Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SNORA25.3-201ENST00000363205 127 ntBASIC1.1□□□□□ -2.23
MSH3P20585 RNU6-392P-201ENST00000364926 101 ntBASIC1.1□□□□□ -2.23
MSH3P20585 SNORA75.5-201ENST00000391291 81 ntBASIC1.1□□□□□ -2.23
MSH3P20585 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.1□□□□□ -2.23
MSH3P20585 RNU7-96P-201ENST00000459535 64 ntBASIC1.1□□□□□ -2.23
MSH3P20585 RNU6-998P-201ENST00000515894 101 ntBASIC1.1□□□□□ -2.23
MSH3P20585 SCARNA15-202ENST00000516881 127 ntBASIC1.1□□□□□ -2.23
MSH3P20585 RNU6-958P-201ENST00000516995 106 ntBASIC1.1□□□□□ -2.23
MSH3P20585 MIR4295-201ENST00000585286 85 ntBASIC1.1□□□□□ -2.23
MSH3P20585 AC104465.1-201ENST00000611365 139 ntBASIC1.1□□□□□ -2.23
MSH3P20585 MIR6844-201ENST00000637122 62 ntBASIC1.1□□□□□ -2.23
MSH3P20585 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.09□□□□□ -2.23
MSH3P20585 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.09□□□□□ -2.23
MSH3P20585 MIR337-201ENST00000362281 93 ntBASIC1.09□□□□□ -2.23
MSH3P20585 RNU6-804P-201ENST00000384286 107 ntBASIC1.09□□□□□ -2.23
MSH3P20585 MIR1185-1-201ENST00000408598 86 ntBASIC1.09□□□□□ -2.23
MSH3P20585 MIR1302-7-201ENST00000408841 72 ntBASIC1.09□□□□□ -2.23
MSH3P20585 AL035398.1-201ENST00000430869 322 ntBASIC1.09□□□□□ -2.23
MSH3P20585 RNU7-73P-201ENST00000458743 63 ntBASIC1.09□□□□□ -2.23
MSH3P20585 snoU13.16-201ENST00000459350 104 ntBASIC1.09□□□□□ -2.23
MSH3P20585 AC087343.1-201ENST00000477341 475 ntBASIC1.09□□□□□ -2.23
MSH3P20585 MIR3144-201ENST00000579460 79 ntBASIC1.09□□□□□ -2.23
MSH3P20585 MIR548AO-201ENST00000579992 96 ntBASIC1.09□□□□□ -2.23
MSH3P20585 RNU6-53P-201ENST00000365367 106 ntBASIC1.08□□□□□ -2.24
MSH3P20585 RNU6-1130P-201ENST00000365434 107 ntBASIC1.08□□□□□ -2.24
MSH3P20585 Y_RNA.351-201ENST00000365436 96 ntBASIC1.08□□□□□ -2.24
MSH3P20585 Y_RNA.363-201ENST00000365529 113 ntBASIC1.08□□□□□ -2.24
MSH3P20585 RNU6-449P-201ENST00000383914 107 ntBASIC1.08□□□□□ -2.24
MSH3P20585 Y_RNA.464-201ENST00000384282 110 ntBASIC1.08□□□□□ -2.24
MSH3P20585 MT-TR-201ENST00000387439 65 ntBASIC1.08□□□□□ -2.24
MSH3P20585 RNU6-910P-201ENST00000390844 107 ntBASIC1.08□□□□□ -2.24
MSH3P20585 MIR548I3-201ENST00000408378 149 ntBASIC1.08□□□□□ -2.24
MSH3P20585 MIR548I1-201ENST00000408810 149 ntBASIC1.08□□□□□ -2.24
MSH3P20585 RNU6-588P-201ENST00000410281 105 ntBASIC1.08□□□□□ -2.24
MSH3P20585 AL392103.1-201ENST00000447000 198 ntBASIC1.08□□□□□ -2.24
MSH3P20585 RNU7-53P-201ENST00000516705 60 ntBASIC1.08□□□□□ -2.24
MSH3P20585 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.08□□□□□ -2.24
MSH3P20585 MIR103A2-201ENST00000362154 78 ntBASIC1.07□□□□□ -2.24
MSH3P20585 RNY1P10-201ENST00000363268 113 ntBASIC1.07□□□□□ -2.24
MSH3P20585 RNU6-818P-201ENST00000364837 108 ntBASIC1.07□□□□□ -2.24
MSH3P20585 RNU6-913P-201ENST00000390913 95 ntBASIC1.07□□□□□ -2.24
MSH3P20585 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.07□□□□□ -2.24
MSH3P20585 MRPL35P3-201ENST00000421557 364 ntBASIC1.07□□□□□ -2.24
MSH3P20585 RNU7-80P-201ENST00000459562 61 ntBASIC1.07□□□□□ -2.24
MSH3P20585 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.07□□□□□ -2.24
MSH3P20585 RNU6-1149P-201ENST00000516810 97 ntBASIC1.07□□□□□ -2.24
MSH3P20585 SNORA70.22-201ENST00000517160 124 ntBASIC1.07□□□□□ -2.24
MSH3P20585 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.07□□□□□ -2.24
MSH3P20585 Y_RNA.778-201ENST00000620203 90 ntBASIC1.07□□□□□ -2.24
MSH3P20585 MTND5P32-201ENST00000560711 1802 ntBASIC1.07□□□□□ -2.24
