Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 MIR15B-201ENST00000385045 98 ntBASIC1.75□□□□□ -2.13
CLIP4Q8N3C7 AC245047.3-201ENST00000429428 127 ntBASIC1.75□□□□□ -2.13
CLIP4Q8N3C7 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
CLIP4Q8N3C7 HMGN1P7-201ENST00000491722 313 ntBASIC1.75□□□□□ -2.13
CLIP4Q8N3C7 AP002004.2-201ENST00000531656 154 ntBASIC1.75□□□□□ -2.13
CLIP4Q8N3C7 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
CLIP4Q8N3C7 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
CLIP4Q8N3C7 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
CLIP4Q8N3C7 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
CLIP4Q8N3C7 MIR126-201ENST00000362291 85 ntBASIC1.74□□□□□ -2.13
CLIP4Q8N3C7 RNU4-84P-201ENST00000364200 139 ntBASIC1.74□□□□□ -2.13
CLIP4Q8N3C7 Y_RNA.253-201ENST00000364562 112 ntBASIC1.74□□□□□ -2.13
CLIP4Q8N3C7 Y_RNA.398-201ENST00000383952 99 ntBASIC1.74□□□□□ -2.13
CLIP4Q8N3C7 MIR1261-201ENST00000408659 82 ntBASIC1.74□□□□□ -2.13
CLIP4Q8N3C7 MLLT10P1-201ENST00000418346 262 ntBASIC1.74□□□□□ -2.13
CLIP4Q8N3C7 SNRPGP10-201ENST00000432323 225 ntBASIC1.74□□□□□ -2.13
CLIP4Q8N3C7 AC245047.4-201ENST00000433189 144 ntBASIC1.74□□□□□ -2.13
CLIP4Q8N3C7 RPS27P1-201ENST00000450552 247 ntBASIC1.74□□□□□ -2.13
CLIP4Q8N3C7 SNORD11-201ENST00000459124 84 ntBASIC1.74□□□□□ -2.13
CLIP4Q8N3C7 AC005840.1-201ENST00000498412 377 ntBASIC1.74□□□□□ -2.13
CLIP4Q8N3C7 RNU2-56P-201ENST00000516826 190 ntBASIC1.74□□□□□ -2.13
CLIP4Q8N3C7 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.74□□□□□ -2.13
CLIP4Q8N3C7 uc_338.4-201ENST00000616635 176 ntBASIC1.74□□□□□ -2.13
CLIP4Q8N3C7 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
CLIP4Q8N3C7 Y_RNA.170-201ENST00000363746 110 ntBASIC1.73□□□□□ -2.13
CLIP4Q8N3C7 RNU6-239P-201ENST00000390990 99 ntBASIC1.73□□□□□ -2.13
CLIP4Q8N3C7 RN7SKP192-201ENST00000411291 327 ntBASIC1.73□□□□□ -2.13
CLIP4Q8N3C7 AC006461.1-201ENST00000412637 326 ntBASIC1.73□□□□□ -2.13
CLIP4Q8N3C7 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.73□□□□□ -2.13
CLIP4Q8N3C7 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.73□□□□□ -2.13
CLIP4Q8N3C7 RNU1-41P-201ENST00000516161 162 ntBASIC1.73□□□□□ -2.13
CLIP4Q8N3C7 RNU1-48P-201ENST00000516400 162 ntBASIC1.73□□□□□ -2.13
CLIP4Q8N3C7 MTND5P41-201ENST00000517498 206 ntBASIC1.73□□□□□ -2.13
CLIP4Q8N3C7 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.73□□□□□ -2.13
CLIP4Q8N3C7 AL591926.4-201ENST00000616895 298 ntBASIC1.73□□□□□ -2.13
CLIP4Q8N3C7 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.73□□□□□ -2.13
CLIP4Q8N3C7 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
CLIP4Q8N3C7 SNORD45.3-201ENST00000363836 72 ntBASIC1.72□□□□□ -2.13
CLIP4Q8N3C7 Y_RNA.265-201ENST00000364677 108 ntBASIC1.72□□□□□ -2.13
CLIP4Q8N3C7 RNU6-746P-201ENST00000384112 109 ntBASIC1.72□□□□□ -2.13
CLIP4Q8N3C7 Y_RNA.506-201ENST00000384494 102 ntBASIC1.72□□□□□ -2.13
CLIP4Q8N3C7 SNORA12.1-201ENST00000390873 148 ntBASIC1.72□□□□□ -2.13
CLIP4Q8N3C7 RNU6-440P-201ENST00000390882 105 ntBASIC1.72□□□□□ -2.13
CLIP4Q8N3C7 AL158823.1-201ENST00000418441 478 ntBASIC1.72□□□□□ -2.13
CLIP4Q8N3C7 RPL31P63-201ENST00000422565 375 ntBASIC1.72□□□□□ -2.13
CLIP4Q8N3C7 AC069257.2-201ENST00000441819 155 ntBASIC1.72□□□□□ -2.13
CLIP4Q8N3C7 RNU6-1299P-201ENST00000516316 100 ntBASIC1.72□□□□□ -2.13
CLIP4Q8N3C7 SUB1P4-201ENST00000566062 339 ntBASIC1.72□□□□□ -2.13
CLIP4Q8N3C7 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.72□□□□□ -2.13
CLIP4Q8N3C7 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.72□□□□□ -2.13
