Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 MIR548O-201ENST00000408583 114 ntBASIC2.61□□□□□ -1.99
EPHB3P54753 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.61□□□□□ -1.99
EPHB3P54753 RNY4P20-201ENST00000516678 93 ntBASIC2.61□□□□□ -1.99
EPHB3P54753 MIR5092-201ENST00000583139 88 ntBASIC2.61□□□□□ -1.99
EPHB3P54753 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC2.61□□□□□ -1.99
EPHB3P54753 Y_RNA.818-201ENST00000618813 71 ntBASIC2.61□□□□□ -1.99
EPHB3P54753 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
EPHB3P54753 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
EPHB3P54753 RNA5SP289-201ENST00000362332 137 ntBASIC2.6□□□□□ -1.99
EPHB3P54753 RNU6-349P-201ENST00000362402 107 ntBASIC2.6□□□□□ -1.99
EPHB3P54753 Y_RNA.78-201ENST00000362970 110 ntBASIC2.6□□□□□ -1.99
EPHB3P54753 Y_RNA.267-201ENST00000364679 109 ntBASIC2.6□□□□□ -1.99
EPHB3P54753 MIR488-201ENST00000365739 83 ntBASIC2.6□□□□□ -1.99
EPHB3P54753 Y_RNA.388-201ENST00000383919 113 ntBASIC2.6□□□□□ -1.99
EPHB3P54753 RNU1-109P-201ENST00000383960 147 ntBASIC2.6□□□□□ -1.99
EPHB3P54753 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
EPHB3P54753 RNU6-440P-201ENST00000390882 105 ntBASIC2.6□□□□□ -1.99
EPHB3P54753 RNA5SP467-201ENST00000391274 118 ntBASIC2.6□□□□□ -1.99
EPHB3P54753 RNU4-53P-201ENST00000410828 140 ntBASIC2.6□□□□□ -1.99
EPHB3P54753 HMGN2P35-201ENST00000412164 270 ntBASIC2.6□□□□□ -1.99
EPHB3P54753 EDDM3CP-201ENST00000415977 425 ntBASIC2.6□□□□□ -1.99
EPHB3P54753 RNU6-970P-201ENST00000516312 107 ntBASIC2.6□□□□□ -1.99
EPHB3P54753 RNU6-762P-201ENST00000517107 102 ntBASIC2.6□□□□□ -1.99
EPHB3P54753 IGKV3-31-201ENST00000523109 329 ntBASIC2.6□□□□□ -1.99
EPHB3P54753 AP002004.2-201ENST00000531656 154 ntBASIC2.6□□□□□ -1.99
EPHB3P54753 MIR5009-201ENST00000578736 100 ntBASIC2.6□□□□□ -1.99
EPHB3P54753 MIR4762-201ENST00000585261 75 ntBASIC2.6□□□□□ -1.99
EPHB3P54753 ZNF720P1-201ENST00000562403 1939 ntBASIC2.6□□□□□ -1.99
EPHB3P54753 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
EPHB3P54753 SNORA1B-201ENST00000362535 133 ntBASIC2.59□□□□□ -1.99
EPHB3P54753 RNA5SP456-201ENST00000364002 114 ntBASIC2.59□□□□□ -1.99
EPHB3P54753 RNU6-690P-201ENST00000365242 106 ntBASIC2.59□□□□□ -1.99
EPHB3P54753 RNU6-1189P-201ENST00000383958 107 ntBASIC2.59□□□□□ -1.99
EPHB3P54753 MIR592-201ENST00000384959 97 ntBASIC2.59□□□□□ -1.99
EPHB3P54753 AC099677.2-201ENST00000436385 175 ntBASIC2.59□□□□□ -1.99
EPHB3P54753 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.59□□□□□ -1.99
EPHB3P54753 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.58□□□□□ -2
EPHB3P54753 U8.2-201ENST00000363156 134 ntBASIC2.58□□□□□ -2
EPHB3P54753 U8.5-201ENST00000364528 136 ntBASIC2.58□□□□□ -2
EPHB3P54753 SNORA2.2-201ENST00000365473 135 ntBASIC2.58□□□□□ -2
EPHB3P54753 MIR590-201ENST00000385008 97 ntBASIC2.58□□□□□ -2
EPHB3P54753 MT-TI-201ENST00000387365 69 ntBASIC2.58□□□□□ -2
EPHB3P54753 MIR1261-201ENST00000408659 82 ntBASIC2.58□□□□□ -2
EPHB3P54753 AC003685.2-201ENST00000422795 395 ntBASIC2.58□□□□□ -2
EPHB3P54753 SNRPGP14-201ENST00000435400 219 ntBASIC2.58□□□□□ -2
EPHB3P54753 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.58□□□□□ -2
EPHB3P54753 RNU7-94P-201ENST00000459576 63 ntBASIC2.58□□□□□ -2
EPHB3P54753 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.58□□□□□ -2
EPHB3P54753 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.58□□□□□ -2
EPHB3P54753 AC234781.5-201ENST00000508429 271 ntBASIC2.58□□□□□ -2
