Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 Y_RNA.541-201ENST00000384640 113 ntBASIC0.43□□□□□ -2.34
SHMT2P34897 RNU6-101P-201ENST00000410323 104 ntBASIC0.43□□□□□ -2.34
SHMT2P34897 AC022028.1-201ENST00000412054 408 ntBASIC0.43□□□□□ -2.34
SHMT2P34897 BTF3P11-201ENST00000426582 477 ntBASIC0.43□□□□□ -2.34
SHMT2P34897 AC015818.7-201ENST00000428754 109 ntBASIC0.43□□□□□ -2.34
SHMT2P34897 AC087499.7-201ENST00000441958 109 ntBASIC0.43□□□□□ -2.34
SHMT2P34897 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.43□□□□□ -2.34
SHMT2P34897 RNU2-31P-201ENST00000516954 155 ntBASIC0.43□□□□□ -2.34
SHMT2P34897 Y_RNA.721-201ENST00000517207 102 ntBASIC0.43□□□□□ -2.34
SHMT2P34897 MIR4711-201ENST00000578274 70 ntBASIC0.43□□□□□ -2.34
SHMT2P34897 AP000942.4-201ENST00000604811 241 ntBASIC0.43□□□□□ -2.34
SHMT2P34897 AC134878.1-201ENST00000619901 243 ntBASIC0.43□□□□□ -2.34
SHMT2P34897 MTND4P29-201ENST00000503122 1372 ntBASIC0.43□□□□□ -2.34
SHMT2P34897 Y_RNA.389-201ENST00000383924 113 ntBASIC0.42□□□□□ -2.34
SHMT2P34897 Y_RNA.394-201ENST00000383942 103 ntBASIC0.42□□□□□ -2.34
SHMT2P34897 SNORA36.2-201ENST00000384004 127 ntBASIC0.42□□□□□ -2.34
SHMT2P34897 RNU6-1237P-201ENST00000384777 107 ntBASIC0.42□□□□□ -2.34
SHMT2P34897 MIR548A2-201ENST00000384956 97 ntBASIC0.42□□□□□ -2.34
SHMT2P34897 Y_RNA.587-201ENST00000391210 103 ntBASIC0.42□□□□□ -2.34
SHMT2P34897 AC244023.1-201ENST00000426884 112 ntBASIC0.42□□□□□ -2.34
SHMT2P34897 MTND4LP30-201ENST00000454092 297 ntBASIC0.42□□□□□ -2.34
SHMT2P34897 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.42□□□□□ -2.34
SHMT2P34897 MIR4771-2-201ENST00000577758 74 ntBASIC0.42□□□□□ -2.34
SHMT2P34897 MIR4724-201ENST00000579485 89 ntBASIC0.42□□□□□ -2.34
SHMT2P34897 MIR4771-1-201ENST00000582617 74 ntBASIC0.42□□□□□ -2.34
SHMT2P34897 AC242498.1-201ENST00000604134 111 ntBASIC0.42□□□□□ -2.34
SHMT2P34897 AL008718.3-201ENST00000610217 321 ntBASIC0.42□□□□□ -2.34
SHMT2P34897 SNORA25.1-201ENST00000362326 128 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 SNORD115-28-201ENST00000363931 81 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 Y_RNA.217-201ENST00000364214 105 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 RNU6-934P-201ENST00000365154 107 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 RNU6-662P-201ENST00000384253 104 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 Y_RNA.486-201ENST00000384398 107 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 MIR520F-201ENST00000384824 87 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 MIR215-201ENST00000384858 110 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 MIR518F-201ENST00000384973 87 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 MIR520H-201ENST00000385126 88 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 MIR140-201ENST00000385282 100 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 RNU6-938P-201ENST00000411285 103 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 RPL21P38-201ENST00000418090 167 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 ELOCP20-201ENST00000422460 345 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 RNU7-62P-201ENST00000458856 62 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 Y_RNA.641-201ENST00000459414 105 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 AC107297.1-201ENST00000459991 176 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 MTCO2P24-201ENST00000515611 426 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 SNORA18.4-201ENST00000516440 124 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 MIR4662B-201ENST00000579498 81 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 AL355297.3-201ENST00000604082 446 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 uc_338.6-201ENST00000613544 171 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 AL160413.1-201ENST00000622780 310 ntBASIC0.41□□□□□ -2.34
