Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.98□□□□□ -2.25
LIME1Q9H400 MIR4724-201ENST00000579485 89 ntBASIC0.98□□□□□ -2.25
LIME1Q9H400 MIR4282-201ENST00000583613 67 ntBASIC0.98□□□□□ -2.25
LIME1Q9H400 uc_338.4-201ENST00000616635 176 ntBASIC0.98□□□□□ -2.25
LIME1Q9H400 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.98□□□□□ -2.25
LIME1Q9H400 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.98□□□□□ -2.25
LIME1Q9H400 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.98□□□□□ -2.25
LIME1Q9H400 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
LIME1Q9H400 Y_RNA.149-201ENST00000363558 117 ntBASIC0.97□□□□□ -2.25
LIME1Q9H400 Y_RNA.396-201ENST00000383949 103 ntBASIC0.97□□□□□ -2.25
LIME1Q9H400 MIR1302-6-201ENST00000408466 90 ntBASIC0.97□□□□□ -2.25
LIME1Q9H400 MIR1285-1-201ENST00000408593 84 ntBASIC0.97□□□□□ -2.25
LIME1Q9H400 SNORD79.1-201ENST00000516069 84 ntBASIC0.97□□□□□ -2.25
LIME1Q9H400 PRELID3BP2-201ENST00000605362 201 ntBASIC0.97□□□□□ -2.25
LIME1Q9H400 Y_RNA.802-201ENST00000614892 130 ntBASIC0.97□□□□□ -2.25
LIME1Q9H400 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.97□□□□□ -2.25
LIME1Q9H400 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC0.97□□□□□ -2.25
LIME1Q9H400 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.96□□□□□ -2.26
LIME1Q9H400 MIR373-201ENST00000362273 69 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 Y_RNA.14-201ENST00000362415 103 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 Y_RNA.47-201ENST00000362697 108 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 Y_RNA.117-201ENST00000363294 101 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 RNU6-1309P-201ENST00000363305 108 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 RNU6-238P-201ENST00000363313 106 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 RNU1-124P-201ENST00000363861 145 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 RNA5SP48-201ENST00000363969 126 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 MIR19B1-201ENST00000384829 87 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 MIR618-201ENST00000385287 98 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 RNU6-910P-201ENST00000390844 107 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.96□□□□□ -2.26
LIME1Q9H400 AL591704.2-201ENST00000421658 181 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 MTCYBP9-201ENST00000431021 303 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 RNU6-1132P-201ENST00000459214 107 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 RPS26P48-201ENST00000491713 339 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 RNU7-41P-201ENST00000515917 61 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 RNU4-57P-201ENST00000515980 135 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 RN7SKP164-201ENST00000516138 266 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 RNU7-149P-201ENST00000516739 59 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 SNORA18.7-201ENST00000516910 131 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 MIR5000-201ENST00000577717 103 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 MIR4764-201ENST00000580680 88 ntBASIC0.96□□□□□ -2.26
LIME1Q9H400 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC0.95□□□□□ -2.26
LIME1Q9H400 Y_RNA.352-201ENST00000365439 102 ntBASIC0.95□□□□□ -2.26
LIME1Q9H400 SNORA70.7-201ENST00000384159 133 ntBASIC0.95□□□□□ -2.26
LIME1Q9H400 Y_RNA.459-201ENST00000384251 102 ntBASIC0.95□□□□□ -2.26
LIME1Q9H400 SNORA8.3-201ENST00000384679 139 ntBASIC0.95□□□□□ -2.26
LIME1Q9H400 Y_RNA.562-201ENST00000384695 113 ntBASIC0.95□□□□□ -2.26
