Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 RNU6-504P-201ENST00000516568 104 ntBASIC2.8□□□□□ -1.96
EPHB3P54753 RNU6-586P-201ENST00000517265 104 ntBASIC2.8□□□□□ -1.96
EPHB3P54753 RNU6-537P-201ENST00000517277 103 ntBASIC2.8□□□□□ -1.96
EPHB3P54753 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.8□□□□□ -1.96
EPHB3P54753 U6.73-201ENST00000619194 103 ntBASIC2.8□□□□□ -1.96
EPHB3P54753 AC106754.2-201ENST00000623006 233 ntBASIC2.8□□□□□ -1.96
EPHB3P54753 MIR7515-201ENST00000637837 67 ntBASIC2.8□□□□□ -1.96
EPHB3P54753 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.8□□□□□ -1.96
EPHB3P54753 AC108206.1-201ENST00000570186 4159 ntBASIC2.79□□□□□ -1.96
EPHB3P54753 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.79□□□□□ -1.96
EPHB3P54753 MIR627-201ENST00000384979 97 ntBASIC2.79□□□□□ -1.96
EPHB3P54753 RNA5SP508-201ENST00000411327 119 ntBASIC2.79□□□□□ -1.96
EPHB3P54753 AL513328.1-201ENST00000446460 224 ntBASIC2.79□□□□□ -1.96
EPHB3P54753 RN7SL499P-201ENST00000481141 276 ntBASIC2.79□□□□□ -1.96
EPHB3P54753 NDUFA4P2-201ENST00000489989 244 ntBASIC2.79□□□□□ -1.96
EPHB3P54753 RNA5SP148-201ENST00000516527 94 ntBASIC2.79□□□□□ -1.96
EPHB3P54753 RNU6-113P-201ENST00000516653 101 ntBASIC2.79□□□□□ -1.96
EPHB3P54753 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.79□□□□□ -1.96
EPHB3P54753 JPX_2.1-201ENST00000614161 69 ntBASIC2.79□□□□□ -1.96
EPHB3P54753 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.79□□□□□ -1.96
EPHB3P54753 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
EPHB3P54753 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.78□□□□□ -1.96
EPHB3P54753 RNU6-1107P-201ENST00000364817 104 ntBASIC2.78□□□□□ -1.96
EPHB3P54753 RNU6-438P-201ENST00000365561 103 ntBASIC2.78□□□□□ -1.96
EPHB3P54753 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
EPHB3P54753 SNORA1-201ENST00000384107 130 ntBASIC2.78□□□□□ -1.96
EPHB3P54753 MIR570-201ENST00000384917 97 ntBASIC2.78□□□□□ -1.96
EPHB3P54753 MIR520G-201ENST00000385064 90 ntBASIC2.78□□□□□ -1.96
EPHB3P54753 RNA5SP136-201ENST00000410906 107 ntBASIC2.78□□□□□ -1.96
EPHB3P54753 HMGN2P18-201ENST00000450680 270 ntBASIC2.78□□□□□ -1.96
EPHB3P54753 RPS29P21-201ENST00000496272 170 ntBASIC2.78□□□□□ -1.96
EPHB3P54753 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.78□□□□□ -1.96
EPHB3P54753 MIR3129-201ENST00000581095 76 ntBASIC2.78□□□□□ -1.96
EPHB3P54753 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
EPHB3P54753 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.78□□□□□ -1.96
EPHB3P54753 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.77□□□□□ -1.97
EPHB3P54753 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.77□□□□□ -1.97
EPHB3P54753 Y_RNA.85-201ENST00000363014 111 ntBASIC2.77□□□□□ -1.97
EPHB3P54753 SNORD24-201ENST00000383884 75 ntBASIC2.77□□□□□ -1.97
EPHB3P54753 RNU6-905P-201ENST00000384434 107 ntBASIC2.77□□□□□ -1.97
EPHB3P54753 Y_RNA.528-201ENST00000384575 108 ntBASIC2.77□□□□□ -1.97
EPHB3P54753 MIR1263-201ENST00000408324 86 ntBASIC2.77□□□□□ -1.97
EPHB3P54753 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.77□□□□□ -1.97
EPHB3P54753 CALM2P4-201ENST00000430810 426 ntBASIC2.77□□□□□ -1.97
EPHB3P54753 MICF-203ENST00000432679 129 ntBASIC2.77□□□□□ -1.97
EPHB3P54753 UBBP3-201ENST00000445497 241 ntBASIC2.77□□□□□ -1.97
EPHB3P54753 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC2.77□□□□□ -1.97
EPHB3P54753 RNA5SP282-201ENST00000516355 108 ntBASIC2.77□□□□□ -1.97
EPHB3P54753 RNU6-1096P-201ENST00000517089 102 ntBASIC2.77□□□□□ -1.97
EPHB3P54753 MIR4635-201ENST00000583759 79 ntBASIC2.77□□□□□ -1.97
