Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MTATP6P26-201ENST00000445926 662 ntBASIC0.16□□□□□ -2.38
SHANK3Q9BYB0 RN7SKP12-201ENST00000516275 143 ntBASIC0.16□□□□□ -2.38
SHANK3Q9BYB0 AC012433.1-201ENST00000588916 398 ntBASIC0.16□□□□□ -2.38
SHANK3Q9BYB0 AL355297.3-201ENST00000604082 446 ntBASIC0.16□□□□□ -2.38
SHANK3Q9BYB0 AC133104.2-201ENST00000615272 193 ntBASIC0.16□□□□□ -2.38
SHANK3Q9BYB0 Y_RNA.88-201ENST00000363029 99 ntBASIC0.15□□□□□ -2.39
SHANK3Q9BYB0 RNU6-268P-201ENST00000364174 107 ntBASIC0.15□□□□□ -2.39
SHANK3Q9BYB0 SNORD38B-201ENST00000384690 67 ntBASIC0.15□□□□□ -2.39
SHANK3Q9BYB0 HMGN2P22-201ENST00000427588 175 ntBASIC0.15□□□□□ -2.39
SHANK3Q9BYB0 MTND1P2-201ENST00000430604 821 ntBASIC0.15□□□□□ -2.39
SHANK3Q9BYB0 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.15□□□□□ -2.39
SHANK3Q9BYB0 CHEK2P4-201ENST00000450340 246 ntBASIC0.15□□□□□ -2.39
SHANK3Q9BYB0 MIR18B-201ENST00000454574 71 ntBASIC0.15□□□□□ -2.39
SHANK3Q9BYB0 RNU2-13P-201ENST00000515909 113 ntBASIC0.15□□□□□ -2.39
SHANK3Q9BYB0 AL162730.1-201ENST00000605734 292 ntBASIC0.15□□□□□ -2.39
SHANK3Q9BYB0 MIR4791-201ENST00000607666 84 ntBASIC0.15□□□□□ -2.39
SHANK3Q9BYB0 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC0.15□□□□□ -2.39
SHANK3Q9BYB0 AC015726.2-201ENST00000620112 122 ntBASIC0.15□□□□□ -2.39
SHANK3Q9BYB0 AC092634.7-201ENST00000621022 103 ntBASIC0.15□□□□□ -2.39
SHANK3Q9BYB0 SNORD38B-202ENST00000625943 69 ntBASIC0.15□□□□□ -2.39
SHANK3Q9BYB0 Y_RNA.3-201ENST00000362331 103 ntBASIC0.14□□□□□ -2.39
SHANK3Q9BYB0 Y_RNA.146-201ENST00000363549 102 ntBASIC0.14□□□□□ -2.39
SHANK3Q9BYB0 Y_RNA.318-201ENST00000365131 97 ntBASIC0.14□□□□□ -2.39
SHANK3Q9BYB0 Y_RNA.376-201ENST00000365638 108 ntBASIC0.14□□□□□ -2.39
SHANK3Q9BYB0 RNU6-364P-201ENST00000384387 107 ntBASIC0.14□□□□□ -2.39
SHANK3Q9BYB0 SNORD28B-201ENST00000390993 75 ntBASIC0.14□□□□□ -2.39
SHANK3Q9BYB0 Y_RNA.605-201ENST00000410577 105 ntBASIC0.14□□□□□ -2.39
SHANK3Q9BYB0 MCFD2P1-201ENST00000417812 300 ntBASIC0.14□□□□□ -2.39
SHANK3Q9BYB0 MTND1P34-201ENST00000438556 671 ntBASIC0.14□□□□□ -2.39
SHANK3Q9BYB0 snoU13.21-201ENST00000459368 105 ntBASIC0.14□□□□□ -2.39
SHANK3Q9BYB0 AC022523.2-201ENST00000561045 150 ntBASIC0.14□□□□□ -2.39
SHANK3Q9BYB0 TPTEP1-208ENST00000636884 213 ntBASIC0.14□□□□□ -2.39
SHANK3Q9BYB0 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.14□□□□□ -2.39
SHANK3Q9BYB0 Y_RNA.6-201ENST00000362350 114 ntBASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 RNU6-369P-201ENST00000362515 102 ntBASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 Y_RNA.72-201ENST00000362894 103 ntBASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 RNU6-1175P-201ENST00000365200 107 ntBASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 RNU6-855P-201ENST00000410395 104 ntBASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 AC099799.1-201ENST00000439809 192 ntBASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 MTCO3P10-201ENST00000455912 772 ntBASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 RNU6-1170P-201ENST00000515974 106 ntBASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 RNU7-4P-201ENST00000516961 62 ntBASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 MTND1P7-201ENST00000632801 297 ntBASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 Y_RNA.86-201ENST00000363020 111 ntBASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 RNU6-1099P-201ENST00000363533 107 ntBASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 Y_RNA.314-201ENST00000365114 102 ntBASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 Y_RNA.592-201ENST00000410274 109 ntBASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 RNU7-169P-201ENST00000459456 61 ntBASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 