LIME1Q9H400 MIR802-201ENST00000390235 94 ntBASIC0.95□□□□□ -2.26
LIME1Q9H400 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.95□□□□□ -2.26
LIME1Q9H400 MTND2P23-201ENST00000422990 651 ntBASIC0.95□□□□□ -2.26
LIME1Q9H400 RNU6-327P-201ENST00000516270 127 ntBASIC0.95□□□□□ -2.26
LIME1Q9H400 SNORA70.22-201ENST00000517160 124 ntBASIC0.95□□□□□ -2.26
LIME1Q9H400 Pinc.1-201ENST00000616452 154 ntBASIC0.95□□□□□ -2.26
LIME1Q9H400 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.95□□□□□ -2.26
LIME1Q9H400 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
LIME1Q9H400 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.94□□□□□ -2.26
LIME1Q9H400 Y_RNA.293-201ENST00000364908 93 ntBASIC0.94□□□□□ -2.26
LIME1Q9H400 Y_RNA.304-201ENST00000365011 112 ntBASIC0.94□□□□□ -2.26
LIME1Q9H400 RNY1P4-201ENST00000384595 115 ntBASIC0.94□□□□□ -2.26
LIME1Q9H400 MIR520C-201ENST00000385005 87 ntBASIC0.94□□□□□ -2.26
LIME1Q9H400 MIR626-201ENST00000385032 94 ntBASIC0.94□□□□□ -2.26
LIME1Q9H400 RNU6-651P-201ENST00000411040 105 ntBASIC0.94□□□□□ -2.26
LIME1Q9H400 Y_RNA.668-201ENST00000516233 93 ntBASIC0.94□□□□□ -2.26
LIME1Q9H400 RNU6-947P-201ENST00000516264 106 ntBASIC0.94□□□□□ -2.26
LIME1Q9H400 RNA5SP404-201ENST00000517118 132 ntBASIC0.94□□□□□ -2.26
LIME1Q9H400 MIR4662B-201ENST00000579498 81 ntBASIC0.94□□□□□ -2.26
LIME1Q9H400 BX284668.6-201ENST00000606899 438 ntBASIC0.94□□□□□ -2.26
LIME1Q9H400 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.94□□□□□ -2.26
LIME1Q9H400 AC008133.2-201ENST00000624540 351 ntBASIC0.94□□□□□ -2.26
LIME1Q9H400 Y_RNA.229-201ENST00000364347 113 ntBASIC0.93□□□□□ -2.26
LIME1Q9H400 RNU4-10P-201ENST00000364383 140 ntBASIC0.93□□□□□ -2.26
LIME1Q9H400 SNORD28B-201ENST00000390993 75 ntBASIC0.93□□□□□ -2.26
LIME1Q9H400 SNORA75.2-201ENST00000391138 150 ntBASIC0.93□□□□□ -2.26
LIME1Q9H400 SNORA75.3-201ENST00000391231 150 ntBASIC0.93□□□□□ -2.26
LIME1Q9H400 AC023449.1-201ENST00000454464 154 ntBASIC0.93□□□□□ -2.26
LIME1Q9H400 RNU6-1045P-201ENST00000516321 107 ntBASIC0.93□□□□□ -2.26
LIME1Q9H400 MIR548AR-201ENST00000582191 57 ntBASIC0.93□□□□□ -2.26
LIME1Q9H400 AC012433.1-201ENST00000588916 398 ntBASIC0.93□□□□□ -2.26
LIME1Q9H400 AC006006.1-201ENST00000603082 144 ntBASIC0.93□□□□□ -2.26
LIME1Q9H400 AL049861.1-201ENST00000603130 150 ntBASIC0.93□□□□□ -2.26
LIME1Q9H400 AC011921.3-201ENST00000605540 361 ntBASIC0.93□□□□□ -2.26
LIME1Q9H400 RNA5SP264-201ENST00000363115 107 ntBASIC0.92□□□□□ -2.26
LIME1Q9H400 SNORA80D-201ENST00000384488 135 ntBASIC0.92□□□□□ -2.26
LIME1Q9H400 Y_RNA.556-201ENST00000384677 113 ntBASIC0.92□□□□□ -2.26
LIME1Q9H400 MIR568-201ENST00000385036 95 ntBASIC0.92□□□□□ -2.26
LIME1Q9H400 Y_RNA.587-201ENST00000391210 103 ntBASIC0.92□□□□□ -2.26
LIME1Q9H400 MIR1185-1-201ENST00000408598 86 ntBASIC0.92□□□□□ -2.26
LIME1Q9H400 AC063976.4-201ENST00000421971 163 ntBASIC0.92□□□□□ -2.26
LIME1Q9H400 SNORD127-201ENST00000458892 86 ntBASIC0.92□□□□□ -2.26
LIME1Q9H400 RNU7-21P-201ENST00000459430 62 ntBASIC0.92□□□□□ -2.26
LIME1Q9H400 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.92□□□□□ -2.26
LIME1Q9H400 RNU2-13P-201ENST00000515909 113 ntBASIC0.92□□□□□ -2.26
LIME1Q9H400 RNU7-40P-201ENST00000516397 64 ntBASIC0.92□□□□□ -2.26
LIME1Q9H400 RNU6-126P-201ENST00000516685 103 ntBASIC0.92□□□□□ -2.26
LIME1Q9H400 MIR3973-201ENST00000579824 107 ntBASIC0.92□□□□□ -2.26
LIME1Q9H400 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.92□□□□□ -2.26
LIME1Q9H400 AC015726.2-201ENST00000620112 122 ntBASIC0.92□□□□□ -2.26
LIME1Q9H400 AC099654.10-201ENST00000640395 161 ntBASIC0.92□□□□□ -2.26
LIME1Q9H400 Y_RNA.30-201ENST00000362572 97 ntBASIC0.91□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 218.1 ms