Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 MIR3198-2-201ENST00000577868 80 ntBASIC1.93□□□□□ -2.1
FOXN3O00409 MIR2681-201ENST00000581814 105 ntBASIC1.93□□□□□ -2.1
FOXN3O00409 RNU6-1209P-201ENST00000363655 107 ntBASIC1.92□□□□□ -2.1
FOXN3O00409 Y_RNA.796-201ENST00000364268 102 ntBASIC1.92□□□□□ -2.1
FOXN3O00409 SNORD48-201ENST00000364953 64 ntBASIC1.92□□□□□ -2.1
FOXN3O00409 Y_RNA.799-201ENST00000364992 102 ntBASIC1.92□□□□□ -2.1
FOXN3O00409 RNU6-1336P-201ENST00000383886 109 ntBASIC1.92□□□□□ -2.1
FOXN3O00409 RNY1P5-201ENST00000383890 115 ntBASIC1.92□□□□□ -2.1
FOXN3O00409 RNU6-131P-201ENST00000391144 107 ntBASIC1.92□□□□□ -2.1
FOXN3O00409 SNORA40.18-201ENST00000391200 128 ntBASIC1.92□□□□□ -2.1
FOXN3O00409 U8.16-201ENST00000391279 133 ntBASIC1.92□□□□□ -2.1
FOXN3O00409 AL591806.2-201ENST00000433122 173 ntBASIC1.92□□□□□ -2.1
FOXN3O00409 HSPE1P24-201ENST00000450782 238 ntBASIC1.92□□□□□ -2.1
FOXN3O00409 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.92□□□□□ -2.1
FOXN3O00409 snoU13.23-201ENST00000458863 104 ntBASIC1.92□□□□□ -2.1
FOXN3O00409 snoU13.9-201ENST00000458927 103 ntBASIC1.92□□□□□ -2.1
FOXN3O00409 HMGN1P7-201ENST00000491722 313 ntBASIC1.92□□□□□ -2.1
FOXN3O00409 RNU7-12P-201ENST00000516030 62 ntBASIC1.92□□□□□ -2.1
FOXN3O00409 RNA5SP182-201ENST00000516064 82 ntBASIC1.92□□□□□ -2.1
FOXN3O00409 RNU6-426P-201ENST00000516464 97 ntBASIC1.92□□□□□ -2.1
FOXN3O00409 DEFB122-202ENST00000569013 197 ntBASIC1.92□□□□□ -2.1
FOXN3O00409 AC106754.2-201ENST00000623006 233 ntBASIC1.92□□□□□ -2.1
FOXN3O00409 MTND1P7-201ENST00000632801 297 ntBASIC1.92□□□□□ -2.1
FOXN3O00409 RNU6-1084P-201ENST00000362498 107 ntBASIC1.91□□□□□ -2.1
FOXN3O00409 Y_RNA.215-201ENST00000364204 112 ntBASIC1.91□□□□□ -2.1
FOXN3O00409 RNU6-163P-201ENST00000384396 106 ntBASIC1.91□□□□□ -2.1
FOXN3O00409 MIR934-201ENST00000401241 83 ntBASIC1.91□□□□□ -2.1
FOXN3O00409 RN7SKP101-201ENST00000411376 320 ntBASIC1.91□□□□□ -2.1
FOXN3O00409 SNRPGP8-201ENST00000454064 226 ntBASIC1.91□□□□□ -2.1
FOXN3O00409 AC093850.1-201ENST00000454121 251 ntBASIC1.91□□□□□ -2.1
FOXN3O00409 RNU6-406P-201ENST00000516470 107 ntBASIC1.91□□□□□ -2.1
FOXN3O00409 MIR4285-201ENST00000581001 85 ntBASIC1.91□□□□□ -2.1
FOXN3O00409 AL021707.8-201ENST00000609428 183 ntBASIC1.91□□□□□ -2.1
FOXN3O00409 Y_RNA.778-201ENST00000620203 90 ntBASIC1.91□□□□□ -2.1
FOXN3O00409 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
FOXN3O00409 Y_RNA.400-201ENST00000383963 111 ntBASIC1.9□□□□□ -2.11
FOXN3O00409 Y_RNA.488-201ENST00000384403 102 ntBASIC1.9□□□□□ -2.11
FOXN3O00409 Y_RNA.521-201ENST00000384560 114 ntBASIC1.9□□□□□ -2.11
FOXN3O00409 RNU6-768P-201ENST00000384683 107 ntBASIC1.9□□□□□ -2.11
FOXN3O00409 Y_RNA.580-201ENST00000391004 95 ntBASIC1.9□□□□□ -2.11
FOXN3O00409 SNORD37.2-201ENST00000391075 66 ntBASIC1.9□□□□□ -2.11
FOXN3O00409 AC004965.1-201ENST00000413033 213 ntBASIC1.9□□□□□ -2.11
FOXN3O00409 SNORD11-201ENST00000459124 84 ntBASIC1.9□□□□□ -2.11
FOXN3O00409 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.9□□□□□ -2.11
FOXN3O00409 AC015712.3-201ENST00000559380 164 ntBASIC1.9□□□□□ -2.11
FOXN3O00409 MIR4762-201ENST00000585261 75 ntBASIC1.9□□□□□ -2.11
FOXN3O00409 Y_RNA.91-201ENST00000363042 107 ntBASIC1.89□□□□□ -2.11
FOXN3O00409 RNY1P11-201ENST00000363759 113 ntBASIC1.89□□□□□ -2.11
FOXN3O00409 MIR513A1-201ENST00000385138 129 ntBASIC1.89□□□□□ -2.11
FOXN3O00409 RNA5SP496-201ENST00000391240 109 ntBASIC1.89□□□□□ -2.11
