Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 Y_RNA.637-201ENST00000459424 114 ntBASIC1.6□□□□□ -2.15
USP44Q9H0E7 SNORA27.4-201ENST00000516650 95 ntBASIC1.6□□□□□ -2.15
USP44Q9H0E7 AC027279.3-201ENST00000625055 122 ntBASIC1.6□□□□□ -2.15
USP44Q9H0E7 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.15
USP44Q9H0E7 RNU4-41P-201ENST00000364426 143 ntBASIC1.59□□□□□ -2.15
USP44Q9H0E7 RNU6-514P-201ENST00000384208 107 ntBASIC1.59□□□□□ -2.15
USP44Q9H0E7 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.59□□□□□ -2.15
USP44Q9H0E7 Y_RNA.621-201ENST00000411065 96 ntBASIC1.59□□□□□ -2.15
USP44Q9H0E7 Z98949.2-201ENST00000440996 144 ntBASIC1.59□□□□□ -2.15
USP44Q9H0E7 RPL30P7-201ENST00000479312 323 ntBASIC1.59□□□□□ -2.15
USP44Q9H0E7 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.59□□□□□ -2.15
USP44Q9H0E7 AC005840.1-201ENST00000498412 377 ntBASIC1.59□□□□□ -2.15
USP44Q9H0E7 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.59□□□□□ -2.15
USP44Q9H0E7 AL513534.2-201ENST00000603836 250 ntBASIC1.59□□□□□ -2.15
USP44Q9H0E7 MIR548AY-201ENST00000617669 107 ntBASIC1.59□□□□□ -2.15
USP44Q9H0E7 AC134026.1-201ENST00000623249 2239 ntBASIC1.59□□□□□ -2.16
USP44Q9H0E7 UBE2WP1-201ENST00000362030 340 ntBASIC1.58□□□□□ -2.16
USP44Q9H0E7 MIR335-201ENST00000362173 94 ntBASIC1.58□□□□□ -2.16
USP44Q9H0E7 RNY1P10-201ENST00000363268 113 ntBASIC1.58□□□□□ -2.16
USP44Q9H0E7 Y_RNA.217-201ENST00000364214 105 ntBASIC1.58□□□□□ -2.16
USP44Q9H0E7 U8.5-201ENST00000364528 136 ntBASIC1.58□□□□□ -2.16
USP44Q9H0E7 RNA5SP259-201ENST00000365541 109 ntBASIC1.58□□□□□ -2.16
USP44Q9H0E7 RNU1-98P-201ENST00000458992 160 ntBASIC1.58□□□□□ -2.16
USP44Q9H0E7 Y_RNA.641-201ENST00000459414 105 ntBASIC1.58□□□□□ -2.16
USP44Q9H0E7 RPL39P38-201ENST00000467018 153 ntBASIC1.58□□□□□ -2.16
USP44Q9H0E7 RNA5SP168-201ENST00000516642 112 ntBASIC1.58□□□□□ -2.16
USP44Q9H0E7 AC127455.1-201ENST00000565496 145 ntBASIC1.58□□□□□ -2.16
USP44Q9H0E7 MIR3937-201ENST00000580135 106 ntBASIC1.58□□□□□ -2.16
USP44Q9H0E7 MIR4762-201ENST00000585261 75 ntBASIC1.58□□□□□ -2.16
USP44Q9H0E7 AL078604.3-201ENST00000615580 211 ntBASIC1.58□□□□□ -2.16
USP44Q9H0E7 MIR7974-201ENST00000615835 79 ntBASIC1.58□□□□□ -2.16
USP44Q9H0E7 AC068700.1-201ENST00000565862 3754 ntBASIC1.57□□□□□ -2.16
USP44Q9H0E7 RNU6-1272P-201ENST00000362776 107 ntBASIC1.57□□□□□ -2.16
USP44Q9H0E7 MTCO2P33-201ENST00000402100 465 ntBASIC1.57□□□□□ -2.16
USP44Q9H0E7 CALM2P4-201ENST00000430810 426 ntBASIC1.57□□□□□ -2.16
USP44Q9H0E7 CYCTP-201ENST00000504253 315 ntBASIC1.57□□□□□ -2.16
USP44Q9H0E7 TRMT112P2-201ENST00000512910 132 ntBASIC1.57□□□□□ -2.16
USP44Q9H0E7 AL162730.1-201ENST00000605734 292 ntBASIC1.57□□□□□ -2.16
USP44Q9H0E7 AL591926.4-201ENST00000616895 298 ntBASIC1.57□□□□□ -2.16
USP44Q9H0E7 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
USP44Q9H0E7 U6.104-201ENST00000637979 90 ntBASIC1.57□□□□□ -2.16
USP44Q9H0E7 MIRLET7C-201ENST00000362160 84 ntBASIC1.56□□□□□ -2.16
USP44Q9H0E7 RNU6-199P-201ENST00000362954 107 ntBASIC1.56□□□□□ -2.16
USP44Q9H0E7 RNU6-833P-201ENST00000363486 107 ntBASIC1.56□□□□□ -2.16
USP44Q9H0E7 Y_RNA.253-201ENST00000364562 112 ntBASIC1.56□□□□□ -2.16
USP44Q9H0E7 RNU6-53P-201ENST00000365367 106 ntBASIC1.56□□□□□ -2.16
USP44Q9H0E7 U8.16-201ENST00000391279 133 ntBASIC1.56□□□□□ -2.16
USP44Q9H0E7 SNORA36B-201ENST00000410438 131 ntBASIC1.56□□□□□ -2.16
USP44Q9H0E7 BTF3P11-201ENST00000426582 477 ntBASIC1.56□□□□□ -2.16
USP44Q9H0E7 RPL23AP54-201ENST00000495129 419 ntBASIC1.56□□□□□ -2.16
USP44Q9H0E7 RNU6-322P-201ENST00000516010 103 ntBASIC1.56□□□□□ -2.16
