Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RNU6-287P-201ENST00000516230 98 ntBASIC-2.35□□□□□ -2.79
CCDC88BA6NC98 MIR3941-201ENST00000582572 103 ntBASIC-2.35□□□□□ -2.79
CCDC88BA6NC98 AC008507.4-201ENST00000585464 127 ntBASIC-2.35□□□□□ -2.79
CCDC88BA6NC98 AC092807.2-201ENST00000609367 243 ntBASIC-2.35□□□□□ -2.79
CCDC88BA6NC98 Y_RNA.352-201ENST00000365439 102 ntBASIC-2.36□□□□□ -2.79
CCDC88BA6NC98 RNU6-468P-201ENST00000384003 109 ntBASIC-2.36□□□□□ -2.79
CCDC88BA6NC98 Y_RNA.426-201ENST00000384068 113 ntBASIC-2.36□□□□□ -2.79
CCDC88BA6NC98 RNU6-1127P-201ENST00000384580 107 ntBASIC-2.36□□□□□ -2.79
CCDC88BA6NC98 MIR652-201ENST00000385278 98 ntBASIC-2.36□□□□□ -2.79
CCDC88BA6NC98 DLGAP5P1-201ENST00000430307 464 ntBASIC-2.36□□□□□ -2.79
CCDC88BA6NC98 Y_RNA.653-201ENST00000459091 95 ntBASIC-2.36□□□□□ -2.79
CCDC88BA6NC98 AL137161.1-201ENST00000532231 390 ntBASIC-2.36□□□□□ -2.79
CCDC88BA6NC98 RNU6-412P-201ENST00000516434 106 ntBASIC-2.37□□□□□ -2.79
CCDC88BA6NC98 Y_RNA.802-201ENST00000614892 130 ntBASIC-2.37□□□□□ -2.79
CCDC88BA6NC98 MIR6717-201ENST00000622747 73 ntBASIC-2.37□□□□□ -2.79
CCDC88BA6NC98 Y_RNA.117-201ENST00000363294 101 ntBASIC-2.38□□□□□ -2.79
CCDC88BA6NC98 SNORD115-32-201ENST00000364079 82 ntBASIC-2.38□□□□□ -2.79
CCDC88BA6NC98 SNORA69-201ENST00000383895 132 ntBASIC-2.38□□□□□ -2.79
CCDC88BA6NC98 RNU6-456P-201ENST00000384493 107 ntBASIC-2.38□□□□□ -2.79
CCDC88BA6NC98 SNORA49-201ENST00000386157 136 ntBASIC-2.38□□□□□ -2.79
CCDC88BA6NC98 MIR548I3-201ENST00000408378 149 ntBASIC-2.38□□□□□ -2.79
CCDC88BA6NC98 AC023449.1-201ENST00000454464 154 ntBASIC-2.38□□□□□ -2.79
CCDC88BA6NC98 RNU7-138P-201ENST00000459479 64 ntBASIC-2.38□□□□□ -2.79
CCDC88BA6NC98 CLPTM1LP1-201ENST00000604519 484 ntBASIC-2.38□□□□□ -2.79
CCDC88BA6NC98 AC091912.2-201ENST00000624798 167 ntBASIC-2.38□□□□□ -2.79
CCDC88BA6NC98 MIR335-201ENST00000362173 94 ntBASIC-2.39□□□□□ -2.79
CCDC88BA6NC98 RNU6-1209P-201ENST00000363655 107 ntBASIC-2.39□□□□□ -2.79
CCDC88BA6NC98 RNU6-449P-201ENST00000383914 107 ntBASIC-2.39□□□□□ -2.79
CCDC88BA6NC98 RNU6-809P-201ENST00000384461 107 ntBASIC-2.39□□□□□ -2.79
CCDC88BA6NC98 AL603910.2-201ENST00000407268 136 ntBASIC-2.39□□□□□ -2.79
CCDC88BA6NC98 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC-2.39□□□□□ -2.79
CCDC88BA6NC98 CEP57L1P1-201ENST00000430943 1201 ntBASIC-2.39□□□□□ -2.79
CCDC88BA6NC98 AC093423.1-201ENST00000440817 142 ntBASIC-2.39□□□□□ -2.79
