Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 MTATP6P29-201ENST00000415057 132 ntBASIC1.41□□□□□ -2.18
LMO4P61968 HMGN2P38-201ENST00000423806 265 ntBASIC1.41□□□□□ -2.18
LMO4P61968 RNU6-126P-201ENST00000516685 103 ntBASIC1.41□□□□□ -2.18
LMO4P61968 SNORA44.1-201ENST00000517031 108 ntBASIC1.41□□□□□ -2.18
LMO4P61968 MIR3935-201ENST00000583472 104 ntBASIC1.41□□□□□ -2.18
LMO4P61968 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.41□□□□□ -2.18
LMO4P61968 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.41□□□□□ -2.18
LMO4P61968 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.41□□□□□ -2.18
LMO4P61968 SNORA1-201ENST00000384107 130 ntBASIC1.4□□□□□ -2.19
LMO4P61968 RNU6-80P-201ENST00000384195 107 ntBASIC1.4□□□□□ -2.19
LMO4P61968 Y_RNA.525-201ENST00000384570 113 ntBASIC1.4□□□□□ -2.19
LMO4P61968 MIR522-201ENST00000385071 87 ntBASIC1.4□□□□□ -2.19
LMO4P61968 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
LMO4P61968 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
LMO4P61968 SUMO2P12-201ENST00000405924 140 ntBASIC1.4□□□□□ -2.19
LMO4P61968 MLLT10P1-201ENST00000418346 262 ntBASIC1.4□□□□□ -2.19
LMO4P61968 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.4□□□□□ -2.19
LMO4P61968 RNU7-107P-201ENST00000459121 61 ntBASIC1.4□□□□□ -2.19
LMO4P61968 RNU7-94P-201ENST00000459576 63 ntBASIC1.4□□□□□ -2.19
LMO4P61968 AL049830.1-201ENST00000468034 425 ntBASIC1.4□□□□□ -2.19
LMO4P61968 RNU6-365P-201ENST00000517113 106 ntBASIC1.4□□□□□ -2.19
LMO4P61968 RNU6-1270P-201ENST00000517128 108 ntBASIC1.4□□□□□ -2.19
LMO4P61968 RNU2-60P-201ENST00000517290 128 ntBASIC1.4□□□□□ -2.19
LMO4P61968 SUB1P4-201ENST00000566062 339 ntBASIC1.4□□□□□ -2.19
LMO4P61968 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.4□□□□□ -2.19
LMO4P61968 AC131055.1-201ENST00000584626 316 ntBASIC1.4□□□□□ -2.19
LMO4P61968 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.4□□□□□ -2.19
LMO4P61968 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
LMO4P61968 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
LMO4P61968 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.39□□□□□ -2.19
LMO4P61968 RNU6-661P-201ENST00000362409 107 ntBASIC1.39□□□□□ -2.19
LMO4P61968 RNU6-235P-201ENST00000362644 107 ntBASIC1.39□□□□□ -2.19
LMO4P61968 Y_RNA.120-201ENST00000363304 110 ntBASIC1.39□□□□□ -2.19
LMO4P61968 Y_RNA.338-201ENST00000365320 114 ntBASIC1.39□□□□□ -2.19
LMO4P61968 RNU4-52P-201ENST00000384209 138 ntBASIC1.39□□□□□ -2.19
LMO4P61968 SNORD61-201ENST00000384252 73 ntBASIC1.39□□□□□ -2.19
LMO4P61968 RNA5SP109-201ENST00000391010 116 ntBASIC1.39□□□□□ -2.19
LMO4P61968 Y_RNA.629-201ENST00000411368 105 ntBASIC1.39□□□□□ -2.19
LMO4P61968 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.39□□□□□ -2.19
LMO4P61968 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.39□□□□□ -2.19
LMO4P61968 AC245047.3-201ENST00000429428 127 ntBASIC1.39□□□□□ -2.19
LMO4P61968 FTH1P12-201ENST00000432137 551 ntBASIC1.39□□□□□ -2.19
LMO4P61968 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.39□□□□□ -2.19
LMO4P61968 RNU4-57P-201ENST00000515980 135 ntBASIC1.39□□□□□ -2.19
LMO4P61968 Y_RNA.666-201ENST00000516187 112 ntBASIC1.39□□□□□ -2.19
LMO4P61968 RNU6-659P-201ENST00000516454 104 ntBASIC1.39□□□□□ -2.19
LMO4P61968 SNORA31.17-201ENST00000516953 127 ntBASIC1.39□□□□□ -2.19
LMO4P61968 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.39□□□□□ -2.19
LMO4P61968 MIR4498-201ENST00000577599 66 ntBASIC1.39□□□□□ -2.19