AC107297.1-201ENST00000459991 176 ntBASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 AC091951.2-201ENST00000500762 203 ntBASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 RNU7-181P-201ENST00000517234 74 ntBASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 AC024405.2-202ENST00000532731 184 ntBASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 MIR4659A-201ENST00000580269 81 ntBASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 uc_338.16-201ENST00000621804 95 ntBASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 AC073869.6-201ENST00000640656 341 ntBASIC0.13□□□□□ -2.39
SHANK3Q9BYB0 SNORD44.1-201ENST00000363202 61 ntBASIC0.12□□□□□ -2.39
SHANK3Q9BYB0 SNORA24-201ENST00000384096 131 ntBASIC0.12□□□□□ -2.39
SHANK3Q9BYB0 MIR570-201ENST00000384917 97 ntBASIC0.12□□□□□ -2.39
SHANK3Q9BYB0 SNORD57-201ENST00000448188 72 ntBASIC0.12□□□□□ -2.39
SHANK3Q9BYB0 AC108740.1-201ENST00000498629 225 ntBASIC0.12□□□□□ -2.39
SHANK3Q9BYB0 SNORA68.3-201ENST00000515906 83 ntBASIC0.12□□□□□ -2.39
SHANK3Q9BYB0 AC090897.1-201ENST00000580909 226 ntBASIC0.12□□□□□ -2.39
SHANK3Q9BYB0 MIR4645-201ENST00000583158 77 ntBASIC0.12□□□□□ -2.39
SHANK3Q9BYB0 AC008507.4-201ENST00000585464 127 ntBASIC0.12□□□□□ -2.39
SHANK3Q9BYB0 AC113139.1-201ENST00000605049 239 ntBASIC0.12□□□□□ -2.39
SHANK3Q9BYB0 AL080274.1-201ENST00000605565 220 ntBASIC0.12□□□□□ -2.39
SHANK3Q9BYB0 AL669831.3-213ENST00000636676 183 ntBASIC0.12□□□□□ -2.39
SHANK3Q9BYB0 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.11□□□□□ -2.39
SHANK3Q9BYB0 RNU6-349P-201ENST00000362402 107 ntBASIC0.11□□□□□ -2.39
SHANK3Q9BYB0 RNU6-801P-201ENST00000364087 105 ntBASIC0.11□□□□□ -2.39
SHANK3Q9BYB0 Y_RNA.331-201ENST00000365267 102 ntBASIC0.11□□□□□ -2.39
SHANK3Q9BYB0 RNU6-144P-201ENST00000383951 107 ntBASIC0.11□□□□□ -2.39
SHANK3Q9BYB0 Y_RNA.570-201ENST00000384750 101 ntBASIC0.11□□□□□ -2.39
SHANK3Q9BYB0 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC0.11□□□□□ -2.39
SHANK3Q9BYB0 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC0.11□□□□□ -2.39
SHANK3Q9BYB0 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.11□□□□□ -2.39
SHANK3Q9BYB0 Y_RNA.653-201ENST00000459091 95 ntBASIC0.11□□□□□ -2.39
SHANK3Q9BYB0 RNU6-437P-201ENST00000459408 95 ntBASIC0.11□□□□□ -2.39
SHANK3Q9BYB0 Y_RNA.713-201ENST00000517013 96 ntBASIC0.11□□□□□ -2.39
SHANK3Q9BYB0 MIR548AO-201ENST00000579992 96 ntBASIC0.11□□□□□ -2.39
SHANK3Q9BYB0 VN1R91P-201ENST00000594377 169 ntBASIC0.11□□□□□ -2.39
SHANK3Q9BYB0 MIR8055-201ENST00000610739 97 ntBASIC0.11□□□□□ -2.39
SHANK3Q9BYB0 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.11□□□□□ -2.39
SHANK3Q9BYB0 U2.1-201ENST00000618978 145 ntBASIC0.11□□□□□ -2.39
SHANK3Q9BYB0 MIR103A1-201ENST00000362165 78 ntBASIC0.1□□□□□ -2.39
SHANK3Q9BYB0 SNORA72.1-201ENST00000363485 129 ntBASIC0.1□□□□□ -2.39
SHANK3Q9BYB0 Y_RNA.166-201ENST00000363730 102 ntBASIC0.1□□□□□ -2.39
SHANK3Q9BYB0 SNORA63C-201ENST00000364578 129 ntBASIC0.1□□□□□ -2.39
SHANK3Q9BYB0 U8.7-201ENST00000364940 136 ntBASIC0.1□□□□□ -2.39
SHANK3Q9BYB0 SNORA51.10-201ENST00000384418 136 ntBASIC0.1□□□□□ -2.39
SHANK3Q9BYB0 SNORA40.5-201ENST00000391061 128 ntBASIC0.1□□□□□ -2.39
SHANK3Q9BYB0 AF228730.4-201ENST00000421457 183 ntBASIC0.1□□□□□ -2.39
SHANK3Q9BYB0 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.1□□□□□ -2.39
SHANK3Q9BYB0 RNU7-73P-201ENST00000458743 63 ntBASIC0.1□□□□□ -2.39
SHANK3Q9BYB0 RNU6-718P-201ENST00000516166 105 ntBASIC0.1□□□□□ -2.39
SHANK3Q9BYB0 RN7SKP295-201ENST00000517264 153 ntBASIC0.1□□□□□ -2.39
SHANK3Q9BYB0 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.1□□□□□ -2.39
SHANK3Q9BYB0 AC006600.1-201ENST00000572529 153 ntBASIC0.1□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 585.4 ms