Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 RNA5SP153-201ENST00000516498 76 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 AC109810.1-201ENST00000534066 224 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORD115-40-201ENST00000606510 82 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 AL020996.3-201ENST00000606617 222 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 AC103810.9-201ENST00000606688 112 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.86□□□□□ -2.27
LIME1Q9H400 AC008163.1-202ENST00000636004 2889 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORD115-28-201ENST00000363931 81 ntBASIC0.85□□□□□ -2.27
LIME1Q9H400 Y_RNA.262-201ENST00000364641 102 ntBASIC0.85□□□□□ -2.27
LIME1Q9H400 Y_RNA.277-201ENST00000364754 102 ntBASIC0.85□□□□□ -2.27
LIME1Q9H400 SNORA22-201ENST00000383907 134 ntBASIC0.85□□□□□ -2.27
LIME1Q9H400 SNORA51.10-201ENST00000384418 136 ntBASIC0.85□□□□□ -2.27
LIME1Q9H400 SNORA22C-201ENST00000384614 134 ntBASIC0.85□□□□□ -2.27
LIME1Q9H400 MIR200A-201ENST00000384875 90 ntBASIC0.85□□□□□ -2.27
LIME1Q9H400 RNU6-1228P-201ENST00000391014 107 ntBASIC0.85□□□□□ -2.27
LIME1Q9H400 RNU6-847P-201ENST00000411115 108 ntBASIC0.85□□□□□ -2.27
LIME1Q9H400 RNU6-453P-201ENST00000516819 85 ntBASIC0.85□□□□□ -2.27
LIME1Q9H400 HSPE1P19-201ENST00000603327 295 ntBASIC0.85□□□□□ -2.27
LIME1Q9H400 AL353621.2-201ENST00000605340 133 ntBASIC0.85□□□□□ -2.27
LIME1Q9H400 MIR4791-201ENST00000607666 84 ntBASIC0.85□□□□□ -2.27
LIME1Q9H400 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.85□□□□□ -2.27
LIME1Q9H400 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.84□□□□□ -2.27
LIME1Q9H400 Y_RNA.91-201ENST00000363042 107 ntBASIC0.84□□□□□ -2.27
LIME1Q9H400 RNU4-38P-201ENST00000364472 129 ntBASIC0.84□□□□□ -2.27
LIME1Q9H400 Y_RNA.350-201ENST00000365409 98 ntBASIC0.84□□□□□ -2.27
LIME1Q9H400 Y_RNA.432-201ENST00000384087 111 ntBASIC0.84□□□□□ -2.27
LIME1Q9H400 SNORD61-201ENST00000384252 73 ntBASIC0.84□□□□□ -2.27
LIME1Q9H400 Y_RNA.539-201ENST00000384635 107 ntBASIC0.84□□□□□ -2.27
LIME1Q9H400 MIR570-201ENST00000384917 97 ntBASIC0.84□□□□□ -2.27
LIME1Q9H400 SNORA26-201ENST00000391286 122 ntBASIC0.84□□□□□ -2.27
LIME1Q9H400 RNU6-613P-201ENST00000410412 108 ntBASIC0.84□□□□□ -2.27
LIME1Q9H400 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.84□□□□□ -2.27
LIME1Q9H400 RNU6-1299P-201ENST00000516316 100 ntBASIC0.84□□□□□ -2.27
LIME1Q9H400 RNU6-365P-201ENST00000517113 106 ntBASIC0.84□□□□□ -2.27
LIME1Q9H400 AP000942.4-201ENST00000604811 241 ntBASIC0.84□□□□□ -2.27
LIME1Q9H400 MTND1P7-201ENST00000632801 297 ntBASIC0.84□□□□□ -2.27
LIME1Q9H400 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.84□□□□□ -2.28
LIME1Q9H400 Y_RNA.37-201ENST00000362606 108 ntBASIC0.83□□□□□ -2.28
LIME1Q9H400 RNU6-103P-201ENST00000363686 107 ntBASIC0.83□□□□□ -2.28
LIME1Q9H400 Y_RNA.634-201ENST00000364811 113 ntBASIC0.83□□□□□ -2.28
LIME1Q9H400 Y_RNA.292-201ENST00000364904 97 ntBASIC0.83□□□□□ -2.28
LIME1Q9H400 RNY4P28-201ENST00000365281 93 ntBASIC0.83□□□□□ -2.28
LIME1Q9H400 Y_RNA.478-201ENST00000384358 107 ntBASIC0.83□□□□□ -2.28
LIME1Q9H400 RNU6-1067P-201ENST00000384752 107 ntBASIC0.83□□□□□ -2.28
LIME1Q9H400 MT-TT-201ENST00000387460 66 ntBASIC0.83□□□□□ -2.28
LIME1Q9H400 AL606845.1-201ENST00000404881 255 ntBASIC0.83□□□□□ -2.28
LIME1Q9H400 RNU4-43P-201ENST00000410628 137 ntBASIC0.83□□□□□ -2.28
LIME1Q9H400 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.83□□□□□ -2.28
LIME1Q9H400 SNRPGP8-201ENST00000454064 226 ntBASIC0.83□□□□□ -2.28