SHMT2P34897 Y_RNA.276-201ENST00000364732 109 ntBASIC0.4□□□□□ -2.35
SHMT2P34897 RNU6-326P-201ENST00000365480 107 ntBASIC0.4□□□□□ -2.35
SHMT2P34897 Y_RNA.380-201ENST00000365663 111 ntBASIC0.4□□□□□ -2.35
SHMT2P34897 RNU6-514P-201ENST00000384208 107 ntBASIC0.4□□□□□ -2.35
SHMT2P34897 MIR489-201ENST00000384923 84 ntBASIC0.4□□□□□ -2.35
SHMT2P34897 MIR526A2-201ENST00000390198 65 ntBASIC0.4□□□□□ -2.35
SHMT2P34897 RNU6-913P-201ENST00000390913 95 ntBASIC0.4□□□□□ -2.35
SHMT2P34897 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.4□□□□□ -2.35
SHMT2P34897 AC087499.4-201ENST00000448505 178 ntBASIC0.4□□□□□ -2.35
SHMT2P34897 RNU7-73P-201ENST00000458743 63 ntBASIC0.4□□□□□ -2.35
SHMT2P34897 RNU7-67P-201ENST00000459003 62 ntBASIC0.4□□□□□ -2.35
SHMT2P34897 Y_RNA.631-201ENST00000459607 101 ntBASIC0.4□□□□□ -2.35
SHMT2P34897 RNU6-977P-201ENST00000516411 103 ntBASIC0.4□□□□□ -2.35
SHMT2P34897 SNORA40.15-201ENST00000516884 107 ntBASIC0.4□□□□□ -2.35
SHMT2P34897 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.4□□□□□ -2.35
SHMT2P34897 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.4□□□□□ -2.35
SHMT2P34897 AC243829.6-201ENST00000612652 106 ntBASIC0.4□□□□□ -2.35
SHMT2P34897 Y_RNA.214-201ENST00000364201 112 ntBASIC0.39□□□□□ -2.35
SHMT2P34897 Y_RNA.293-201ENST00000364908 93 ntBASIC0.39□□□□□ -2.35
SHMT2P34897 SNORA50A-201ENST00000384225 134 ntBASIC0.39□□□□□ -2.35
SHMT2P34897 SNORA53-201ENST00000391141 249 ntBASIC0.39□□□□□ -2.35
SHMT2P34897 RNA5SP193-201ENST00000410353 107 ntBASIC0.39□□□□□ -2.35
SHMT2P34897 MTCO2P12-201ENST00000427426 682 ntBASIC0.39□□□□□ -2.35
SHMT2P34897 RN7SKP12-201ENST00000516275 143 ntBASIC0.39□□□□□ -2.35
SHMT2P34897 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC0.39□□□□□ -2.35
SHMT2P34897 MIR4804-201ENST00000581683 73 ntBASIC0.39□□□□□ -2.35
SHMT2P34897 MIR4676-201ENST00000583078 72 ntBASIC0.39□□□□□ -2.35
SHMT2P34897 AC020891.4-201ENST00000605745 93 ntBASIC0.39□□□□□ -2.35
SHMT2P34897 MIR6740-201ENST00000618268 113 ntBASIC0.39□□□□□ -2.35
SHMT2P34897 Z97988.1-201ENST00000637697 135 ntBASIC0.39□□□□□ -2.35
SHMT2P34897 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.39□□□□□ -2.35
SHMT2P34897 AL589743.1-201ENST00000551932 2712 ntBASIC0.39□□□□□ -2.35
SHMT2P34897 Y_RNA.26-201ENST00000362539 101 ntBASIC0.38□□□□□ -2.35
SHMT2P34897 Y_RNA.37-201ENST00000362606 108 ntBASIC0.38□□□□□ -2.35
SHMT2P34897 RNU4-10P-201ENST00000364383 140 ntBASIC0.38□□□□□ -2.35
SHMT2P34897 RNU6-806P-201ENST00000365147 105 ntBASIC0.38□□□□□ -2.35
SHMT2P34897 SNORD24-201ENST00000383884 75 ntBASIC0.38□□□□□ -2.35
SHMT2P34897 SNORA40.5-201ENST00000391061 128 ntBASIC0.38□□□□□ -2.35
SHMT2P34897 RNU6-958P-201ENST00000516995 106 ntBASIC0.38□□□□□ -2.35
SHMT2P34897 RNU6-988P-201ENST00000519081 107 ntBASIC0.38□□□□□ -2.35
SHMT2P34897 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.38□□□□□ -2.35
SHMT2P34897 AC131281.1-201ENST00000522984 164 ntBASIC0.38□□□□□ -2.35
SHMT2P34897 AC037487.3-201ENST00000606668 112 ntBASIC0.38□□□□□ -2.35
SHMT2P34897 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.38□□□□□ -2.35
SHMT2P34897 MIR18A-201ENST00000362310 71 ntBASIC0.37□□□□□ -2.35
SHMT2P34897 Y_RNA.16-201ENST00000362421 102 ntBASIC0.37□□□□□ -2.35
SHMT2P34897 Y_RNA.19-201ENST00000362462 99 ntBASIC0.37□□□□□ -2.35
SHMT2P34897 RNU6-770P-201ENST00000363929 105 ntBASIC0.37□□□□□ -2.35
SHMT2P34897 SNORA63C-201ENST00000364578 129 ntBASIC0.37□□□□□ -2.35
SHMT2P34897 SNORA22B-201ENST00000383876 138 ntBASIC0.37□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 217.1 ms