Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 HSPE1P25-201ENST00000455484 251 ntBASIC0.69□□□□□ -2.3
MSH4O15457 RNU7-141P-201ENST00000459304 62 ntBASIC0.69□□□□□ -2.3
MSH4O15457 MRPS35P2-201ENST00000508242 191 ntBASIC0.69□□□□□ -2.3
MSH4O15457 RNA5SP480-201ENST00000516840 109 ntBASIC0.69□□□□□ -2.3
MSH4O15457 Y_RNA.713-201ENST00000517013 96 ntBASIC0.69□□□□□ -2.3
MSH4O15457 RNU6-988P-201ENST00000519081 107 ntBASIC0.69□□□□□ -2.3
MSH4O15457 AC131055.1-201ENST00000584626 316 ntBASIC0.69□□□□□ -2.3
MSH4O15457 AP003357.1-201ENST00000604497 148 ntBASIC0.69□□□□□ -2.3
MSH4O15457 SNORD113-5-201ENST00000607261 78 ntBASIC0.69□□□□□ -2.3
MSH4O15457 MIR548AY-201ENST00000617669 107 ntBASIC0.69□□□□□ -2.3
MSH4O15457 HSBP1P2-201ENST00000299671 229 ntBASIC0.68□□□□□ -2.3
MSH4O15457 RNU6-1209P-201ENST00000363655 107 ntBASIC0.68□□□□□ -2.3
MSH4O15457 SNORA36B-201ENST00000410438 131 ntBASIC0.68□□□□□ -2.3
MSH4O15457 RN7SKP164-201ENST00000516138 266 ntBASIC0.68□□□□□ -2.3
MSH4O15457 RNU6-191P-201ENST00000516295 94 ntBASIC0.68□□□□□ -2.3
MSH4O15457 RNY3P15-201ENST00000516297 97 ntBASIC0.68□□□□□ -2.3
MSH4O15457 RNU6-1153P-201ENST00000516760 105 ntBASIC0.68□□□□□ -2.3
MSH4O15457 RNU7-116P-201ENST00000516940 62 ntBASIC0.68□□□□□ -2.3
MSH4O15457 AC109810.1-201ENST00000534066 224 ntBASIC0.68□□□□□ -2.3
MSH4O15457 AC127455.1-201ENST00000565496 145 ntBASIC0.68□□□□□ -2.3
MSH4O15457 MIR3171-201ENST00000584270 74 ntBASIC0.68□□□□□ -2.3
MSH4O15457 AL512605.2-201ENST00000592972 256 ntBASIC0.68□□□□□ -2.3
MSH4O15457 JPX_2.1-201ENST00000614161 69 ntBASIC0.68□□□□□ -2.3
MSH4O15457 Y_RNA.128-201ENST00000363391 112 ntBASIC0.67□□□□□ -2.3
MSH4O15457 Y_RNA.183-201ENST00000363882 113 ntBASIC0.67□□□□□ -2.3
MSH4O15457 SNORD14E-201ENST00000364009 85 ntBASIC0.67□□□□□ -2.3
MSH4O15457 SNORD115-46-201ENST00000390982 71 ntBASIC0.67□□□□□ -2.3
MSH4O15457 MIR548P-201ENST00000408336 84 ntBASIC0.67□□□□□ -2.3
MSH4O15457 MIR1252-201ENST00000408861 65 ntBASIC0.67□□□□□ -2.3
MSH4O15457 RPL21P38-201ENST00000418090 167 ntBASIC0.67□□□□□ -2.3
MSH4O15457 ELOCP20-201ENST00000422460 345 ntBASIC0.67□□□□□ -2.3
MSH4O15457 NDUFA4P2-201ENST00000489989 244 ntBASIC0.67□□□□□ -2.3
MSH4O15457 RNU6-496P-201ENST00000516145 99 ntBASIC0.67□□□□□ -2.3
MSH4O15457 RNU6-764P-201ENST00000516396 105 ntBASIC0.67□□□□□ -2.3
MSH4O15457 Y_RNA.711-201ENST00000516993 102 ntBASIC0.67□□□□□ -2.3
MSH4O15457 RNU6-1137P-201ENST00000517073 99 ntBASIC0.67□□□□□ -2.3
MSH4O15457 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.67□□□□□ -2.3
MSH4O15457 RPL23AP91-201ENST00000569211 455 ntBASIC0.67□□□□□ -2.3
MSH4O15457 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.67□□□□□ -2.3
MSH4O15457 MIR6513-201ENST00000621188 64 ntBASIC0.67□□□□□ -2.3
MSH4O15457 AC134503.1-201ENST00000633048 54 ntBASIC0.67□□□□□ -2.3
MSH4O15457 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.67□□□□□ -2.3
MSH4O15457 AC023934.1-201ENST00000574529 2389 ntBASIC0.67□□□□□ -2.3
MSH4O15457 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.66□□□□□ -2.3
MSH4O15457 Y_RNA.64-201ENST00000362845 102 ntBASIC0.66□□□□□ -2.3
MSH4O15457 RNA5SP499-201ENST00000363982 119 ntBASIC0.66□□□□□ -2.3
MSH4O15457 Y_RNA.210-201ENST00000364161 110 ntBASIC0.66□□□□□ -2.3
MSH4O15457 Y_RNA.214-201ENST00000364201 112 ntBASIC0.66□□□□□ -2.3
MSH4O15457 Y_RNA.222-201ENST00000364264 102 ntBASIC0.66□□□□□ -2.3
MSH4O15457 SNORA72.4-201ENST00000384174 132 ntBASIC0.66□□□□□ -2.3
