Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 Y_RNA.162-201ENST00000363683 102 ntBASIC0.91□□□□□ -2.26
LIME1Q9H400 Y_RNA.370-201ENST00000365589 108 ntBASIC0.91□□□□□ -2.26
LIME1Q9H400 SNORD24-201ENST00000383884 75 ntBASIC0.91□□□□□ -2.26
LIME1Q9H400 Y_RNA.572-201ENST00000384757 98 ntBASIC0.91□□□□□ -2.26
LIME1Q9H400 U8.17-201ENST00000391292 132 ntBASIC0.91□□□□□ -2.26
LIME1Q9H400 MIR548O-201ENST00000408583 114 ntBASIC0.91□□□□□ -2.26
LIME1Q9H400 MIR1302-7-201ENST00000408841 72 ntBASIC0.91□□□□□ -2.26
LIME1Q9H400 Y_RNA.590-201ENST00000410140 107 ntBASIC0.91□□□□□ -2.26
LIME1Q9H400 RNU2-38P-201ENST00000410856 79 ntBASIC0.91□□□□□ -2.26
LIME1Q9H400 RNU7-25P-201ENST00000516544 62 ntBASIC0.91□□□□□ -2.26
LIME1Q9H400 AC007751.1-201ENST00000529260 376 ntBASIC0.91□□□□□ -2.26
LIME1Q9H400 RN7SL793P-201ENST00000583259 296 ntBASIC0.91□□□□□ -2.26
LIME1Q9H400 AC211469.2-201ENST00000605461 205 ntBASIC0.91□□□□□ -2.26
LIME1Q9H400 SNORD114-21-201ENST00000606412 72 ntBASIC0.91□□□□□ -2.26
LIME1Q9H400 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.91□□□□□ -2.26
LIME1Q9H400 RNU6-653P-201ENST00000363074 106 ntBASIC0.9□□□□□ -2.27
LIME1Q9H400 Y_RNA.288-201ENST00000364854 92 ntBASIC0.9□□□□□ -2.27
LIME1Q9H400 RNU6-484P-201ENST00000384016 107 ntBASIC0.9□□□□□ -2.27
LIME1Q9H400 RNY3P5-201ENST00000384127 102 ntBASIC0.9□□□□□ -2.27
LIME1Q9H400 Y_RNA.547-201ENST00000384654 119 ntBASIC0.9□□□□□ -2.27
LIME1Q9H400 MIR548A2-201ENST00000384956 97 ntBASIC0.9□□□□□ -2.27
LIME1Q9H400 RNU6-381P-201ENST00000391259 108 ntBASIC0.9□□□□□ -2.27
LIME1Q9H400 SNORD58.1-201ENST00000391313 66 ntBASIC0.9□□□□□ -2.27
LIME1Q9H400 AL078595.1-201ENST00000404458 226 ntBASIC0.9□□□□□ -2.27
LIME1Q9H400 MIR548H3-201ENST00000408771 118 ntBASIC0.9□□□□□ -2.27
LIME1Q9H400 RNU2-55P-201ENST00000411146 174 ntBASIC0.9□□□□□ -2.27
LIME1Q9H400 MRPL35P3-201ENST00000421557 364 ntBASIC0.9□□□□□ -2.27
LIME1Q9H400 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.9□□□□□ -2.27
LIME1Q9H400 RPS29P28-201ENST00000446439 141 ntBASIC0.9□□□□□ -2.27
LIME1Q9H400 AL392103.1-201ENST00000447000 198 ntBASIC0.9□□□□□ -2.27
LIME1Q9H400 OR2A41P-201ENST00000473586 105 ntBASIC0.9□□□□□ -2.27
LIME1Q9H400 MIR4643-201ENST00000577473 78 ntBASIC0.9□□□□□ -2.27
LIME1Q9H400 AC097639.2-201ENST00000603159 172 ntBASIC0.9□□□□□ -2.27
LIME1Q9H400 AL391516.1-201ENST00000554380 2449 ntBASIC0.89□□□□□ -2.27
LIME1Q9H400 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
LIME1Q9H400 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.89□□□□□ -2.27
LIME1Q9H400 MIR103A2-201ENST00000362154 78 ntBASIC0.89□□□□□ -2.27
LIME1Q9H400 Y_RNA.24-201ENST00000362508 103 ntBASIC0.89□□□□□ -2.27
LIME1Q9H400 SNORA24-201ENST00000384096 131 ntBASIC0.89□□□□□ -2.27
LIME1Q9H400 Y_RNA.486-201ENST00000384398 107 ntBASIC0.89□□□□□ -2.27
LIME1Q9H400 Y_RNA.537-201ENST00000384626 109 ntBASIC0.89□□□□□ -2.27
LIME1Q9H400 MIR216A-201ENST00000385063 110 ntBASIC0.89□□□□□ -2.27
LIME1Q9H400 MIR616-201ENST00000385293 97 ntBASIC0.89□□□□□ -2.27
LIME1Q9H400 AC002429.1-201ENST00000437672 148 ntBASIC0.89□□□□□ -2.27
LIME1Q9H400 RNU11-2P-201ENST00000516898 142 ntBASIC0.89□□□□□ -2.27
LIME1Q9H400 RNU7-181P-201ENST00000517234 74 ntBASIC0.89□□□□□ -2.27
LIME1Q9H400 CYP3A137P-201ENST00000562436 69 ntBASIC0.89□□□□□ -2.27
LIME1Q9H400 MIR4251-201ENST00000635819 61 ntBASIC0.89□□□□□ -2.27
LIME1Q9H400 Y_RNA.66-201ENST00000362862 102 ntBASIC0.88□□□□□ -2.27
LIME1Q9H400 RNU6-888P-201ENST00000363010 101 ntBASIC0.88□□□□□ -2.27
LIME1Q9H400 snoU2_19.4-201ENST00000364329 80 ntBASIC0.88□□□□□ -2.27
LIME1Q9H400 SNORA1.2-201ENST00000365189 134 ntBASIC0.88□□□□□ -2.27
LIME1Q9H400 MIR518F-201ENST00000384973 87 ntBASIC0.88□□□□□ -2.27
LIME1Q9H400 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.88□□□□□ -2.27