LMO4P61968 MIR3618-201ENST00000580330 88 ntBASIC1.39□□□□□ -2.19
LMO4P61968 MIR3129-201ENST00000581095 76 ntBASIC1.39□□□□□ -2.19
LMO4P61968 AC087685.1-201ENST00000587507 141 ntBASIC1.39□□□□□ -2.19
LMO4P61968 AL365205.2-201ENST00000594586 68 ntBASIC1.39□□□□□ -2.19
LMO4P61968 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
LMO4P61968 MIR378A-201ENST00000362177 66 ntBASIC1.38□□□□□ -2.19
LMO4P61968 Y_RNA.52-201ENST00000362760 96 ntBASIC1.38□□□□□ -2.19
LMO4P61968 RNU6-888P-201ENST00000363010 101 ntBASIC1.38□□□□□ -2.19
LMO4P61968 SNORD68-201ENST00000363214 84 ntBASIC1.38□□□□□ -2.19
LMO4P61968 RNU6-508P-201ENST00000363231 103 ntBASIC1.38□□□□□ -2.19
LMO4P61968 U8.5-201ENST00000364528 136 ntBASIC1.38□□□□□ -2.19
LMO4P61968 Y_RNA.280-201ENST00000364765 112 ntBASIC1.38□□□□□ -2.19
LMO4P61968 SNORD50B-201ENST00000364995 70 ntBASIC1.38□□□□□ -2.19
LMO4P61968 SNORD24-201ENST00000383884 75 ntBASIC1.38□□□□□ -2.19
LMO4P61968 MIR548A2-201ENST00000384956 97 ntBASIC1.38□□□□□ -2.19
LMO4P61968 MIR624-201ENST00000385217 97 ntBASIC1.38□□□□□ -2.19
LMO4P61968 RNU4-62P-201ENST00000410125 130 ntBASIC1.38□□□□□ -2.19
LMO4P61968 RNA5SP127-201ENST00000411051 133 ntBASIC1.38□□□□□ -2.19
LMO4P61968 BTF3P4-201ENST00000418852 495 ntBASIC1.38□□□□□ -2.19
LMO4P61968 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.38□□□□□ -2.19
LMO4P61968 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.38□□□□□ -2.19
LMO4P61968 RNU6-504P-201ENST00000516568 104 ntBASIC1.38□□□□□ -2.19
LMO4P61968 MIR3198-2-201ENST00000577868 80 ntBASIC1.38□□□□□ -2.19
LMO4P61968 MIR4303-201ENST00000581299 66 ntBASIC1.38□□□□□ -2.19
LMO4P61968 MIR4448-201ENST00000584360 86 ntBASIC1.38□□□□□ -2.19
LMO4P61968 MIR4762-201ENST00000585261 75 ntBASIC1.38□□□□□ -2.19
LMO4P61968 AL359881.1-201ENST00000602916 267 ntBASIC1.38□□□□□ -2.19
LMO4P61968 AC103810.8-201ENST00000607347 118 ntBASIC1.38□□□□□ -2.19
LMO4P61968 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.38□□□□□ -2.19
LMO4P61968 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.38□□□□□ -2.19
LMO4P61968 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
LMO4P61968 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.37□□□□□ -2.19
LMO4P61968 RNU6-112P-201ENST00000363599 104 ntBASIC1.37□□□□□ -2.19
LMO4P61968 Y_RNA.273-201ENST00000364703 102 ntBASIC1.37□□□□□ -2.19
LMO4P61968 MIR520A-201ENST00000384862 85 ntBASIC1.37□□□□□ -2.19
LMO4P61968 MIR518F-201ENST00000384973 87 ntBASIC1.37□□□□□ -2.19
LMO4P61968 MIR30A-201ENST00000385092 71 ntBASIC1.37□□□□□ -2.19
LMO4P61968 MIR891A-201ENST00000401237 79 ntBASIC1.37□□□□□ -2.19
LMO4P61968 RNU2-7P-201ENST00000410794 178 ntBASIC1.37□□□□□ -2.19
LMO4P61968 SNORA18.4-201ENST00000516440 124 ntBASIC1.37□□□□□ -2.19
LMO4P61968 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
LMO4P61968 Y_RNA.353-201ENST00000365440 108 ntBASIC1.36□□□□□ -2.19
LMO4P61968 SNORD20-201ENST00000384550 80 ntBASIC1.36□□□□□ -2.19
LMO4P61968 AL603914.1-201ENST00000401964 204 ntBASIC1.36□□□□□ -2.19
LMO4P61968 AC069257.2-201ENST00000441819 155 ntBASIC1.36□□□□□ -2.19
LMO4P61968 SNRPGP13-201ENST00000442212 177 ntBASIC1.36□□□□□ -2.19
LMO4P61968 STAG3L5P-204ENST00000443759 179 ntBASIC1.36□□□□□ -2.19
LMO4P61968 AC008834.1-201ENST00000511612 175 ntBASIC1.36□□□□□ -2.19
LMO4P61968 RNU6-693P-201ENST00000516134 107 ntBASIC1.36□□□□□ -2.19
LMO4P61968 SNORA31.10-201ENST00000516482 106 ntBASIC1.36□□□□□ -2.19
LMO4P61968 Y_RNA.690-201ENST00000516603 95 ntBASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 212.7 ms