Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 HMGN2P32-201ENST00000444648 269 ntBASIC2.68□□□□□ -1.98
EPHB3P54753 RNU6-693P-201ENST00000516134 107 ntBASIC2.68□□□□□ -1.98
EPHB3P54753 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.68□□□□□ -1.98
EPHB3P54753 MIR3199-1-201ENST00000582434 88 ntBASIC2.68□□□□□ -1.98
EPHB3P54753 AC007229.1-201ENST00000590455 412 ntBASIC2.68□□□□□ -1.98
EPHB3P54753 MIR376A2-201ENST00000636782 80 ntBASIC2.68□□□□□ -1.98
EPHB3P54753 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
EPHB3P54753 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
EPHB3P54753 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
EPHB3P54753 snoU2-30.2-201ENST00000362805 70 ntBASIC2.67□□□□□ -1.98
EPHB3P54753 Y_RNA.198-201ENST00000364013 98 ntBASIC2.67□□□□□ -1.98
EPHB3P54753 RPS15AP28-201ENST00000435088 386 ntBASIC2.67□□□□□ -1.98
EPHB3P54753 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.67□□□□□ -1.98
EPHB3P54753 AC023141.11-201ENST00000508864 202 ntBASIC2.67□□□□□ -1.98
EPHB3P54753 AC011406.1-201ENST00000512440 370 ntBASIC2.67□□□□□ -1.98
EPHB3P54753 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.67□□□□□ -1.98
EPHB3P54753 RNU6-341P-201ENST00000516973 96 ntBASIC2.67□□□□□ -1.98
EPHB3P54753 SNORD53-201ENST00000579969 78 ntBASIC2.67□□□□□ -1.98
EPHB3P54753 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
EPHB3P54753 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
EPHB3P54753 RNU6-1113P-201ENST00000384348 107 ntBASIC2.66□□□□□ -1.98
EPHB3P54753 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.66□□□□□ -1.98
EPHB3P54753 AL117342.1-201ENST00000404861 406 ntBASIC2.66□□□□□ -1.98
EPHB3P54753 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.66□□□□□ -1.98
EPHB3P54753 RPL39P34-201ENST00000477141 156 ntBASIC2.66□□□□□ -1.98
EPHB3P54753 RNA5SP281-201ENST00000516504 135 ntBASIC2.66□□□□□ -1.98
EPHB3P54753 SNORA48.11-201ENST00000517015 89 ntBASIC2.66□□□□□ -1.98
EPHB3P54753 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.66□□□□□ -1.98
EPHB3P54753 MIR5739-201ENST00000619803 80 ntBASIC2.66□□□□□ -1.98
EPHB3P54753 AL589743.1-201ENST00000551932 2712 ntBASIC2.66□□□□□ -1.98
EPHB3P54753 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.66□□□□□ -1.98
EPHB3P54753 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.65□□□□□ -1.98
EPHB3P54753 RNU1-23P-201ENST00000363361 144 ntBASIC2.65□□□□□ -1.99
EPHB3P54753 Y_RNA.544-201ENST00000384650 113 ntBASIC2.65□□□□□ -1.99
EPHB3P54753 Y_RNA.558-201ENST00000384685 113 ntBASIC2.65□□□□□ -1.99
EPHB3P54753 RNU6-220P-201ENST00000390919 107 ntBASIC2.65□□□□□ -1.99
EPHB3P54753 RNU6-1186P-201ENST00000410429 97 ntBASIC2.65□□□□□ -1.99
EPHB3P54753 RNU2-48P-201ENST00000410694 191 ntBASIC2.65□□□□□ -1.99
EPHB3P54753 AL353689.1-201ENST00000438895 199 ntBASIC2.65□□□□□ -1.99
EPHB3P54753 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.65□□□□□ -1.99
EPHB3P54753 AL161788.1-201ENST00000441805 169 ntBASIC2.65□□□□□ -1.99
EPHB3P54753 RNU6-991P-201ENST00000516168 107 ntBASIC2.65□□□□□ -1.99
EPHB3P54753 SNORA40.13-201ENST00000516379 120 ntBASIC2.65□□□□□ -1.99
EPHB3P54753 RNA5SP24-201ENST00000516478 95 ntBASIC2.65□□□□□ -1.99
EPHB3P54753 RNU6-1291P-201ENST00000516591 104 ntBASIC2.65□□□□□ -1.99
EPHB3P54753 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.65□□□□□ -1.99
EPHB3P54753 AL353149.1-201ENST00000610667 244 ntBASIC2.65□□□□□ -1.99
EPHB3P54753 AC064859.1-201ENST00000624741 174 ntBASIC2.65□□□□□ -1.99
EPHB3P54753 MIR6079-201ENST00000635807 62 ntBASIC2.65□□□□□ -1.99
EPHB3P54753 ZNF271P-202ENST00000465539 1970 ntBASIC2.65□□□□□ -1.99