MSH3P20585 Y_RNA.52-201ENST00000362760 96 ntBASIC1.06□□□□□ -2.24
MSH3P20585 Y_RNA.398-201ENST00000383952 99 ntBASIC1.06□□□□□ -2.24
MSH3P20585 Y_RNA.454-201ENST00000384224 113 ntBASIC1.06□□□□□ -2.24
MSH3P20585 Y_RNA.497-201ENST00000384447 98 ntBASIC1.06□□□□□ -2.24
MSH3P20585 SNORD37.2-201ENST00000391075 66 ntBASIC1.06□□□□□ -2.24
MSH3P20585 RNU2-11P-201ENST00000459191 187 ntBASIC1.06□□□□□ -2.24
MSH3P20585 OR2A41P-201ENST00000473586 105 ntBASIC1.06□□□□□ -2.24
MSH3P20585 SNORD79.1-201ENST00000516069 84 ntBASIC1.06□□□□□ -2.24
MSH3P20585 RNU11-2P-201ENST00000516898 142 ntBASIC1.06□□□□□ -2.24
MSH3P20585 AC131055.1-201ENST00000584626 316 ntBASIC1.06□□□□□ -2.24
MSH3P20585 AL022345.2-201ENST00000606307 135 ntBASIC1.06□□□□□ -2.24
MSH3P20585 MIR8055-201ENST00000610739 97 ntBASIC1.06□□□□□ -2.24
MSH3P20585 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
MSH3P20585 MIR342-201ENST00000362212 99 ntBASIC1.05□□□□□ -2.24
MSH3P20585 RNY1P11-201ENST00000363759 113 ntBASIC1.05□□□□□ -2.24
MSH3P20585 RNU6-151P-201ENST00000364158 107 ntBASIC1.05□□□□□ -2.24
MSH3P20585 SNORD116-18-201ENST00000383961 92 ntBASIC1.05□□□□□ -2.24
MSH3P20585 SNORA25-201ENST00000384384 134 ntBASIC1.05□□□□□ -2.24
MSH3P20585 SNORA80D-201ENST00000384488 135 ntBASIC1.05□□□□□ -2.24
MSH3P20585 SNORA75.2-201ENST00000391138 150 ntBASIC1.05□□□□□ -2.24
MSH3P20585 SNORA75.3-201ENST00000391231 150 ntBASIC1.05□□□□□ -2.24
MSH3P20585 RNU6-1212P-201ENST00000517023 104 ntBASIC1.05□□□□□ -2.24
MSH3P20585 RNA5SP404-201ENST00000517118 132 ntBASIC1.05□□□□□ -2.24
MSH3P20585 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.05□□□□□ -2.24
MSH3P20585 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.05□□□□□ -2.24
MSH3P20585 AC091932.4-201ENST00000623386 200 ntBASIC1.05□□□□□ -2.24
MSH3P20585 AC027335.2-201ENST00000624030 375 ntBASIC1.05□□□□□ -2.24
MSH3P20585 AC021753.1-201ENST00000635724 168 ntBASIC1.05□□□□□ -2.24
MSH3P20585 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.04□□□□□ -2.24
MSH3P20585 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
MSH3P20585 Y_RNA.8-201ENST00000362353 102 ntBASIC1.04□□□□□ -2.24
MSH3P20585 Y_RNA.251-201ENST00000364551 99 ntBASIC1.04□□□□□ -2.24
MSH3P20585 RNU4-11P-201ENST00000365287 132 ntBASIC1.04□□□□□ -2.24
MSH3P20585 SNORA22-201ENST00000383907 134 ntBASIC1.04□□□□□ -2.24
MSH3P20585 RNU6-209P-201ENST00000384118 107 ntBASIC1.04□□□□□ -2.24
MSH3P20585 SNORA22C-201ENST00000384614 134 ntBASIC1.04□□□□□ -2.24
MSH3P20585 SNORD12-201ENST00000391002 90 ntBASIC1.04□□□□□ -2.24
MSH3P20585 AC090844.1-201ENST00000422019 156 ntBASIC1.04□□□□□ -2.24
MSH3P20585 RNU7-21P-201ENST00000459430 62 ntBASIC1.04□□□□□ -2.24
MSH3P20585 RNU7-40P-201ENST00000516397 64 ntBASIC1.04□□□□□ -2.24
MSH3P20585 MTND5P41-201ENST00000517498 206 ntBASIC1.04□□□□□ -2.24
MSH3P20585 AC112693.2-201ENST00000556538 232 ntBASIC1.04□□□□□ -2.24
MSH3P20585 AL020996.3-201ENST00000606617 222 ntBASIC1.04□□□□□ -2.24
MSH3P20585 MIR6516-201ENST00000630554 81 ntBASIC1.04□□□□□ -2.24
MSH3P20585 Z97988.1-201ENST00000637697 135 ntBASIC1.04□□□□□ -2.24
MSH3P20585 AL596211.1-201ENST00000569873 2277 ntBASIC1.04□□□□□ -2.24
MSH3P20585 MIR302B-201ENST00000362188 73 ntBASIC1.03□□□□□ -2.24
MSH3P20585 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.03□□□□□ -2.24
MSH3P20585 RNA5SP236-201ENST00000516169 116 ntBASIC1.03□□□□□ -2.24
MSH3P20585 RNU6-255P-201ENST00000516957 105 ntBASIC1.03□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 218.4 ms