORD123-201ENST00000459473 70 ntBASIC1.96□□□□□ -2.1
MSX2P35548 RNU6-904P-201ENST00000516206 101 ntBASIC1.96□□□□□ -2.1
MSX2P35548 RNA5SP200-201ENST00000516360 103 ntBASIC1.96□□□□□ -2.1
MSX2P35548 RNU6-1258P-201ENST00000516911 111 ntBASIC1.96□□□□□ -2.1
MSX2P35548 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.96□□□□□ -2.1
MSX2P35548 AC022254.1-201ENST00000567857 235 ntBASIC1.96□□□□□ -2.1
MSX2P35548 MIR548AR-201ENST00000582191 57 ntBASIC1.96□□□□□ -2.1
MSX2P35548 SNRPGP19-201ENST00000603826 189 ntBASIC1.96□□□□□ -2.1
MSX2P35548 SNORD3E-202ENST00000627253 216 ntBASIC1.96□□□□□ -2.1
MSX2P35548 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
MSX2P35548 RNU6-661P-201ENST00000362409 107 ntBASIC1.95□□□□□ -2.1
MSX2P35548 Y_RNA.171-201ENST00000363760 102 ntBASIC1.95□□□□□ -2.1
MSX2P35548 SNORA70.7-201ENST00000384159 133 ntBASIC1.95□□□□□ -2.1
MSX2P35548 Y_RNA.544-201ENST00000384650 113 ntBASIC1.95□□□□□ -2.1
MSX2P35548 RNU4-53P-201ENST00000410828 140 ntBASIC1.95□□□□□ -2.1
MSX2P35548 RNU2-40P-201ENST00000410833 196 ntBASIC1.95□□□□□ -2.1
MSX2P35548 ATP6V0E1P1-201ENST00000412537 226 ntBASIC1.95□□□□□ -2.1
MSX2P35548 RNU6-109P-201ENST00000516364 107 ntBASIC1.95□□□□□ -2.1
MSX2P35548 RNU6-184P-201ENST00000516514 107 ntBASIC1.95□□□□□ -2.1
MSX2P35548 MIR3618-201ENST00000580330 88 ntBASIC1.95□□□□□ -2.1
MSX2P35548 MIR4524B-201ENST00000581569 115 ntBASIC1.95□□□□□ -2.1
MSX2P35548 SNORD115-19-201ENST00000363098 82 ntBASIC1.94□□□□□ -2.1
MSX2P35548 SNORD115-18-201ENST00000363293 82 ntBASIC1.94□□□□□ -2.1
MSX2P35548 SNORD115-17-201ENST00000364612 82 ntBASIC1.94□□□□□ -2.1
MSX2P35548 RNU6-913P-201ENST00000390913 95 ntBASIC1.94□□□□□ -2.1
MSX2P35548 RNU6-816P-201ENST00000390914 107 ntBASIC1.94□□□□□ -2.1
MSX2P35548 RNU6-1268P-201ENST00000391214 107 ntBASIC1.94□□□□□ -2.1
MSX2P35548 RNU6-1239P-201ENST00000391310 107 ntBASIC1.94□□□□□ -2.1
MSX2P35548 RNU6-1190P-201ENST00000410811 104 ntBASIC1.94□□□□□ -2.1
MSX2P35548 AC113410.1-201ENST00000505029 247 ntBASIC1.94□□□□□ -2.1
MSX2P35548 SNORA40.13-201ENST00000516379 120 ntBASIC1.94□□□□□ -2.1
MSX2P35548 RNU6-958P-201ENST00000516995 106 ntBASIC1.94□□□□□ -2.1
MSX2P35548 AL096840.1-201ENST00000603287 93 ntBASIC1.94□□□□□ -2.1
MSX2P35548 Y_RNA.773-201ENST00000607168 90 ntBASIC1.94□□□□□ -2.1
MSX2P35548 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.94□□□□□ -2.1
MSX2P35548 Y_RNA.818-201ENST00000618813 71 ntBASIC1.94□□□□□ -2.1
MSX2P35548 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
MSX2P35548 MIR6132-201ENST00000622083 109 ntBASIC1.94□□□□□ -2.1
MSX2P35548 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.94□□□□□ -2.1
MSX2P35548 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.94□□□□□ -2.1
MSX2P35548 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.93□□□□□ -2.1
MSX2P35548 SNORD115-2-201ENST00000362842 82 ntBASIC1.93□□□□□ -2.1
MSX2P35548 RNU6-457P-201ENST00000363999 107 ntBASIC1.93□□□□□ -2.1
