Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.24□□□□□ -2.21
NKX3-1Q99801 SNX2P2-201ENST00000424553 323 ntBASIC1.24□□□□□ -2.21
NKX3-1Q99801 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.24□□□□□ -2.21
NKX3-1Q99801 RPS29P23-201ENST00000458635 123 ntBASIC1.24□□□□□ -2.21
NKX3-1Q99801 JPX_2.1-201ENST00000614161 69 ntBASIC1.24□□□□□ -2.21
NKX3-1Q99801 MIR7974-201ENST00000615835 79 ntBASIC1.24□□□□□ -2.21
NKX3-1Q99801 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.24□□□□□ -2.21
NKX3-1Q99801 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
NKX3-1Q99801 RNU6-60P-201ENST00000364792 103 ntBASIC1.23□□□□□ -2.21
NKX3-1Q99801 RNU6-196P-201ENST00000384315 107 ntBASIC1.23□□□□□ -2.21
NKX3-1Q99801 Y_RNA.562-201ENST00000384695 113 ntBASIC1.23□□□□□ -2.21
NKX3-1Q99801 SNORD41-201ENST00000386967 70 ntBASIC1.23□□□□□ -2.21
NKX3-1Q99801 Y_RNA.590-201ENST00000410140 107 ntBASIC1.23□□□□□ -2.21
NKX3-1Q99801 AC009474.2-201ENST00000451383 136 ntBASIC1.23□□□□□ -2.21
NKX3-1Q99801 SNORD2.1-201ENST00000458762 69 ntBASIC1.23□□□□□ -2.21
NKX3-1Q99801 RPL39P38-201ENST00000467018 153 ntBASIC1.23□□□□□ -2.21
NKX3-1Q99801 SNORD116-28-201ENST00000516123 91 ntBASIC1.23□□□□□ -2.21
NKX3-1Q99801 Y_RNA.673-201ENST00000516306 88 ntBASIC1.23□□□□□ -2.21
NKX3-1Q99801 MIR3664-201ENST00000579074 99 ntBASIC1.23□□□□□ -2.21
NKX3-1Q99801 FAM106DP-201ENST00000586416 501 ntBASIC1.23□□□□□ -2.21
NKX3-1Q99801 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.23□□□□□ -2.21
NKX3-1Q99801 U4.1-201ENST00000620349 87 ntBASIC1.23□□□□□ -2.21
NKX3-1Q99801 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.23□□□□□ -2.21
NKX3-1Q99801 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
NKX3-1Q99801 Y_RNA.82-201ENST00000363000 102 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 Y_RNA.92-201ENST00000363043 102 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 Y_RNA.164-201ENST00000363709 102 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 Y_RNA.235-201ENST00000364412 102 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 snoU2-30.1-201ENST00000365012 70 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 Y_RNA.306-201ENST00000365015 102 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 Y_RNA.312-201ENST00000365089 102 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 Y_RNA.322-201ENST00000365151 102 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 Y_RNA.352-201ENST00000365439 102 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 SNORD26-201ENST00000384147 75 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 MIR1302-3-201ENST00000408128 138 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 Y_RNA.650-201ENST00000459002 102 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 RNU6-1053P-201ENST00000515930 101 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 Y_RNA.777-201ENST00000516982 102 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 RNU6-165P-201ENST00000517170 99 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 SNORA31.24-201ENST00000517232 57 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 AC090142.3-201ENST00000519012 385 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 AL512310.8-201ENST00000550183 120 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 AC090049.2-201ENST00000550377 109 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 CYP3A52P-201ENST00000563326 91 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 MIR4724-201ENST00000579485 89 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 MIR2681-201ENST00000581814 105 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 MIR4282-201ENST00000583613 67 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 Y_RNA.771-201ENST00000598668 102 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 AL049861.1-201ENST00000603130 150 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 AC011921.3-201ENST00000605540 361 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 Y_RNA.789-201ENST00000622480 102 ntBASIC1.22□□□□□ -2.21
