Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 RNU2-14P-201ENST00000411053 191 ntBASIC0.74□□□□□ -2.29
MSH4O15457 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.74□□□□□ -2.29
MSH4O15457 U8.19-201ENST00000459095 133 ntBASIC0.74□□□□□ -2.29
MSH4O15457 SNORA18.7-201ENST00000516910 131 ntBASIC0.74□□□□□ -2.29
MSH4O15457 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
MSH4O15457 POLR3GP1-201ENST00000594073 261 ntBASIC0.74□□□□□ -2.29
MSH4O15457 AC104695.3-201ENST00000604052 296 ntBASIC0.74□□□□□ -2.29
MSH4O15457 MIR1302-2-201ENST00000607096 138 ntBASIC0.74□□□□□ -2.29
MSH4O15457 AC106800.4-201ENST00000614905 153 ntBASIC0.74□□□□□ -2.29
MSH4O15457 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.74□□□□□ -2.29
MSH4O15457 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.74□□□□□ -2.29
MSH4O15457 RNU4-80P-201ENST00000363200 141 ntBASIC0.73□□□□□ -2.29
MSH4O15457 SNORA25.3-201ENST00000363205 127 ntBASIC0.73□□□□□ -2.29
MSH4O15457 RNU6-102P-201ENST00000384485 104 ntBASIC0.73□□□□□ -2.29
MSH4O15457 MIR608-201ENST00000384820 100 ntBASIC0.73□□□□□ -2.29
MSH4O15457 MIR1278-201ENST00000408753 81 ntBASIC0.73□□□□□ -2.29
MSH4O15457 SNRPGP10-201ENST00000432323 225 ntBASIC0.73□□□□□ -2.29
MSH4O15457 MTND5P15-201ENST00000434246 349 ntBASIC0.73□□□□□ -2.29
MSH4O15457 HMGN2P32-201ENST00000444648 269 ntBASIC0.73□□□□□ -2.29
MSH4O15457 Y_RNA.639-201ENST00000458981 102 ntBASIC0.73□□□□□ -2.29
MSH4O15457 PSMC1P5-201ENST00000512850 177 ntBASIC0.73□□□□□ -2.29
MSH4O15457 RNU7-41P-201ENST00000515917 61 ntBASIC0.73□□□□□ -2.29
MSH4O15457 AC024405.2-202ENST00000532731 184 ntBASIC0.73□□□□□ -2.29
MSH4O15457 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.73□□□□□ -2.29
MSH4O15457 MIR4653-201ENST00000585107 83 ntBASIC0.73□□□□□ -2.29
MSH4O15457 AL590095.2-201ENST00000604136 117 ntBASIC0.73□□□□□ -2.29
MSH4O15457 AL160413.1-201ENST00000622780 310 ntBASIC0.73□□□□□ -2.29
MSH4O15457 AC090574.1-201ENST00000623186 233 ntBASIC0.73□□□□□ -2.29
MSH4O15457 AC134026.1-201ENST00000623249 2239 ntBASIC0.73□□□□□ -2.29
MSH4O15457 Y_RNA.61-201ENST00000362835 102 ntBASIC0.72□□□□□ -2.29
MSH4O15457 SNORD113-8-201ENST00000363497 74 ntBASIC0.72□□□□□ -2.29
MSH4O15457 SNORD50B-201ENST00000364995 70 ntBASIC0.72□□□□□ -2.29
MSH4O15457 Y_RNA.389-201ENST00000383924 113 ntBASIC0.72□□□□□ -2.29
MSH4O15457 Y_RNA.431-201ENST00000384086 102 ntBASIC0.72□□□□□ -2.29
MSH4O15457 SNORD63-201ENST00000384262 68 ntBASIC0.72□□□□□ -2.29
MSH4O15457 MIR613-201ENST00000385248 95 ntBASIC0.72□□□□□ -2.29
MSH4O15457 RNU6-823P-201ENST00000391042 103 ntBASIC0.72□□□□□ -2.29
MSH4O15457 RNU6-710P-201ENST00000410424 105 ntBASIC0.72□□□□□ -2.29
MSH4O15457 POLR2KP2-201ENST00000438155 177 ntBASIC0.72□□□□□ -2.29
MSH4O15457 RPL23AP54-201ENST00000495129 419 ntBASIC0.72□□□□□ -2.29
MSH4O15457 RNA5SP255-201ENST00000516370 107 ntBASIC0.72□□□□□ -2.29
MSH4O15457 Y_RNA.714-201ENST00000517065 90 ntBASIC0.72□□□□□ -2.29
MSH4O15457 RNU6-897P-201ENST00000517135 105 ntBASIC0.72□□□□□ -2.29
MSH4O15457 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.72□□□□□ -2.29
MSH4O15457 MIR4764-201ENST00000580680 88 ntBASIC0.72□□□□□ -2.29
MSH4O15457 RAC1P9-201ENST00000604990 392 ntBASIC0.72□□□□□ -2.29
MSH4O15457 AC068700.1-201ENST00000565862 3754 ntBASIC0.72□□□□□ -2.29
MSH4O15457 Y_RNA.105-201ENST00000363182 111 ntBASIC0.71□□□□□ -2.3
MSH4O15457 Y_RNA.368-201ENST00000365547 113 ntBASIC0.71□□□□□ -2.3
MSH4O15457 SNORA22B-201ENST00000383876 138 ntBASIC0.71□□□□□ -2.3