MSX2P35548 SNORD115-20-201ENST00000365099 82 ntBASIC1.93□□□□□ -2.1
MSX2P35548 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.93□□□□□ -2.1
MSX2P35548 RNA5SP425-201ENST00000410336 112 ntBASIC1.93□□□□□ -2.1
MSX2P35548 MIR1912-201ENST00000410389 80 ntBASIC1.93□□□□□ -2.1
MSX2P35548 RPL39P25-201ENST00000449384 154 ntBASIC1.93□□□□□ -2.1
MSX2P35548 RNU7-73P-201ENST00000458743 63 ntBASIC1.93□□□□□ -2.1
MSX2P35548 RNU7-67P-201ENST00000459003 62 ntBASIC1.93□□□□□ -2.1
MSX2P35548 snoU13.15-201ENST00000459407 104 ntBASIC1.93□□□□□ -2.1
MSX2P35548 RNU6-237P-201ENST00000515985 71 ntBASIC1.93□□□□□ -2.1
MSX2P35548 SNORA72.7-201ENST00000516349 94 ntBASIC1.93□□□□□ -2.1
MSX2P35548 RNU7-53P-201ENST00000516705 60 ntBASIC1.93□□□□□ -2.1
MSX2P35548 SNORA31.17-201ENST00000516953 127 ntBASIC1.93□□□□□ -2.1
MSX2P35548 RNU6-158P-201ENST00000517104 100 ntBASIC1.93□□□□□ -2.1
MSX2P35548 MIR4713-201ENST00000582691 75 ntBASIC1.93□□□□□ -2.1
MSX2P35548 uc_338.20-201ENST00000621563 178 ntBASIC1.93□□□□□ -2.1
MSX2P35548 MIR1255B1-201ENST00000636325 63 ntBASIC1.93□□□□□ -2.1
MSX2P35548 SNORA22.1-201ENST00000362701 134 ntBASIC1.92□□□□□ -2.1
MSX2P35548 Y_RNA.470-201ENST00000384307 117 ntBASIC1.92□□□□□ -2.1
MSX2P35548 MIR676-201ENST00000390702 67 ntBASIC1.92□□□□□ -2.1
MSX2P35548 SUMO2P12-201ENST00000405924 140 ntBASIC1.92□□□□□ -2.1
MSX2P35548 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.92□□□□□ -2.1
MSX2P35548 RPL23AP42-201ENST00000471152 471 ntBASIC1.92□□□□□ -2.1
MSX2P35548 RN7SL274P-201ENST00000492268 272 ntBASIC1.92□□□□□ -2.1
MSX2P35548 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.92□□□□□ -2.1
MSX2P35548 AC141557.1-201ENST00000540982 400 ntBASIC1.92□□□□□ -2.1
MSX2P35548 MIR4769-201ENST00000584126 77 ntBASIC1.92□□□□□ -2.1
MSX2P35548 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.92□□□□□ -2.1
MSX2P35548 AL513534.2-201ENST00000603836 250 ntBASIC1.92□□□□□ -2.1
MSX2P35548 AL020996.3-201ENST00000606617 222 ntBASIC1.92□□□□□ -2.1
MSX2P35548 MIR4791-201ENST00000607666 84 ntBASIC1.92□□□□□ -2.1
MSX2P35548 AC243994.1-201ENST00000618627 109 ntBASIC1.92□□□□□ -2.1
MSX2P35548 MIR6717-201ENST00000622747 73 ntBASIC1.92□□□□□ -2.1
MSX2P35548 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.92□□□□□ -2.1
MSX2P35548 MIR488-201ENST00000365739 83 ntBASIC1.91□□□□□ -2.1
MSX2P35548 Y_RNA.430-201ENST00000384081 110 ntBASIC1.91□□□□□ -2.1
MSX2P35548 RNU6-49P-201ENST00000384256 107 ntBASIC1.91□□□□□ -2.1
MSX2P35548 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
MSX2P35548 RNU4-69P-201ENST00000410677 143 ntBASIC1.91□□□□□ -2.1
MSX2P35548 RNA5SP489-201ENST00000410986 109 ntBASIC1.91□□□□□ -2.1
MSX2P35548 RNU7-113P-201ENST00000459273 62 ntBASIC1.91□□□□□ -2.1
MSX2P35548 MIR1270-201ENST00000459320 83 ntBASIC1.91□□□□□ -2.1
MSX2P35548 SNORA74.3-201ENST00000517108 154 ntBASIC1.91□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 167.9 ms