CLIP4Q8N3C7 MIR8054-201ENST00000620877 86 ntBASIC1.72□□□□□ -2.13
CLIP4Q8N3C7 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
CLIP4Q8N3C7 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.72□□□□□ -2.13
CLIP4Q8N3C7 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
CLIP4Q8N3C7 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.71□□□□□ -2.14
CLIP4Q8N3C7 SNORD68-201ENST00000363214 84 ntBASIC1.71□□□□□ -2.14
CLIP4Q8N3C7 SNORA16.1-201ENST00000364597 132 ntBASIC1.71□□□□□ -2.14
CLIP4Q8N3C7 RNA5SP363-201ENST00000365072 115 ntBASIC1.71□□□□□ -2.14
CLIP4Q8N3C7 RNU6-1130P-201ENST00000365434 107 ntBASIC1.71□□□□□ -2.14
CLIP4Q8N3C7 RNU6-449P-201ENST00000383914 107 ntBASIC1.71□□□□□ -2.14
CLIP4Q8N3C7 SNORD116-18-201ENST00000383961 92 ntBASIC1.71□□□□□ -2.14
CLIP4Q8N3C7 RNU6-643P-201ENST00000384018 107 ntBASIC1.71□□□□□ -2.14
CLIP4Q8N3C7 Y_RNA.580-201ENST00000391004 95 ntBASIC1.71□□□□□ -2.14
CLIP4Q8N3C7 SNORA79-201ENST00000408376 140 ntBASIC1.71□□□□□ -2.14
CLIP4Q8N3C7 RNU2-55P-201ENST00000411146 174 ntBASIC1.71□□□□□ -2.14
CLIP4Q8N3C7 NDUFA4P2-201ENST00000489989 244 ntBASIC1.71□□□□□ -2.14
CLIP4Q8N3C7 AC107027.2-201ENST00000512197 115 ntBASIC1.71□□□□□ -2.14
CLIP4Q8N3C7 RNU7-149P-201ENST00000516739 59 ntBASIC1.71□□□□□ -2.14
CLIP4Q8N3C7 Y_RNA.714-201ENST00000517065 90 ntBASIC1.71□□□□□ -2.14
CLIP4Q8N3C7 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.71□□□□□ -2.14
CLIP4Q8N3C7 MIR4287-201ENST00000579398 78 ntBASIC1.71□□□□□ -2.14
CLIP4Q8N3C7 MIR4648-201ENST00000580107 72 ntBASIC1.71□□□□□ -2.14
CLIP4Q8N3C7 MIR3133-201ENST00000583157 78 ntBASIC1.71□□□□□ -2.14
CLIP4Q8N3C7 Pinc.1-201ENST00000616452 154 ntBASIC1.71□□□□□ -2.14
CLIP4Q8N3C7 U1.36-201ENST00000620684 176 ntBASIC1.71□□□□□ -2.14
CLIP4Q8N3C7 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.71□□□□□ -2.14
CLIP4Q8N3C7 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.7□□□□□ -2.14
CLIP4Q8N3C7 Y_RNA.432-201ENST00000384087 111 ntBASIC1.7□□□□□ -2.14
CLIP4Q8N3C7 RNU6-125P-201ENST00000384505 107 ntBASIC1.7□□□□□ -2.14
CLIP4Q8N3C7 MIR520A-201ENST00000384862 85 ntBASIC1.7□□□□□ -2.14
CLIP4Q8N3C7 MIR522-201ENST00000385071 87 ntBASIC1.7□□□□□ -2.14
CLIP4Q8N3C7 RNU6-131P-201ENST00000391144 107 ntBASIC1.7□□□□□ -2.14
CLIP4Q8N3C7 RNU4-43P-201ENST00000410628 137 ntBASIC1.7□□□□□ -2.14
CLIP4Q8N3C7 RNU2-7P-201ENST00000410794 178 ntBASIC1.7□□□□□ -2.14
CLIP4Q8N3C7 RNA5SP100-201ENST00000410903 110 ntBASIC1.7□□□□□ -2.14
CLIP4Q8N3C7 RNA5SP59-201ENST00000410922 110 ntBASIC1.7□□□□□ -2.14
CLIP4Q8N3C7 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.7□□□□□ -2.14
CLIP4Q8N3C7 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.7□□□□□ -2.14
CLIP4Q8N3C7 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.7□□□□□ -2.14
CLIP4Q8N3C7 OR9P1P-201ENST00000496431 281 ntBASIC1.7□□□□□ -2.14
CLIP4Q8N3C7 RNU7-200P-201ENST00000516105 62 ntBASIC1.7□□□□□ -2.14
CLIP4Q8N3C7 SNORD77.4-201ENST00000516158 81 ntBASIC1.7□□□□□ -2.14
CLIP4Q8N3C7 RNU7-121P-201ENST00000516604 62 ntBASIC1.7□□□□□ -2.14
CLIP4Q8N3C7 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.7□□□□□ -2.14
CLIP4Q8N3C7 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.7□□□□□ -2.14
CLIP4Q8N3C7 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.7□□□□□ -2.14
CLIP4Q8N3C7 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.7□□□□□ -2.14
CLIP4Q8N3C7 ZNF355P-201ENST00000427301 3216 ntBASIC1.7□□□□□ -2.14
CLIP4Q8N3C7 AC008555.8-201ENST00000623602 2168 ntBASIC1.69□□□□□ -2.14
CLIP4Q8N3C7 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 207.3 ms