Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 Y_RNA.54-201ENST00000362766 105 ntBASIC1.28□□□□□ -2.2
HOXC4P09017 SNORD27-201ENST00000363981 72 ntBASIC1.28□□□□□ -2.2
HOXC4P09017 RNU6-326P-201ENST00000365480 107 ntBASIC1.28□□□□□ -2.2
HOXC4P09017 RNU6-662P-201ENST00000384253 104 ntBASIC1.28□□□□□ -2.2
HOXC4P09017 RNU6-1235P-201ENST00000384559 107 ntBASIC1.28□□□□□ -2.2
HOXC4P09017 RNU6-498P-201ENST00000459468 107 ntBASIC1.28□□□□□ -2.2
HOXC4P09017 AC010409.1-201ENST00000487382 476 ntBASIC1.28□□□□□ -2.2
HOXC4P09017 AC091959.1-201ENST00000495857 238 ntBASIC1.28□□□□□ -2.2
HOXC4P09017 RNU6-1041P-201ENST00000516254 102 ntBASIC1.28□□□□□ -2.2
HOXC4P09017 RNU6-191P-201ENST00000516295 94 ntBASIC1.28□□□□□ -2.2
HOXC4P09017 RNU6-388P-201ENST00000517012 105 ntBASIC1.28□□□□□ -2.2
HOXC4P09017 RNU6-389P-201ENST00000517048 105 ntBASIC1.28□□□□□ -2.2
HOXC4P09017 AC006380.1-201ENST00000603598 186 ntBASIC1.28□□□□□ -2.2
HOXC4P09017 AC090425.1-201ENST00000610007 140 ntBASIC1.28□□□□□ -2.2
HOXC4P09017 AC078938.1-201ENST00000620993 318 ntBASIC1.28□□□□□ -2.2
HOXC4P09017 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.28□□□□□ -2.2
HOXC4P09017 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.27□□□□□ -2.21
HOXC4P09017 RNU6-1266P-201ENST00000362794 105 ntBASIC1.27□□□□□ -2.21
HOXC4P09017 Y_RNA.76-201ENST00000362931 109 ntBASIC1.27□□□□□ -2.21
HOXC4P09017 Y_RNA.136-201ENST00000363444 102 ntBASIC1.27□□□□□ -2.21
HOXC4P09017 SNORA33-201ENST00000363664 130 ntBASIC1.27□□□□□ -2.21
HOXC4P09017 RNU6-1048P-201ENST00000364054 107 ntBASIC1.27□□□□□ -2.21
HOXC4P09017 RNU6-740P-201ENST00000364734 105 ntBASIC1.27□□□□□ -2.21
HOXC4P09017 Y_RNA.287-201ENST00000364853 94 ntBASIC1.27□□□□□ -2.21
HOXC4P09017 Y_RNA.361-201ENST00000365515 120 ntBASIC1.27□□□□□ -2.21
HOXC4P09017 RNU2-14P-201ENST00000411053 191 ntBASIC1.27□□□□□ -2.21
HOXC4P09017 RNU2-61P-201ENST00000411069 191 ntBASIC1.27□□□□□ -2.21
HOXC4P09017 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.27□□□□□ -2.21
HOXC4P09017 AC114982.1-201ENST00000469402 321 ntBASIC1.27□□□□□ -2.21
HOXC4P09017 Y_RNA.676-201ENST00000516393 96 ntBASIC1.27□□□□□ -2.21
HOXC4P09017 RNA5SP61-201ENST00000516453 100 ntBASIC1.27□□□□□ -2.21
HOXC4P09017 RNU6-63P-201ENST00000516690 95 ntBASIC1.27□□□□□ -2.21
HOXC4P09017 RNU6-856P-201ENST00000516959 98 ntBASIC1.27□□□□□ -2.21
HOXC4P09017 RNU6-111P-201ENST00000517179 105 ntBASIC1.27□□□□□ -2.21
HOXC4P09017 MIR4422-201ENST00000581938 83 ntBASIC1.27□□□□□ -2.21
HOXC4P09017 AC005357.1-201ENST00000588399 301 ntBASIC1.27□□□□□ -2.21
HOXC4P09017 AC073413.2-201ENST00000604332 360 ntBASIC1.27□□□□□ -2.21
HOXC4P09017 AC022513.1-201ENST00000624512 117 ntBASIC1.27□□□□□ -2.21
HOXC4P09017 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.26□□□□□ -2.21
HOXC4P09017 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.26□□□□□ -2.21
HOXC4P09017 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.26□□□□□ -2.21
HOXC4P09017 Y_RNA.65-201ENST00000362846 100 ntBASIC1.26□□□□□ -2.21
HOXC4P09017 RNU6-801P-201ENST00000364087 105 ntBASIC1.26□□□□□ -2.21
HOXC4P09017 Y_RNA.269-201ENST00000364685 89 ntBASIC1.26□□□□□ -2.21
HOXC4P09017 RNU6-1240P-201ENST00000365155 104 ntBASIC1.26□□□□□ -2.21
HOXC4P09017 RNU6-407P-201ENST00000365280 104 ntBASIC1.26□□□□□ -2.21
HOXC4P09017 Y_RNA.416-201ENST00000384014 113 ntBASIC1.26□□□□□ -2.21
HOXC4P09017 RNU6-439P-201ENST00000384188 106 ntBASIC1.26□□□□□ -2.21
HOXC4P09017 SNORD116-13-201ENST00000384408 92 ntBASIC1.26□□□□□ -2.21
HOXC4P09017 RNU6-417P-201ENST00000384712 107 ntBASIC1.26□□□□□ -2.21
HOXC4P09017 MT-TG-201ENST00000387429 68 ntBASIC1.26□□□□□ -2.21
HOXC4P09017 SNORA53-201ENST00000391141 249 ntBASIC1.26□□□□□ -2.21
HOXC4P09017 Y_RNA.618-201ENST00000410949 107 ntBASIC1.26□□□□□ -2.21