MSH4O15457 Y_RNA.466-201ENST00000384294 113 ntBASIC0.71□□□□□ -2.3
MSH4O15457 RNU6-342P-201ENST00000384521 104 ntBASIC0.71□□□□□ -2.3
MSH4O15457 Y_RNA.526-201ENST00000384572 110 ntBASIC0.71□□□□□ -2.3
MSH4O15457 Y_RNA.535-201ENST00000384612 99 ntBASIC0.71□□□□□ -2.3
MSH4O15457 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.71□□□□□ -2.3
MSH4O15457 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.71□□□□□ -2.3
MSH4O15457 AL606490.4-201ENST00000423117 127 ntBASIC0.71□□□□□ -2.3
MSH4O15457 FABP5P4-201ENST00000437203 171 ntBASIC0.71□□□□□ -2.3
MSH4O15457 HMGN1P10-201ENST00000474557 553 ntBASIC0.71□□□□□ -2.3
MSH4O15457 AC098869.1-201ENST00000481627 292 ntBASIC0.71□□□□□ -2.3
MSH4O15457 RNU7-43P-201ENST00000516554 64 ntBASIC0.71□□□□□ -2.3
MSH4O15457 Y_RNA.715-201ENST00000517082 110 ntBASIC0.71□□□□□ -2.3
MSH4O15457 AP003716.2-201ENST00000528260 108 ntBASIC0.71□□□□□ -2.3
MSH4O15457 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.71□□□□□ -2.3
MSH4O15457 AC023827.1-201ENST00000569247 97 ntBASIC0.71□□□□□ -2.3
MSH4O15457 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.71□□□□□ -2.3
MSH4O15457 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.71□□□□□ -2.3
MSH4O15457 MIR376A1-201ENST00000616574 68 ntBASIC0.71□□□□□ -2.3
MSH4O15457 SEPT14P17-201ENST00000617978 177 ntBASIC0.71□□□□□ -2.3
MSH4O15457 Y_RNA.28-201ENST00000362554 111 ntBASIC0.7□□□□□ -2.3
MSH4O15457 RNA5SP48-201ENST00000363969 126 ntBASIC0.7□□□□□ -2.3
MSH4O15457 RNU6-801P-201ENST00000364087 105 ntBASIC0.7□□□□□ -2.3
MSH4O15457 RNU6-1323P-201ENST00000384025 107 ntBASIC0.7□□□□□ -2.3
MSH4O15457 Y_RNA.456-201ENST00000384232 111 ntBASIC0.7□□□□□ -2.3
MSH4O15457 Y_RNA.460-201ENST00000384255 102 ntBASIC0.7□□□□□ -2.3
MSH4O15457 Y_RNA.527-201ENST00000384573 102 ntBASIC0.7□□□□□ -2.3
MSH4O15457 MIR1185-1-201ENST00000408598 86 ntBASIC0.7□□□□□ -2.3
MSH4O15457 Y_RNA.604-201ENST00000410574 102 ntBASIC0.7□□□□□ -2.3
MSH4O15457 AC006461.1-201ENST00000412637 326 ntBASIC0.7□□□□□ -2.3
MSH4O15457 SNORD123-201ENST00000459473 70 ntBASIC0.7□□□□□ -2.3
MSH4O15457 Y_RNA.631-201ENST00000459607 101 ntBASIC0.7□□□□□ -2.3
MSH4O15457 SEPT14P8-201ENST00000508026 178 ntBASIC0.7□□□□□ -2.3
MSH4O15457 RNU6-475P-201ENST00000516073 104 ntBASIC0.7□□□□□ -2.3
MSH4O15457 RNU7-115P-201ENST00000516433 55 ntBASIC0.7□□□□□ -2.3
MSH4O15457 AC136628.3-201ENST00000521868 290 ntBASIC0.7□□□□□ -2.3
MSH4O15457 MIR4300-201ENST00000581016 96 ntBASIC0.7□□□□□ -2.3
MSH4O15457 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
MSH4O15457 Y_RNA.26-201ENST00000362539 101 ntBASIC0.69□□□□□ -2.3
MSH4O15457 Y_RNA.203-201ENST00000364106 102 ntBASIC0.69□□□□□ -2.3
MSH4O15457 RNU6-806P-201ENST00000365147 105 ntBASIC0.69□□□□□ -2.3
MSH4O15457 Y_RNA.418-201ENST00000384029 102 ntBASIC0.69□□□□□ -2.3
MSH4O15457 MIR215-201ENST00000384858 110 ntBASIC0.69□□□□□ -2.3
MSH4O15457 MIR605-201ENST00000385078 83 ntBASIC0.69□□□□□ -2.3
MSH4O15457 MIR100-201ENST00000385259 80 ntBASIC0.69□□□□□ -2.3
MSH4O15457 SNORA26.5-201ENST00000391215 123 ntBASIC0.69□□□□□ -2.3
MSH4O15457 MTCO2P33-201ENST00000402100 465 ntBASIC0.69□□□□□ -2.3
MSH4O15457 RNU6-101P-201ENST00000410323 104 ntBASIC0.69□□□□□ -2.3
MSH4O15457 RNU6-121P-201ENST00000410525 99 ntBASIC0.69□□□□□ -2.3
MSH4O15457 AC024067.1-201ENST00000426199 223 ntBASIC0.69□□□□□ -2.3
MSH4O15457 MTCO2P12-201ENST00000427426 682 ntBASIC0.69□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 185 ms