USP44Q9H0E7 MIR2681-201ENST00000581814 105 ntBASIC1.56□□□□□ -2.16
USP44Q9H0E7 AC012433.1-201ENST00000588916 398 ntBASIC1.56□□□□□ -2.16
USP44Q9H0E7 AL157834.3-201ENST00000615543 103 ntBASIC1.56□□□□□ -2.16
USP44Q9H0E7 snoU18.1-201ENST00000629629 71 ntBASIC1.56□□□□□ -2.16
USP44Q9H0E7 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
USP44Q9H0E7 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.55□□□□□ -2.16
USP44Q9H0E7 Y_RNA.44-201ENST00000362676 108 ntBASIC1.55□□□□□ -2.16
USP44Q9H0E7 RNU6-899P-201ENST00000363947 107 ntBASIC1.55□□□□□ -2.16
USP44Q9H0E7 Y_RNA.242-201ENST00000364473 110 ntBASIC1.55□□□□□ -2.16
USP44Q9H0E7 Y_RNA.275-201ENST00000364726 110 ntBASIC1.55□□□□□ -2.16
USP44Q9H0E7 Y_RNA.327-201ENST00000365201 102 ntBASIC1.55□□□□□ -2.16
USP44Q9H0E7 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.55□□□□□ -2.16
USP44Q9H0E7 RNU2-38P-201ENST00000410856 79 ntBASIC1.55□□□□□ -2.16
USP44Q9H0E7 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC1.55□□□□□ -2.16
USP44Q9H0E7 SNORD127-201ENST00000458892 86 ntBASIC1.55□□□□□ -2.16
USP44Q9H0E7 RNU6-1007P-201ENST00000516586 107 ntBASIC1.55□□□□□ -2.16
USP44Q9H0E7 SUMO2P16-201ENST00000519475 264 ntBASIC1.55□□□□□ -2.16
USP44Q9H0E7 MIR4503-201ENST00000582187 83 ntBASIC1.55□□□□□ -2.16
USP44Q9H0E7 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.55□□□□□ -2.16
USP44Q9H0E7 AC005357.1-201ENST00000588399 301 ntBASIC1.55□□□□□ -2.16
USP44Q9H0E7 U2.14-201ENST00000615943 113 ntBASIC1.55□□□□□ -2.16
USP44Q9H0E7 MIR337-201ENST00000362281 93 ntBASIC1.54□□□□□ -2.16
USP44Q9H0E7 Y_RNA.117-201ENST00000363294 101 ntBASIC1.54□□□□□ -2.16
USP44Q9H0E7 Y_RNA.203-201ENST00000364106 102 ntBASIC1.54□□□□□ -2.16
USP44Q9H0E7 RNU6-392P-201ENST00000364926 101 ntBASIC1.54□□□□□ -2.16
USP44Q9H0E7 SNORA2.2-201ENST00000365473 135 ntBASIC1.54□□□□□ -2.16
USP44Q9H0E7 RNU6-574P-201ENST00000384265 107 ntBASIC1.54□□□□□ -2.16
USP44Q9H0E7 MIR653-201ENST00000385279 96 ntBASIC1.54□□□□□ -2.16
USP44Q9H0E7 MIR891A-201ENST00000401237 79 ntBASIC1.54□□□□□ -2.16
USP44Q9H0E7 MIR1302-3-201ENST00000408128 138 ntBASIC1.54□□□□□ -2.16
USP44Q9H0E7 RNU7-12P-201ENST00000516030 62 ntBASIC1.54□□□□□ -2.16
USP44Q9H0E7 Y_RNA.668-201ENST00000516233 93 ntBASIC1.54□□□□□ -2.16
USP44Q9H0E7 MIR4781-201ENST00000585250 76 ntBASIC1.54□□□□□ -2.16
USP44Q9H0E7 AC087685.1-201ENST00000587507 141 ntBASIC1.54□□□□□ -2.16
USP44Q9H0E7 AL008718.3-201ENST00000610217 321 ntBASIC1.54□□□□□ -2.16
USP44Q9H0E7 AC013791.1-201ENST00000616619 62 ntBASIC1.54□□□□□ -2.16
USP44Q9H0E7 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.54□□□□□ -2.16
USP44Q9H0E7 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.53□□□□□ -2.16
USP44Q9H0E7 SNORD68-201ENST00000363214 84 ntBASIC1.53□□□□□ -2.16
USP44Q9H0E7 RNU6-740P-201ENST00000364734 105 ntBASIC1.53□□□□□ -2.16
USP44Q9H0E7 Y_RNA.288-201ENST00000364854 92 ntBASIC1.53□□□□□ -2.16
USP44Q9H0E7 RNU6-1289P-201ENST00000384431 106 ntBASIC1.53□□□□□ -2.16
USP44Q9H0E7 Y_RNA.556-201ENST00000384677 113 ntBASIC1.53□□□□□ -2.16
USP44Q9H0E7 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.53□□□□□ -2.16
USP44Q9H0E7 RNU6-651P-201ENST00000411040 105 ntBASIC1.53□□□□□ -2.16
USP44Q9H0E7 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.53□□□□□ -2.16
USP44Q9H0E7 RPS29P23-201ENST00000458635 123 ntBASIC1.53□□□□□ -2.16
USP44Q9H0E7 RNU6-437P-201ENST00000459408 95 ntBASIC1.53□□□□□ -2.16
USP44Q9H0E7 HMGN1P7-201ENST00000491722 313 ntBASIC1.53□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 188.2 ms