EPHB3P54753 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC2.77□□□□□ -1.97
EPHB3P54753 MIR1248-201ENST00000629190 106 ntBASIC2.77□□□□□ -1.97
EPHB3P54753 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
EPHB3P54753 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.77□□□□□ -1.97
EPHB3P54753 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.76□□□□□ -1.97
EPHB3P54753 RNU6-766P-201ENST00000362478 107 ntBASIC2.76□□□□□ -1.97
EPHB3P54753 RNU6-888P-201ENST00000363010 101 ntBASIC2.76□□□□□ -1.97
EPHB3P54753 RNU6-461P-201ENST00000364195 107 ntBASIC2.76□□□□□ -1.97
EPHB3P54753 RNA5SP125-201ENST00000364843 120 ntBASIC2.76□□□□□ -1.97
EPHB3P54753 Y_RNA.348-201ENST00000365403 103 ntBASIC2.76□□□□□ -1.97
EPHB3P54753 RNY4P30-201ENST00000410216 95 ntBASIC2.76□□□□□ -1.97
EPHB3P54753 RPS29P6-201ENST00000438196 145 ntBASIC2.76□□□□□ -1.97
EPHB3P54753 MRPS17P9-201ENST00000511924 393 ntBASIC2.76□□□□□ -1.97
EPHB3P54753 RNA5SP490-201ENST00000517141 136 ntBASIC2.76□□□□□ -1.97
EPHB3P54753 AC007012.1-201ENST00000567192 175 ntBASIC2.76□□□□□ -1.97
EPHB3P54753 MIR3616-201ENST00000584070 92 ntBASIC2.76□□□□□ -1.97
EPHB3P54753 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.76□□□□□ -1.97
EPHB3P54753 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
EPHB3P54753 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
EPHB3P54753 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.76□□□□□ -1.97
EPHB3P54753 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
EPHB3P54753 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.75□□□□□ -1.97
EPHB3P54753 RNU6-640P-201ENST00000363693 105 ntBASIC2.75□□□□□ -1.97
EPHB3P54753 Y_RNA.328-201ENST00000365208 113 ntBASIC2.75□□□□□ -1.97
EPHB3P54753 SNORD12C-201ENST00000386307 89 ntBASIC2.75□□□□□ -1.97
EPHB3P54753 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
EPHB3P54753 SNORD72-201ENST00000390994 80 ntBASIC2.75□□□□□ -1.97
EPHB3P54753 FO393413.1-201ENST00000402892 195 ntBASIC2.75□□□□□ -1.97
EPHB3P54753 RNU6-1328P-201ENST00000410938 106 ntBASIC2.75□□□□□ -1.97
EPHB3P54753 COX6CP6-201ENST00000490840 228 ntBASIC2.75□□□□□ -1.97
EPHB3P54753 RNU6-856P-201ENST00000516959 98 ntBASIC2.75□□□□□ -1.97
EPHB3P54753 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.75□□□□□ -1.97
EPHB3P54753 PRELID2P1-201ENST00000552837 301 ntBASIC2.75□□□□□ -1.97
EPHB3P54753 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.75□□□□□ -1.97
EPHB3P54753 U2.20-201ENST00000613956 192 ntBASIC2.75□□□□□ -1.97
EPHB3P54753 AC009831.4-201ENST00000620744 325 ntBASIC2.75□□□□□ -1.97
EPHB3P54753 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
EPHB3P54753 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
EPHB3P54753 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.74□□□□□ -1.97
EPHB3P54753 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.74□□□□□ -1.97
EPHB3P54753 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.74□□□□□ -1.97
EPHB3P54753 RNU1-96P-201ENST00000364163 162 ntBASIC2.74□□□□□ -1.97
EPHB3P54753 SNORD61-201ENST00000384252 73 ntBASIC2.74□□□□□ -1.97
EPHB3P54753 AC092427.1-202ENST00000430569 476 ntBASIC2.74□□□□□ -1.97
EPHB3P54753 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.74□□□□□ -1.97
EPHB3P54753 RNU6-965P-201ENST00000516721 96 ntBASIC2.74□□□□□ -1.97
EPHB3P54753 MIR7157-201ENST00000635801 60 ntBASIC2.74□□□□□ -1.97
EPHB3P54753 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.74□□□□□ -1.97
EPHB3P54753 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
EPHB3P54753 AC080128.1-201ENST00000474389 1917 ntBASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 210.9 ms