EPHB3P54753 RNU6-1041P-201ENST00000516254 102 ntBASIC2.58□□□□□ -2
EPHB3P54753 RNU6-830P-201ENST00000516353 107 ntBASIC2.58□□□□□ -2
EPHB3P54753 RNU1-142P-201ENST00000516682 145 ntBASIC2.58□□□□□ -2
EPHB3P54753 RNU6-826P-201ENST00000516827 104 ntBASIC2.58□□□□□ -2
EPHB3P54753 AC068339.1-201ENST00000526965 141 ntBASIC2.58□□□□□ -2
EPHB3P54753 AC022217.4-201ENST00000604389 163 ntBASIC2.58□□□□□ -2
EPHB3P54753 ZNF658B-202ENST00000615961 3375 ntBASIC2.58□□□□□ -2
EPHB3P54753 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
EPHB3P54753 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
EPHB3P54753 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.57□□□□□ -2
EPHB3P54753 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.57□□□□□ -2
EPHB3P54753 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
EPHB3P54753 RNU6-414P-201ENST00000363705 104 ntBASIC2.57□□□□□ -2
EPHB3P54753 Y_RNA.298-201ENST00000364960 107 ntBASIC2.57□□□□□ -2
EPHB3P54753 RNU6-442P-201ENST00000383968 104 ntBASIC2.57□□□□□ -2
EPHB3P54753 RNU6-1072P-201ENST00000384703 107 ntBASIC2.57□□□□□ -2
EPHB3P54753 RNU6-443P-201ENST00000384780 107 ntBASIC2.57□□□□□ -2
EPHB3P54753 SNORA3.2-201ENST00000408221 125 ntBASIC2.57□□□□□ -2
EPHB3P54753 AL049830.1-201ENST00000468034 425 ntBASIC2.57□□□□□ -2
EPHB3P54753 CKS1BP2-201ENST00000497342 240 ntBASIC2.57□□□□□ -2
EPHB3P54753 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.57□□□□□ -2
EPHB3P54753 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.57□□□□□ -2
EPHB3P54753 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.56□□□□□ -2
EPHB3P54753 Y_RNA.37-201ENST00000362606 108 ntBASIC2.56□□□□□ -2
EPHB3P54753 SNORA33-201ENST00000363664 130 ntBASIC2.56□□□□□ -2
EPHB3P54753 SNORD115-28-201ENST00000363931 81 ntBASIC2.56□□□□□ -2
EPHB3P54753 RNY1P6-201ENST00000384193 109 ntBASIC2.56□□□□□ -2
EPHB3P54753 MIR515-2-201ENST00000384883 83 ntBASIC2.56□□□□□ -2
EPHB3P54753 MIR515-1-201ENST00000384884 83 ntBASIC2.56□□□□□ -2
EPHB3P54753 MIR759-201ENST00000390224 91 ntBASIC2.56□□□□□ -2
EPHB3P54753 MIR802-201ENST00000390235 94 ntBASIC2.56□□□□□ -2
EPHB3P54753 RNA5SP425-201ENST00000410336 112 ntBASIC2.56□□□□□ -2
EPHB3P54753 RNU2-63P-201ENST00000410792 194 ntBASIC2.56□□□□□ -2
EPHB3P54753 RNU1-131P-201ENST00000458943 161 ntBASIC2.56□□□□□ -2
EPHB3P54753 AC018868.1-201ENST00000491307 315 ntBASIC2.56□□□□□ -2
EPHB3P54753 RNU7-25P-201ENST00000516544 62 ntBASIC2.56□□□□□ -2
EPHB3P54753 AC024995.1-201ENST00000523014 93 ntBASIC2.56□□□□□ -2
EPHB3P54753 AC021443.1-201ENST00000604478 211 ntBASIC2.56□□□□□ -2
EPHB3P54753 AL442128.1-201ENST00000615151 90 ntBASIC2.56□□□□□ -2
EPHB3P54753 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.55□□□□□ -2
EPHB3P54753 RNU6-268P-201ENST00000364174 107 ntBASIC2.55□□□□□ -2
EPHB3P54753 Y_RNA.344-201ENST00000365381 112 ntBASIC2.55□□□□□ -2
EPHB3P54753 Y_RNA.547-201ENST00000384654 119 ntBASIC2.55□□□□□ -2
EPHB3P54753 RN7SKP192-201ENST00000411291 327 ntBASIC2.55□□□□□ -2
EPHB3P54753 Z98742.3-201ENST00000418637 326 ntBASIC2.55□□□□□ -2
EPHB3P54753 RNU7-26P-201ENST00000458980 63 ntBASIC2.55□□□□□ -2
EPHB3P54753 RN7SL297P-201ENST00000483161 293 ntBASIC2.55□□□□□ -2
EPHB3P54753 RNU1-41P-201ENST00000516161 162 ntBASIC2.55□□□□□ -2
EPHB3P54753 RNU6-904P-201ENST00000516206 101 ntBASIC2.55□□□□□ -2
EPHB3P54753 RNU6-109P-201ENST00000516364 107 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 293.8 ms