FOXN3O00409 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.89□□□□□ -2.11
FOXN3O00409 TMSB4XP3-201ENST00000445144 114 ntBASIC1.89□□□□□ -2.11
FOXN3O00409 AL392103.1-201ENST00000447000 198 ntBASIC1.89□□□□□ -2.11
FOXN3O00409 AC005840.1-201ENST00000498412 377 ntBASIC1.89□□□□□ -2.11
FOXN3O00409 AC108210.2-201ENST00000503681 201 ntBASIC1.89□□□□□ -2.11
FOXN3O00409 Y_RNA.714-201ENST00000517065 90 ntBASIC1.89□□□□□ -2.11
FOXN3O00409 RNU6-789P-201ENST00000517105 102 ntBASIC1.89□□□□□ -2.11
FOXN3O00409 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
FOXN3O00409 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
FOXN3O00409 RNU6-199P-201ENST00000362954 107 ntBASIC1.88□□□□□ -2.11
FOXN3O00409 RNU6-704P-201ENST00000364162 103 ntBASIC1.88□□□□□ -2.11
FOXN3O00409 U8.5-201ENST00000364528 136 ntBASIC1.88□□□□□ -2.11
FOXN3O00409 Y_RNA.432-201ENST00000384087 111 ntBASIC1.88□□□□□ -2.11
FOXN3O00409 RNU6-424P-201ENST00000384367 105 ntBASIC1.88□□□□□ -2.11
FOXN3O00409 MIR569-201ENST00000385228 96 ntBASIC1.88□□□□□ -2.11
FOXN3O00409 MIR613-201ENST00000385248 95 ntBASIC1.88□□□□□ -2.11
FOXN3O00409 MIR802-201ENST00000390235 94 ntBASIC1.88□□□□□ -2.11
FOXN3O00409 RPL30P13-201ENST00000418873 348 ntBASIC1.88□□□□□ -2.11
FOXN3O00409 NDUFA4P2-201ENST00000489989 244 ntBASIC1.88□□□□□ -2.11
FOXN3O00409 AC019176.1-201ENST00000518519 225 ntBASIC1.88□□□□□ -2.11
FOXN3O00409 SNORA77B-201ENST00000578179 125 ntBASIC1.88□□□□□ -2.11
FOXN3O00409 DNAJC19P2-201ENST00000593340 302 ntBASIC1.88□□□□□ -2.11
FOXN3O00409 uc_338.4-201ENST00000616635 176 ntBASIC1.88□□□□□ -2.11
FOXN3O00409 AL513423.1-201ENST00000621695 132 ntBASIC1.88□□□□□ -2.11
FOXN3O00409 RNA5SP99-201ENST00000364020 114 ntBASIC1.87□□□□□ -2.11
FOXN3O00409 Y_RNA.337-201ENST00000365312 102 ntBASIC1.87□□□□□ -2.11
FOXN3O00409 Y_RNA.343-201ENST00000365354 112 ntBASIC1.87□□□□□ -2.11
FOXN3O00409 RNU6-484P-201ENST00000384016 107 ntBASIC1.87□□□□□ -2.11
FOXN3O00409 Y_RNA.497-201ENST00000384447 98 ntBASIC1.87□□□□□ -2.11
FOXN3O00409 MIR522-201ENST00000385071 87 ntBASIC1.87□□□□□ -2.11
FOXN3O00409 MIR660-201ENST00000385235 97 ntBASIC1.87□□□□□ -2.11
FOXN3O00409 U8.13-201ENST00000390842 128 ntBASIC1.87□□□□□ -2.11
FOXN3O00409 AL606753.1-201ENST00000427435 87 ntBASIC1.87□□□□□ -2.11
FOXN3O00409 AC114811.1-201ENST00000507207 168 ntBASIC1.87□□□□□ -2.11
FOXN3O00409 RNU7-149P-201ENST00000516739 59 ntBASIC1.87□□□□□ -2.11
FOXN3O00409 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.87□□□□□ -2.11
FOXN3O00409 AC120024.3-201ENST00000603167 156 ntBASIC1.87□□□□□ -2.11
FOXN3O00409 AC091895.1-201ENST00000624494 256 ntBASIC1.87□□□□□ -2.11
FOXN3O00409 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC1.87□□□□□ -2.11
FOXN3O00409 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
FOXN3O00409 RNU6-1123P-201ENST00000362347 106 ntBASIC1.86□□□□□ -2.11
FOXN3O00409 MIR194-1-201ENST00000384892 85 ntBASIC1.86□□□□□ -2.11
FOXN3O00409 SNORD72-201ENST00000390994 80 ntBASIC1.86□□□□□ -2.11
FOXN3O00409 SNORA79-201ENST00000408376 140 ntBASIC1.86□□□□□ -2.11
FOXN3O00409 RNU6-588P-201ENST00000410281 105 ntBASIC1.86□□□□□ -2.11
FOXN3O00409 RNU2-70P-201ENST00000410718 179 ntBASIC1.86□□□□□ -2.11
FOXN3O00409 AC023449.1-201ENST00000454464 154 ntBASIC1.86□□□□□ -2.11
FOXN3O00409 RNU6-1299P-201ENST00000516316 100 ntBASIC1.86□□□□□ -2.11
FOXN3O00409 RNU7-121P-201ENST00000516604 62 ntBASIC1.86□□□□□ -2.11
FOXN3O00409 MIR3122-201ENST00000577243 73 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 194.9 ms