Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 SNORA24-201ENST00000384096 131 ntBASIC0.42□□□□□ -2.34
CCDC40Q4G0X9 Y_RNA.494-201ENST00000384432 111 ntBASIC0.42□□□□□ -2.34
CCDC40Q4G0X9 Y_RNA.579-201ENST00000390939 94 ntBASIC0.42□□□□□ -2.34
CCDC40Q4G0X9 MIR936-201ENST00000401264 98 ntBASIC0.42□□□□□ -2.34
CCDC40Q4G0X9 MIR1302-11-201ENST00000408051 138 ntBASIC0.42□□□□□ -2.34
CCDC40Q4G0X9 MIR1302-9-201ENST00000408365 138 ntBASIC0.42□□□□□ -2.34
CCDC40Q4G0X9 MIR1302-10-201ENST00000408734 138 ntBASIC0.42□□□□□ -2.34
CCDC40Q4G0X9 AC244023.1-201ENST00000426884 112 ntBASIC0.42□□□□□ -2.34
CCDC40Q4G0X9 AC023449.1-201ENST00000454464 154 ntBASIC0.42□□□□□ -2.34
CCDC40Q4G0X9 AC107297.1-201ENST00000459991 176 ntBASIC0.42□□□□□ -2.34
CCDC40Q4G0X9 RNU7-149P-201ENST00000516739 59 ntBASIC0.42□□□□□ -2.34
CCDC40Q4G0X9 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.42□□□□□ -2.34
CCDC40Q4G0X9 AC242498.1-201ENST00000604134 111 ntBASIC0.42□□□□□ -2.34
CCDC40Q4G0X9 MIR1302-2-201ENST00000607096 138 ntBASIC0.42□□□□□ -2.34
CCDC40Q4G0X9 MIR18A-201ENST00000362310 71 ntBASIC0.41□□□□□ -2.34
CCDC40Q4G0X9 Y_RNA.136-201ENST00000363444 102 ntBASIC0.41□□□□□ -2.34
CCDC40Q4G0X9 RNU6-102P-201ENST00000384485 104 ntBASIC0.41□□□□□ -2.34
CCDC40Q4G0X9 MIR598-201ENST00000384868 97 ntBASIC0.41□□□□□ -2.34
CCDC40Q4G0X9 MIR489-201ENST00000384923 84 ntBASIC0.41□□□□□ -2.34
CCDC40Q4G0X9 RNU6-383P-201ENST00000410864 94 ntBASIC0.41□□□□□ -2.34
CCDC40Q4G0X9 MTCO2P12-201ENST00000427426 682 ntBASIC0.41□□□□□ -2.34
CCDC40Q4G0X9 SNORA68.3-201ENST00000515906 83 ntBASIC0.41□□□□□ -2.34
CCDC40Q4G0X9 RNU6-507P-201ENST00000516045 100 ntBASIC0.41□□□□□ -2.34
CCDC40Q4G0X9 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.41□□□□□ -2.34
CCDC40Q4G0X9 MIR4804-201ENST00000581683 73 ntBASIC0.41□□□□□ -2.34
CCDC40Q4G0X9 AL021707.8-201ENST00000609428 183 ntBASIC0.41□□□□□ -2.34
CCDC40Q4G0X9 SNORD115-34-201ENST00000362441 82 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-12-201ENST00000362583 82 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-29-201ENST00000362834 82 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-9-201ENST00000362912 82 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-21-201ENST00000362963 81 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-14-201ENST00000363090 81 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 Y_RNA.112-201ENST00000363250 102 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-13-201ENST00000363358 82 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-41-201ENST00000363608 82 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-11-201ENST00000363616 82 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-5-201ENST00000363633 82 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-39-201ENST00000363694 82 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-4-201ENST00000363810 82 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-16-201ENST00000363887 82 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-6-201ENST00000363942 82 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-42-201ENST00000364273 82 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 Y_RNA.241-201ENST00000364470 117 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-15-201ENST00000364809 81 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-1-201ENST00000364961 82 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-26-201ENST00000365067 82 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-10-201ENST00000365073 81 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-43-201ENST00000365503 82 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-36-201ENST00000365629 82 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 Y_RNA.602-201ENST00000410535 92 