NKX3-1Q99801 SNORD33-201ENST00000362761 85 ntBASIC1.21□□□□□ -2.22
NKX3-1Q99801 Y_RNA.144-201ENST00000363521 113 ntBASIC1.21□□□□□ -2.22
NKX3-1Q99801 SNORD27-201ENST00000363981 72 ntBASIC1.21□□□□□ -2.22
NKX3-1Q99801 Y_RNA.416-201ENST00000384014 113 ntBASIC1.21□□□□□ -2.22
NKX3-1Q99801 Y_RNA.539-201ENST00000384635 107 ntBASIC1.21□□□□□ -2.22
NKX3-1Q99801 Y_RNA.556-201ENST00000384677 113 ntBASIC1.21□□□□□ -2.22
NKX3-1Q99801 MIR626-201ENST00000385032 94 ntBASIC1.21□□□□□ -2.22
NKX3-1Q99801 RPS29P29-201ENST00000456396 171 ntBASIC1.21□□□□□ -2.22
NKX3-1Q99801 Y_RNA.679-201ENST00000516416 91 ntBASIC1.21□□□□□ -2.22
NKX3-1Q99801 MIR3128-201ENST00000581957 66 ntBASIC1.21□□□□□ -2.22
NKX3-1Q99801 MIR3149-201ENST00000584629 83 ntBASIC1.21□□□□□ -2.22
NKX3-1Q99801 AC008507.4-201ENST00000585464 127 ntBASIC1.21□□□□□ -2.22
NKX3-1Q99801 AL513534.2-201ENST00000603836 250 ntBASIC1.21□□□□□ -2.22
NKX3-1Q99801 snoU13.31-201ENST00000607291 104 ntBASIC1.21□□□□□ -2.22
NKX3-1Q99801 AL021707.8-201ENST00000609428 183 ntBASIC1.21□□□□□ -2.22
NKX3-1Q99801 AC062037.2-201ENST00000610137 73 ntBASIC1.21□□□□□ -2.22
NKX3-1Q99801 Y_RNA.802-201ENST00000614892 130 ntBASIC1.21□□□□□ -2.22
NKX3-1Q99801 AL121890.5-201ENST00000620848 304 ntBASIC1.21□□□□□ -2.22
NKX3-1Q99801 AL161722.3-201ENST00000605789 2983 ntBASIC1.21□□□□□ -2.22
NKX3-1Q99801 MIR367-201ENST00000362299 68 ntBASIC1.2□□□□□ -2.22
NKX3-1Q99801 SNORA2.2-201ENST00000365473 135 ntBASIC1.2□□□□□ -2.22
NKX3-1Q99801 RNU6-463P-201ENST00000384340 107 ntBASIC1.2□□□□□ -2.22
NKX3-1Q99801 RNU6-1065P-201ENST00000384513 106 ntBASIC1.2□□□□□ -2.22
NKX3-1Q99801 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.2□□□□□ -2.22
NKX3-1Q99801 SNRPGP14-201ENST00000435400 219 ntBASIC1.2□□□□□ -2.22
NKX3-1Q99801 AC015922.2-201ENST00000435593 184 ntBASIC1.2□□□□□ -2.22
NKX3-1Q99801 SNRPGP13-201ENST00000442212 177 ntBASIC1.2□□□□□ -2.22
NKX3-1Q99801 AC245047.8-201ENST00000456455 284 ntBASIC1.2□□□□□ -2.22
NKX3-1Q99801 AC068338.1-201ENST00000565567 176 ntBASIC1.2□□□□□ -2.22
NKX3-1Q99801 AC006006.1-201ENST00000603082 144 ntBASIC1.2□□□□□ -2.22
NKX3-1Q99801 AL157834.3-201ENST00000615543 103 ntBASIC1.2□□□□□ -2.22
NKX3-1Q99801 AL365265.1-201ENST00000621045 234 ntBASIC1.2□□□□□ -2.22
NKX3-1Q99801 7SK.10-201ENST00000621414 298 ntBASIC1.2□□□□□ -2.22
NKX3-1Q99801 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.2□□□□□ -2.22
NKX3-1Q99801 ZNF209P-201ENST00000593450 2304 ntBASIC1.2□□□□□ -2.22
NKX3-1Q99801 SNORD14E-201ENST00000364009 85 ntBASIC1.19□□□□□ -2.22
NKX3-1Q99801 snoU2_19.4-201ENST00000364329 80 ntBASIC1.19□□□□□ -2.22
NKX3-1Q99801 RNU6-702P-201ENST00000364982 107 ntBASIC1.19□□□□□ -2.22
NKX3-1Q99801 Y_RNA.336-201ENST00000365307 109 ntBASIC1.19□□□□□ -2.22
NKX3-1Q99801 Y_RNA.452-201ENST00000384202 108 ntBASIC1.19□□□□□ -2.22
NKX3-1Q99801 MT-TT-201ENST00000387460 66 ntBASIC1.19□□□□□ -2.22
NKX3-1Q99801 MIR526A2-201ENST00000390198 65 ntBASIC1.19□□□□□ -2.22
NKX3-1Q99801 AP1B1P2-201ENST00000416196 106 ntBASIC1.19□□□□□ -2.22
NKX3-1Q99801 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.19□□□□□ -2.22
NKX3-1Q99801 RNU7-95P-201ENST00000459222 64 ntBASIC1.19□□□□□ -2.22
NKX3-1Q99801 SCARNA8-201ENST00000515924 131 ntBASIC1.19□□□□□ -2.22
NKX3-1Q99801 RNU6-947P-201ENST00000516264 106 ntBASIC1.19□□□□□ -2.22
NKX3-1Q99801 RNY3P16-201ENST00000516338 101 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 211.5 ms