CCDC88BA6NC98 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC-2.39□□□□□ -2.79
CCDC88BA6NC98 RNU6-1220P-201ENST00000517126 108 ntBASIC-2.39□□□□□ -2.79
CCDC88BA6NC98 PIGPP4-201ENST00000584447 307 ntBASIC-2.39□□□□□ -2.79
CCDC88BA6NC98 AL121655.1-201ENST00000605811 308 ntBASIC-2.39□□□□□ -2.79
CCDC88BA6NC98 PART1_1.1-201ENST00000611761 217 ntBASIC-2.39□□□□□ -2.79
CCDC88BA6NC98 SNORA2.1-201ENST00000363089 137 ntBASIC-2.39□□□□□ -2.79
CCDC88BA6NC98 SNORA72.3-201ENST00000365074 132 ntBASIC-2.39□□□□□ -2.79
CCDC88BA6NC98 RNU6-880P-201ENST00000384526 107 ntBASIC-2.39□□□□□ -2.79
CCDC88BA6NC98 MIR519E-201ENST00000385075 84 ntBASIC-2.39□□□□□ -2.79
CCDC88BA6NC98 SCARNA24.1-201ENST00000516465 137 ntBASIC-2.39□□□□□ -2.79
CCDC88BA6NC98 Y_RNA.145-201ENST00000363527 102 ntBASIC-2.4□□□□□ -2.79
CCDC88BA6NC98 RNU6-1029P-201ENST00000384109 107 ntBASIC-2.4□□□□□ -2.79
CCDC88BA6NC98 RNU6-606P-201ENST00000384721 111 ntBASIC-2.4□□□□□ -2.79
CCDC88BA6NC98 RNU6-466P-201ENST00000391224 103 ntBASIC-2.4□□□□□ -2.79
CCDC88BA6NC98 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC-2.4□□□□□ -2.79
CCDC88BA6NC98 SCOCP1-201ENST00000554676 349 ntBASIC-2.4□□□□□ -2.79
CCDC88BA6NC98 MIR4775-201ENST00000581168 75 ntBASIC-2.4□□□□□ -2.79
CCDC88BA6NC98 AC087752.4-201ENST00000605911 462 ntBASIC-2.4□□□□□ -2.79
CCDC88BA6NC98 MIR342-201ENST00000362212 99 ntBASIC-2.41□□□□□ -2.8
CCDC88BA6NC98 RNU6-704P-201ENST00000364162 103 ntBASIC-2.41□□□□□ -2.8
CCDC88BA6NC98 RNY1P13-201ENST00000365030 105 ntBASIC-2.41□□□□□ -2.8
CCDC88BA6NC98 Y_RNA.403-201ENST00000383977 101 ntBASIC-2.41□□□□□ -2.8
CCDC88BA6NC98 AC116353.3-201ENST00000511215 249 ntBASIC-2.41□□□□□ -2.8
CCDC88BA6NC98 Y_RNA.679-201ENST00000516416 91 ntBASIC-2.41□□□□□ -2.8
CCDC88BA6NC98 MTND5P40-201ENST00000559945 246 ntBASIC-2.41□□□□□ -2.8
CCDC88BA6NC98 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC-2.41□□□□□ -2.8
CCDC88BA6NC98 AC087683.2-201ENST00000611384 326 ntBASIC-2.41□□□□□ -2.8
CCDC88BA6NC98 AL163152.1-201ENST00000642001 374 ntBASIC-2.41□□□□□ -2.8
CCDC88BA6NC98 RNU6-653P-201ENST00000363074 106 ntBASIC-2.42□□□□□ -2.8
CCDC88BA6NC98 RNU5B-4P-201ENST00000363508 111 ntBASIC-2.42□□□□□ -2.8
CCDC88BA6NC98 RNU6-281P-201ENST00000384212 103 ntBASIC-2.42□□□□□ -2.8
CCDC88BA6NC98 MIR548O-201ENST00000408583 114 ntBASIC-2.42□□□□□ -2.8
CCDC88BA6NC98 MTCO3P23-201ENST00000561363 289 ntBASIC-2.42□□□□□ -2.8
CCDC88BA6NC98 DISC2.1-201ENST00000612827 205 ntBASIC-2.42□□□□□ -2.8