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 HSPE1P25-201ENST00000455484 251 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 RNU7-67P-201ENST00000459003 62 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 AC091959.1-201ENST00000495857 238 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 AC082651.2-201ENST00000496833 166 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 RNU6-496P-201ENST00000516145 99 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 Y_RNA.666-201ENST00000516187 112 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 MIR4711-201ENST00000578274 70 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 MIR3612-201ENST00000579753 87 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 MIR4676-201ENST00000583078 72 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 C8orf59P2-201ENST00000603441 271 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 AC020891.4-201ENST00000605745 93 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-40-201ENST00000606510 82 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 MIR376A1-201ENST00000616574 68 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 AC134878.1-201ENST00000619901 243 ntBASIC0.4□□□□□ -2.35
CCDC40Q4G0X9 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.39□□□□□ -2.35
CCDC40Q4G0X9 SNORA50A-201ENST00000384225 134 ntBASIC0.39□□□□□ -2.35
CCDC40Q4G0X9 RNU7-62P-201ENST00000458856 62 ntBASIC0.39□□□□□ -2.35
CCDC40Q4G0X9 Y_RNA.637-201ENST00000459424 114 ntBASIC0.39□□□□□ -2.35
CCDC40Q4G0X9 MRPS35P2-201ENST00000508242 191 ntBASIC0.39□□□□□ -2.35
CCDC40Q4G0X9 AL049861.1-201ENST00000603130 150 ntBASIC0.39□□□□□ -2.35
CCDC40Q4G0X9 AL355297.3-201ENST00000604082 446 ntBASIC0.39□□□□□ -2.35
CCDC40Q4G0X9 RNU4-45P-201ENST00000365469 141 ntBASIC0.38□□□□□ -2.35
CCDC40Q4G0X9 Y_RNA.424-201ENST00000384063 103 ntBASIC0.38□□□□□ -2.35
CCDC40Q4G0X9 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.38□□□□□ -2.35
CCDC40Q4G0X9 RNA5SP496-201ENST00000391240 109 ntBASIC0.38□□□□□ -2.35
CCDC40Q4G0X9 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.38□□□□□ -2.35
CCDC40Q4G0X9 BTF3P11-201ENST00000426582 477 ntBASIC0.38□□□□□ -2.35
CCDC40Q4G0X9 MTCO1P5-201ENST00000433573 344 ntBASIC0.38□□□□□ -2.35
CCDC40Q4G0X9 RNU6-397P-201ENST00000516226 104 ntBASIC0.38□□□□□ -2.35
CCDC40Q4G0X9 RNU6-958P-201ENST00000516995 106 ntBASIC0.38□□□□□ -2.35
CCDC40Q4G0X9 AC007751.1-201ENST00000529260 376 ntBASIC0.38□□□□□ -2.35
CCDC40Q4G0X9 AL162730.1-201ENST00000605734 292 ntBASIC0.38□□□□□ -2.35
CCDC40Q4G0X9 uc_338.6-201ENST00000613544 171 ntBASIC0.38□□□□□ -2.35
CCDC40Q4G0X9 AC013791.1-201ENST00000616619 62 ntBASIC0.38□□□□□ -2.35
CCDC40Q4G0X9 RNU6-1138P-201ENST00000365359 106 ntBASIC0.37□□□□□ -2.35
CCDC40Q4G0X9 Y_RNA.445-201ENST00000384168 102 ntBASIC0.37□□□□□ -2.35
CCDC40Q4G0X9 Y_RNA.569-201ENST00000384749 103 ntBASIC0.37□□□□□ -2.35
CCDC40Q4G0X9 SNORD115-46-201ENST00000390982 71 ntBASIC0.37□□□□□ -2.35
CCDC40Q4G0X9 RNA5SP193-201ENST00000410353 107 ntBASIC0.37□□□□□ -2.35
CCDC40Q4G0X9 MTND5P20-201ENST00000448677 143 ntBASIC0.37□□□□□ -2.35
CCDC40Q4G0X9 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC0.37□□□□□ -2.35
CCDC40Q4G0X9 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.37□□□□□ -2.35
CCDC40Q4G0X9 RNU7-56P-201ENST00000458744 62 ntBASIC0.37□□□□□ -2.35
CCDC40Q4G0X9 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.37□□□□□ -2.35
CCDC40Q4G0X9 AC243829.6-201ENST00000612652 106 ntBASIC0.37□□□□□ -2.35
CCDC40Q4G0X9 PVT1_3.1-201ENST00000620853 95 ntBASIC0.37□□□□□ -2.35
CCDC40Q4G0X9 uc_338.22-201ENST00000622722 187 ntBASIC0.37□□□□□ -2.35
CCDC40Q4G0X9 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.37□□□□□ -2.35
CCDC40Q4G0X9 MIRLET7D-201ENST00000362263 87 ntBASIC0.36□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 233.1 ms