LIME1Q9H400 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.88□□□□□ -2.27
LIME1Q9H400 Y_RNA.666-201ENST00000516187 112 ntBASIC0.88□□□□□ -2.27
LIME1Q9H400 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.88□□□□□ -2.27
LIME1Q9H400 AL442067.1-201ENST00000613261 223 ntBASIC0.88□□□□□ -2.27
LIME1Q9H400 SEPT14P17-201ENST00000617978 177 ntBASIC0.88□□□□□ -2.27
LIME1Q9H400 AL365265.1-201ENST00000621045 234 ntBASIC0.88□□□□□ -2.27
LIME1Q9H400 Y_RNA.76-201ENST00000362931 109 ntBASIC0.87□□□□□ -2.27
LIME1Q9H400 RNU1-133P-201ENST00000364867 167 ntBASIC0.87□□□□□ -2.27
LIME1Q9H400 RNU4-17P-201ENST00000365598 141 ntBASIC0.87□□□□□ -2.27
LIME1Q9H400 Y_RNA.416-201ENST00000384014 113 ntBASIC0.87□□□□□ -2.27
LIME1Q9H400 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.87□□□□□ -2.27
LIME1Q9H400 MTND3P2-201ENST00000438452 342 ntBASIC0.87□□□□□ -2.27
LIME1Q9H400 RNU7-90P-201ENST00000459216 62 ntBASIC0.87□□□□□ -2.27
LIME1Q9H400 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.87□□□□□ -2.27
LIME1Q9H400 SCARNA8-201ENST00000515924 131 ntBASIC0.87□□□□□ -2.27
LIME1Q9H400 MIR4698-201ENST00000577795 80 ntBASIC0.87□□□□□ -2.27
LIME1Q9H400 SNORD115-34-201ENST00000362441 82 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 Y_RNA.20-201ENST00000362479 113 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORD115-12-201ENST00000362583 82 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORD115-29-201ENST00000362834 82 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORD115-9-201ENST00000362912 82 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORD115-21-201ENST00000362963 81 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORD115-14-201ENST00000363090 81 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORA25.3-201ENST00000363205 127 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORD115-13-201ENST00000363358 82 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORD115-41-201ENST00000363608 82 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORD115-11-201ENST00000363616 82 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORD115-5-201ENST00000363633 82 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORD115-39-201ENST00000363694 82 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORD115-4-201ENST00000363810 82 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORD115-16-201ENST00000363887 82 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORD115-6-201ENST00000363942 82 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORD115-42-201ENST00000364273 82 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORD115-15-201ENST00000364809 81 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORD115-1-201ENST00000364961 82 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORD115-26-201ENST00000365067 82 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORD115-10-201ENST00000365073 81 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORD115-43-201ENST00000365503 82 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 SNORD115-36-201ENST00000365629 82 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 MIR1302-3-201ENST00000408128 138 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 RNU6-938P-201ENST00000411285 103 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.86□□□□□ -2.27
LIME1Q9H400 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.86□□□□□ -2.27
LIME1Q9H400 AC087499.4-201ENST00000448505 178 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 MTND1P19-201ENST00000511780 315 ntBASIC0.86□□□□□ -2.27
LIME1Q9H400 Y_RNA.679-201ENST00000516416 91 ntBASIC0.86□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 203.8 ms