MSH4O15457 Y_RNA.569-201ENST00000384749 103 ntBASIC0.66□□□□□ -2.3
MSH4O15457 MIR570-201ENST00000384917 97 ntBASIC0.66□□□□□ -2.3
MSH4O15457 RNU6-763P-201ENST00000390865 106 ntBASIC0.66□□□□□ -2.3
MSH4O15457 AL035398.1-201ENST00000430869 322 ntBASIC0.66□□□□□ -2.3
MSH4O15457 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.66□□□□□ -2.3
MSH4O15457 AC131281.1-201ENST00000522984 164 ntBASIC0.66□□□□□ -2.3
MSH4O15457 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.66□□□□□ -2.3
MSH4O15457 AC020661.2-201ENST00000560114 134 ntBASIC0.66□□□□□ -2.3
MSH4O15457 AC005357.1-201ENST00000588399 301 ntBASIC0.66□□□□□ -2.3
MSH4O15457 AL353765.1-201ENST00000605514 183 ntBASIC0.66□□□□□ -2.3
MSH4O15457 AC007742.2-201ENST00000618226 398 ntBASIC0.66□□□□□ -2.3
MSH4O15457 AL442644.1-201ENST00000454390 3105 ntBASIC0.65□□□□□ -2.3
MSH4O15457 Y_RNA.19-201ENST00000362462 99 ntBASIC0.65□□□□□ -2.31
MSH4O15457 snoU2_19.2-201ENST00000363024 80 ntBASIC0.65□□□□□ -2.31
MSH4O15457 RNU6-797P-201ENST00000363101 109 ntBASIC0.65□□□□□ -2.31
MSH4O15457 RNU6-1335P-201ENST00000365426 107 ntBASIC0.65□□□□□ -2.31
MSH4O15457 MIR802-201ENST00000390235 94 ntBASIC0.65□□□□□ -2.31
MSH4O15457 SNORD72-201ENST00000390994 80 ntBASIC0.65□□□□□ -2.31
MSH4O15457 RNU6-383P-201ENST00000410864 94 ntBASIC0.65□□□□□ -2.31
MSH4O15457 RPS26P5-201ENST00000418544 335 ntBASIC0.65□□□□□ -2.31
MSH4O15457 MTCO1P5-201ENST00000433573 344 ntBASIC0.65□□□□□ -2.31
MSH4O15457 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.65□□□□□ -2.31
MSH4O15457 MTND5P22-201ENST00000458380 195 ntBASIC0.65□□□□□ -2.31
MSH4O15457 U7.7-201ENST00000459276 60 ntBASIC0.65□□□□□ -2.31
MSH4O15457 RNU6-437P-201ENST00000459408 95 ntBASIC0.65□□□□□ -2.31
MSH4O15457 SNORA40.15-201ENST00000516884 107 ntBASIC0.65□□□□□ -2.31
MSH4O15457 AP003484.1-201ENST00000530974 250 ntBASIC0.65□□□□□ -2.31
MSH4O15457 AC104465.1-201ENST00000611365 139 ntBASIC0.65□□□□□ -2.31
MSH4O15457 AC008133.2-201ENST00000624540 351 ntBASIC0.65□□□□□ -2.31
MSH4O15457 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC0.65□□□□□ -2.31
MSH4O15457 Y_RNA.16-201ENST00000362421 102 ntBASIC0.64□□□□□ -2.31
MSH4O15457 RNU4-90P-201ENST00000362773 141 ntBASIC0.64□□□□□ -2.31
MSH4O15457 RNU6-770P-201ENST00000363929 105 ntBASIC0.64□□□□□ -2.31
MSH4O15457 SNORA63.7-201ENST00000365579 123 ntBASIC0.64□□□□□ -2.31
MSH4O15457 Y_RNA.393-201ENST00000383936 102 ntBASIC0.64□□□□□ -2.31
MSH4O15457 Y_RNA.455-201ENST00000384230 98 ntBASIC0.64□□□□□ -2.31
MSH4O15457 RNU6-662P-201ENST00000384253 104 ntBASIC0.64□□□□□ -2.31
MSH4O15457 SNORD38C-201ENST00000384381 69 ntBASIC0.64□□□□□ -2.31
MSH4O15457 Y_RNA.541-201ENST00000384640 113 ntBASIC0.64□□□□□ -2.31
MSH4O15457 SNORD89-201ENST00000390981 114 ntBASIC0.64□□□□□ -2.31
MSH4O15457 SNORD28B-201ENST00000390993 75 ntBASIC0.64□□□□□ -2.31
MSH4O15457 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.64□□□□□ -2.31
MSH4O15457 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.64□□□□□ -2.31
MSH4O15457 RNU11-2P-201ENST00000516898 142 ntBASIC0.64□□□□□ -2.31
MSH4O15457 Y_RNA.721-201ENST00000517207 102 ntBASIC0.64□□□□□ -2.31
MSH4O15457 MIR4680-201ENST00000580906 66 ntBASIC0.64□□□□□ -2.31
MSH4O15457 MIR548AR-201ENST00000582191 57 ntBASIC0.64□□□□□ -2.31
MSH4O15457 RNU6-94P-201ENST00000607728 107 ntBASIC0.64□□□□□ -2.31
MSH4O15457 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.64□□□□□ -2.31
MSH4O15457 MIR4251-201ENST00000635819 61 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 211.5 ms