EPHB3P54753 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.64□□□□□ -1.99
EPHB3P54753 RNU6-743P-201ENST00000364151 106 ntBASIC2.64□□□□□ -1.99
EPHB3P54753 RNU6-1131P-201ENST00000364955 107 ntBASIC2.64□□□□□ -1.99
EPHB3P54753 RNU6-49P-201ENST00000384256 107 ntBASIC2.64□□□□□ -1.99
EPHB3P54753 SNORA51.10-201ENST00000384418 136 ntBASIC2.64□□□□□ -1.99
EPHB3P54753 MIR218-1-201ENST00000384999 110 ntBASIC2.64□□□□□ -1.99
EPHB3P54753 RNY4P29-201ENST00000410801 97 ntBASIC2.64□□□□□ -1.99
EPHB3P54753 FTH1P12-201ENST00000432137 551 ntBASIC2.64□□□□□ -1.99
EPHB3P54753 AC104389.3-201ENST00000445629 235 ntBASIC2.64□□□□□ -1.99
EPHB3P54753 AC233266.1-201ENST00000454518 96 ntBASIC2.64□□□□□ -1.99
EPHB3P54753 CYP2C59P-201ENST00000457790 269 ntBASIC2.64□□□□□ -1.99
EPHB3P54753 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.64□□□□□ -1.99
EPHB3P54753 RNU6-240P-201ENST00000516098 97 ntBASIC2.64□□□□□ -1.99
EPHB3P54753 Y_RNA.714-201ENST00000517065 90 ntBASIC2.64□□□□□ -1.99
EPHB3P54753 AC242852.1-201ENST00000612151 96 ntBASIC2.64□□□□□ -1.99
EPHB3P54753 AL359075.3-201ENST00000613288 217 ntBASIC2.64□□□□□ -1.99
EPHB3P54753 AL449363.1-201ENST00000617815 186 ntBASIC2.64□□□□□ -1.99
EPHB3P54753 AC244015.1-201ENST00000622301 99 ntBASIC2.64□□□□□ -1.99
EPHB3P54753 MIR6733-201ENST00000635723 61 ntBASIC2.64□□□□□ -1.99
EPHB3P54753 U6.108-201ENST00000637764 58 ntBASIC2.64□□□□□ -1.99
EPHB3P54753 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.64□□□□□ -1.99
EPHB3P54753 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
EPHB3P54753 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.64□□□□□ -1.99
EPHB3P54753 MIR126-201ENST00000362291 85 ntBASIC2.63□□□□□ -1.99
EPHB3P54753 SNORA63.5-201ENST00000363548 123 ntBASIC2.63□□□□□ -1.99
EPHB3P54753 RNY4P6-201ENST00000363667 96 ntBASIC2.63□□□□□ -1.99
EPHB3P54753 Y_RNA.362-201ENST00000365518 110 ntBASIC2.63□□□□□ -1.99
EPHB3P54753 Y_RNA.410-201ENST00000383992 113 ntBASIC2.63□□□□□ -1.99
EPHB3P54753 MIR522-201ENST00000385071 87 ntBASIC2.63□□□□□ -1.99
EPHB3P54753 RNA5SP210-201ENST00000391034 120 ntBASIC2.63□□□□□ -1.99
EPHB3P54753 AL590004.2-201ENST00000404787 371 ntBASIC2.63□□□□□ -1.99
EPHB3P54753 SNORD88.1-201ENST00000408684 91 ntBASIC2.63□□□□□ -1.99
EPHB3P54753 RPPH1-2P-201ENST00000516688 293 ntBASIC2.63□□□□□ -1.99
EPHB3P54753 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.63□□□□□ -1.99
EPHB3P54753 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.63□□□□□ -1.99
EPHB3P54753 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.62□□□□□ -1.99
EPHB3P54753 VTRNA1-1-201ENST00000363120 99 ntBASIC2.62□□□□□ -1.99
EPHB3P54753 Y_RNA.213-201ENST00000364178 111 ntBASIC2.62□□□□□ -1.99
EPHB3P54753 SNORA70B-201ENST00000384210 135 ntBASIC2.62□□□□□ -1.99
EPHB3P54753 SNORA26.2-201ENST00000390922 122 ntBASIC2.62□□□□□ -1.99
EPHB3P54753 RN7SL636P-201ENST00000497504 294 ntBASIC2.62□□□□□ -1.99
EPHB3P54753 RNU6-158P-201ENST00000517104 100 ntBASIC2.62□□□□□ -1.99
EPHB3P54753 AC004486.1-201ENST00000546846 233 ntBASIC2.62□□□□□ -1.99
EPHB3P54753 AC006441.5-201ENST00000612680 209 ntBASIC2.62□□□□□ -1.99
EPHB3P54753 AC134878.1-201ENST00000619901 243 ntBASIC2.62□□□□□ -1.99
EPHB3P54753 MIR338-201ENST00000636369 67 ntBASIC2.62□□□□□ -1.99
EPHB3P54753 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
EPHB3P54753 AL355596.1-201ENST00000565399 3996 ntBASIC2.61□□□□□ -1.99
EPHB3P54753 MIR181B1-201ENST00000385240 110 ntBASIC2.61□□□□□ -1.99
EPHB3P54753 AL359511.1-201ENST00000402970 211 ntBASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 240.2 ms