CCDC88BA6NC98 Y_RNA.634-201ENST00000364811 113 ntBASIC-2.43□□□□□ -2.8
CCDC88BA6NC98 Y_RNA.785-201ENST00000384290 109 ntBASIC-2.43□□□□□ -2.8
CCDC88BA6NC98 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC-2.43□□□□□ -2.8
CCDC88BA6NC98 RNU7-167P-201ENST00000459160 62 ntBASIC-2.43□□□□□ -2.8
CCDC88BA6NC98 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-2.43□□□□□ -2.8
CCDC88BA6NC98 U6.109-201ENST00000636749 87 ntBASIC-2.43□□□□□ -2.8
CCDC88BA6NC98 Y_RNA.242-201ENST00000364473 110 ntBASIC-2.44□□□□□ -2.8
CCDC88BA6NC98 RNU6-1130P-201ENST00000365434 107 ntBASIC-2.44□□□□□ -2.8
CCDC88BA6NC98 RNU6-601P-201ENST00000384540 107 ntBASIC-2.44□□□□□ -2.8
CCDC88BA6NC98 RNU7-45P-201ENST00000459460 63 ntBASIC-2.44□□□□□ -2.8
CCDC88BA6NC98 RNU6-1012P-201ENST00000516606 109 ntBASIC-2.44□□□□□ -2.8
CCDC88BA6NC98 RNU7-10P-201ENST00000607194 63 ntBASIC-2.44□□□□□ -2.8
CCDC88BA6NC98 MIR6874-201ENST00000635894 71 ntBASIC-2.44□□□□□ -2.8
CCDC88BA6NC98 AC006927.2-201ENST00000639256 389 ntBASIC-2.44□□□□□ -2.8
CCDC88BA6NC98 Y_RNA.119-201ENST00000363301 96 ntBASIC-2.45□□□□□ -2.8
CCDC88BA6NC98 MIR617-201ENST00000385030 97 ntBASIC-2.45□□□□□ -2.8
CCDC88BA6NC98 MTND2P3-201ENST00000452458 470 ntBASIC-2.45□□□□□ -2.8
CCDC88BA6NC98 SNORD2-201ENST00000459163 69 ntBASIC-2.45□□□□□ -2.8
CCDC88BA6NC98 TRAJ51-201ENST00000504127 63 ntBASIC-2.45□□□□□ -2.8
CCDC88BA6NC98 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC-2.45□□□□□ -2.8
CCDC88BA6NC98 U2.17-201ENST00000611454 95 ntBASIC-2.45□□□□□ -2.8
CCDC88BA6NC98 U4.1-201ENST00000620349 87 ntBASIC-2.45□□□□□ -2.8
CCDC88BA6NC98 SEPT14P19-203ENST00000633205 211 ntBASIC-2.45□□□□□ -2.8
CCDC88BA6NC98 MIR3674-201ENST00000636576 68 ntBASIC-2.45□□□□□ -2.8
CCDC88BA6NC98 SNORD50.1-201ENST00000362987 71 ntBASIC-2.45□□□□□ -2.8
CCDC88BA6NC98 snoU2_19.2-201ENST00000363024 80 ntBASIC-2.45□□□□□ -2.8
CCDC88BA6NC98 Y_RNA.399-201ENST00000383955 105 ntBASIC-2.45□□□□□ -2.8
CCDC88BA6NC98 RNU6-831P-201ENST00000384548 107 ntBASIC-2.45□□□□□ -2.8
CCDC88BA6NC98 RNU6-192P-201ENST00000391253 100 ntBASIC-2.45□□□□□ -2.8
CCDC88BA6NC98 SNORA26.6-201ENST00000391256 115 ntBASIC-2.45□□□□□ -2.8
CCDC88BA6NC98 MTCO2P16-201ENST00000436962 677 ntBASIC-2.45□□□□□ -2.8
CCDC88BA6NC98 AC112204.1-201ENST00000502591 103 ntBASIC-2.45□□□□□ -2.8
CCDC88BA6NC98 RNU6-1247P-201ENST00000516622 98 ntBASIC-2.45□□□□□ -2.8
Retrieved 100 of 98,524 protein–RNA pairs in 249.8 ms