HOXC4P09017 snoU13.9-201ENST00000458927 103 ntBASIC1.26□□□□□ -2.21
HOXC4P09017 AC011406.1-201ENST00000512440 370 ntBASIC1.26□□□□□ -2.21
HOXC4P09017 RNU6-1023P-201ENST00000516137 106 ntBASIC1.26□□□□□ -2.21
HOXC4P09017 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.26□□□□□ -2.21
HOXC4P09017 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.26□□□□□ -2.21
HOXC4P09017 U2.14-201ENST00000615943 113 ntBASIC1.26□□□□□ -2.21
HOXC4P09017 U6.104-201ENST00000637979 90 ntBASIC1.26□□□□□ -2.21
HOXC4P09017 AL159152.1-201ENST00000635019 2587 ntBASIC1.26□□□□□ -2.21
HOXC4P09017 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.26□□□□□ -2.21
HOXC4P09017 SNORA25.1-201ENST00000362326 128 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 Y_RNA.20-201ENST00000362479 113 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 SNORA27.1-201ENST00000362604 124 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 Y_RNA.44-201ENST00000362676 108 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 RNU6-112P-201ENST00000363599 104 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 RNU6-414P-201ENST00000363705 104 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 SNORA20.1-201ENST00000364790 130 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 Y_RNA.352-201ENST00000365439 102 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 Y_RNA.476-201ENST00000384347 108 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 RNA5SP467-201ENST00000391274 118 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 AL117342.1-201ENST00000404861 406 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 RNU6ATAC23P-201ENST00000408448 123 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 AC099677.2-201ENST00000436385 175 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 HMGN2P34-201ENST00000437647 269 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 AC074290.1-201ENST00000448883 135 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 U8.19-201ENST00000459095 133 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 Y_RNA.637-201ENST00000459424 114 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 AC010598.1-201ENST00000510378 103 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 RNA5SP20-201ENST00000515976 84 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 RNU6-1337P-201ENST00000516525 95 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 SNORA27.4-201ENST00000516650 95 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 SUMO2P18-201ENST00000518873 252 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.25□□□□□ -2.21
HOXC4P09017 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.25□□□□□ -2.21
HOXC4P09017 MIR338-201ENST00000636369 67 ntBASIC1.25□□□□□ -2.21
HOXC4P09017 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
HOXC4P09017 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.24□□□□□ -2.21
HOXC4P09017 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.24□□□□□ -2.21
HOXC4P09017 UBE2WP1-201ENST00000362030 340 ntBASIC1.24□□□□□ -2.21
HOXC4P09017 Y_RNA.217-201ENST00000364214 105 ntBASIC1.24□□□□□ -2.21
HOXC4P09017 Y_RNA.275-201ENST00000364726 110 ntBASIC1.24□□□□□ -2.21
HOXC4P09017 Y_RNA.310-201ENST00000365063 113 ntBASIC1.24□□□□□ -2.21
HOXC4P09017 RNU6-1318P-201ENST00000365389 103 ntBASIC1.24□□□□□ -2.21
HOXC4P09017 RNU6-1289P-201ENST00000384431 106 ntBASIC1.24□□□□□ -2.21
HOXC4P09017 RNU6-136P-201ENST00000384663 107 ntBASIC1.24□□□□□ -2.21
HOXC4P09017 SNORA26.5-201ENST00000391215 123 ntBASIC1.24□□□□□ -2.21
HOXC4P09017 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.24□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 339.6 ms