LIME1Q9H400 SNORD124-201ENST00000459577 104 ntBASIC0.83□□□□□ -2.28
LIME1Q9H400 RNU6-504P-201ENST00000516568 104 ntBASIC0.83□□□□□ -2.28
LIME1Q9H400 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.83□□□□□ -2.28
LIME1Q9H400 AC131055.1-201ENST00000584626 316 ntBASIC0.83□□□□□ -2.28
LIME1Q9H400 AC243994.1-201ENST00000618627 109 ntBASIC0.83□□□□□ -2.28
LIME1Q9H400 AC012676.2-201ENST00000619258 186 ntBASIC0.83□□□□□ -2.28
LIME1Q9H400 MIR6516-201ENST00000630554 81 ntBASIC0.83□□□□□ -2.28
LIME1Q9H400 MIR377-201ENST00000362145 69 ntBASIC0.82□□□□□ -2.28
LIME1Q9H400 Y_RNA.54-201ENST00000362766 105 ntBASIC0.82□□□□□ -2.28
LIME1Q9H400 SNORD45.3-201ENST00000363836 72 ntBASIC0.82□□□□□ -2.28
LIME1Q9H400 SNORD114-24-201ENST00000365029 72 ntBASIC0.82□□□□□ -2.28
LIME1Q9H400 Y_RNA.452-201ENST00000384202 108 ntBASIC0.82□□□□□ -2.28
LIME1Q9H400 MT-TN-201ENST00000387400 73 ntBASIC0.82□□□□□ -2.28
LIME1Q9H400 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.82□□□□□ -2.28
LIME1Q9H400 AL118496.2-201ENST00000448300 230 ntBASIC0.82□□□□□ -2.28
LIME1Q9H400 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.82□□□□□ -2.28
LIME1Q9H400 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.82□□□□□ -2.28
LIME1Q9H400 RNU6-693P-201ENST00000516134 107 ntBASIC0.82□□□□□ -2.28
LIME1Q9H400 SNORA18.4-201ENST00000516440 124 ntBASIC0.82□□□□□ -2.28
LIME1Q9H400 MIR548AO-201ENST00000579992 96 ntBASIC0.82□□□□□ -2.28
LIME1Q9H400 MIR4714-201ENST00000580728 77 ntBASIC0.82□□□□□ -2.28
LIME1Q9H400 AC062037.2-201ENST00000610137 73 ntBASIC0.82□□□□□ -2.28
LIME1Q9H400 U4.1-201ENST00000620349 87 ntBASIC0.82□□□□□ -2.28
LIME1Q9H400 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.81□□□□□ -2.28
LIME1Q9H400 Y_RNA.193-201ENST00000363979 102 ntBASIC0.81□□□□□ -2.28
LIME1Q9H400 Y_RNA.494-201ENST00000384432 111 ntBASIC0.81□□□□□ -2.28
LIME1Q9H400 MIR532-201ENST00000385025 91 ntBASIC0.81□□□□□ -2.28
LIME1Q9H400 SNORA40.5-201ENST00000391061 128 ntBASIC0.81□□□□□ -2.28
LIME1Q9H400 RNU7-73P-201ENST00000458743 63 ntBASIC0.81□□□□□ -2.28
LIME1Q9H400 MIR2115-201ENST00000516657 100 ntBASIC0.81□□□□□ -2.28
LIME1Q9H400 RNU6-197P-201ENST00000516680 100 ntBASIC0.81□□□□□ -2.28
LIME1Q9H400 RNU6-1270P-201ENST00000517128 108 ntBASIC0.81□□□□□ -2.28
LIME1Q9H400 AP003484.1-201ENST00000530974 250 ntBASIC0.81□□□□□ -2.28
LIME1Q9H400 MIR4503-201ENST00000582187 83 ntBASIC0.81□□□□□ -2.28
LIME1Q9H400 AC106800.4-201ENST00000614905 153 ntBASIC0.81□□□□□ -2.28
LIME1Q9H400 AC134878.1-201ENST00000619901 243 ntBASIC0.81□□□□□ -2.28
LIME1Q9H400 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.81□□□□□ -2.28
LIME1Q9H400 RNU6-654P-201ENST00000364373 107 ntBASIC0.8□□□□□ -2.28
LIME1Q9H400 Y_RNA.241-201ENST00000364470 117 ntBASIC0.8□□□□□ -2.28
LIME1Q9H400 RNU6-702P-201ENST00000364982 107 ntBASIC0.8□□□□□ -2.28
LIME1Q9H400 RNU2-70P-201ENST00000410718 179 ntBASIC0.8□□□□□ -2.28
LIME1Q9H400 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC0.8□□□□□ -2.28
LIME1Q9H400 snoU13.16-201ENST00000459350 104 ntBASIC0.8□□□□□ -2.28
LIME1Q9H400 RNU6-1023P-201ENST00000516137 106 ntBASIC0.8□□□□□ -2.28
LIME1Q9H400 Y_RNA.680-201ENST00000516441 93 ntBASIC0.8□□□□□ -2.28
LIME1Q9H400 SNORD36C-201ENST00000516733 66 ntBASIC0.8□□□□□ -2.28
LIME1Q9H400 AC036111.3-201ENST00000526389 112 ntBASIC0.8□□□□□ -2.28
LIME1Q9H400 MIR6857-201ENST00000613267 93 ntBASIC0.8□□□□□ -2.28
LIME1Q9H400 Y_RNA.23-201ENST00000362496 106 ntBASIC0.79□□□□□ -2.28
LIME1Q9H400 Y_RNA.121-201ENST00000363309 113 ntBASIC0.79□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 849.5 ms