Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 Y_RNA.101-201ENST00000363154 102 ntBASIC0.9□□□□□ -2.27
MSH4O15457 RNU4-73P-201ENST00000363164 141 ntBASIC0.9□□□□□ -2.27
MSH4O15457 RNU6-626P-201ENST00000363354 107 ntBASIC0.9□□□□□ -2.27
MSH4O15457 Y_RNA.146-201ENST00000363549 102 ntBASIC0.9□□□□□ -2.27
MSH4O15457 SNORD114-2-201ENST00000363953 78 ntBASIC0.9□□□□□ -2.27
MSH4O15457 Y_RNA.263-201ENST00000364659 114 ntBASIC0.9□□□□□ -2.27
MSH4O15457 RNU6-20P-201ENST00000384106 107 ntBASIC0.9□□□□□ -2.27
MSH4O15457 Y_RNA.496-201ENST00000384444 101 ntBASIC0.9□□□□□ -2.27
MSH4O15457 MIR628-201ENST00000385229 95 ntBASIC0.9□□□□□ -2.27
MSH4O15457 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.9□□□□□ -2.27
MSH4O15457 RPS4XP11-201ENST00000446897 772 ntBASIC0.9□□□□□ -2.27
MSH4O15457 FGF7P4-201ENST00000509595 295 ntBASIC0.9□□□□□ -2.27
MSH4O15457 RNU6-966P-201ENST00000516479 104 ntBASIC0.9□□□□□ -2.27
MSH4O15457 AC006600.1-201ENST00000572529 153 ntBASIC0.9□□□□□ -2.27
MSH4O15457 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.9□□□□□ -2.27
MSH4O15457 MIR4659A-201ENST00000580269 81 ntBASIC0.9□□□□□ -2.27
MSH4O15457 Y_RNA.187-201ENST00000363918 113 ntBASIC0.89□□□□□ -2.27
MSH4O15457 SNORD115-30-201ENST00000364117 82 ntBASIC0.89□□□□□ -2.27
MSH4O15457 Y_RNA.579-201ENST00000390939 94 ntBASIC0.89□□□□□ -2.27
MSH4O15457 SNORD12-201ENST00000391002 90 ntBASIC0.89□□□□□ -2.27
MSH4O15457 RNA5SP511-201ENST00000410487 115 ntBASIC0.89□□□□□ -2.27
MSH4O15457 Y_RNA.621-201ENST00000411065 96 ntBASIC0.89□□□□□ -2.27
MSH4O15457 AC063976.4-201ENST00000421971 163 ntBASIC0.89□□□□□ -2.27
MSH4O15457 MTND1P14-201ENST00000427400 950 ntBASIC0.89□□□□□ -2.27
MSH4O15457 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.89□□□□□ -2.27
MSH4O15457 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC0.89□□□□□ -2.27
MSH4O15457 UBL5P1-201ENST00000507979 193 ntBASIC0.89□□□□□ -2.27
MSH4O15457 RNU2-12P-201ENST00000517216 168 ntBASIC0.89□□□□□ -2.27
MSH4O15457 DEFB108E-201ENST00000524692 240 ntBASIC0.89□□□□□ -2.27
MSH4O15457 CYP3A137P-201ENST00000562436 69 ntBASIC0.89□□□□□ -2.27
MSH4O15457 U6.92-201ENST00000636464 89 ntBASIC0.89□□□□□ -2.27
MSH4O15457 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
MSH4O15457 RNU6-1187P-201ENST00000364771 110 ntBASIC0.88□□□□□ -2.27
MSH4O15457 Y_RNA.315-201ENST00000365117 102 ntBASIC0.88□□□□□ -2.27
MSH4O15457 Y_RNA.363-201ENST00000365529 113 ntBASIC0.88□□□□□ -2.27
MSH4O15457 Y_RNA.428-201ENST00000384078 102 ntBASIC0.88□□□□□ -2.27
MSH4O15457 RNU6-163P-201ENST00000384396 106 ntBASIC0.88□□□□□ -2.27
MSH4O15457 MIR891A-201ENST00000401237 79 ntBASIC0.88□□□□□ -2.27
MSH4O15457 AL354751.2-201ENST00000415471 210 ntBASIC0.88□□□□□ -2.27
MSH4O15457 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.88□□□□□ -2.27
MSH4O15457 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.88□□□□□ -2.27
MSH4O15457 AC099799.1-201ENST00000439809 192 ntBASIC0.88□□□□□ -2.27
MSH4O15457 FCF1P4-201ENST00000448326 183 ntBASIC0.88□□□□□ -2.27
MSH4O15457 CYCTP-201ENST00000504253 315 ntBASIC0.88□□□□□ -2.27
MSH4O15457 MTND3P22-201ENST00000510932 243 ntBASIC0.88□□□□□ -2.27
MSH4O15457 SNORD79.1-201ENST00000516069 84 ntBASIC0.88□□□□□ -2.27
MSH4O15457 SNORA70.12-201ENST00000516084 153 ntBASIC0.88□□□□□ -2.27
MSH4O15457 RNU6-1337P-201ENST00000516525 95 ntBASIC0.88□□□□□ -2.27
MSH4O15457 RNU6-1012P-201ENST00000516606 109 ntBASIC0.88□□□□□ -2.27
MSH4O15457 SNORD116.3-201ENST00000517176 78 ntBASIC0.88□□□□□ -2.27
MSH4O15457 AC120024.3-201ENST00000603167 156 ntBASIC0.88□□□□□ -2.27
MSH4O15457 AC092447.9-201ENST00000603395 144 ntBASIC0.88□□□□□ -2.27
MSH4O15457 AC108706.1-201ENST00000611053 297 ntBASIC0.88□□□□□ -2.27
MSH4O15457 Y_RNA.5-201ENST00000362334 102 ntBASIC0.87□□□□□ -2.27
MSH4O15457 RNU6-1115P-201ENST00000362490 106 ntBASIC0.87□□□□□ -2.27
MSH4O15457 SNORD68-201ENST00000363214 84 ntBASIC0.87□□□□□ -2.27
MSH4O15457 RNU6-833P-201ENST00000363486 107 ntBASIC0.87□□□□□ -2.27
MSH4O15457 Y_RNA.172-201ENST00000363765 102 ntBASIC0.87□□□□□ -2.27
MSH4O15457 RNU6-324P-201ENST00000363957 106 ntBASIC0.87□□□□□ -2.27
MSH4O15457 RNY1-201ENST00000364228 113 ntBASIC0.87□□□□□ -2.27
MSH4O15457 Y_RNA.361-201ENST00000365515 120 ntBASIC0.87□□□□□ -2.27
MSH4O15457 Y_RNA.419-201ENST00000384041 102 ntBASIC0.87□□□□□ -2.27
MSH4O15457 RNY3P4-201ENST00000384428 101 ntBASIC0.87□□□□□ -2.27
MSH4O15457 MIR526A1-201ENST00000384897 85 ntBASIC0.87□□□□□ -2.27
MSH4O15457 SNORD78.2-201ENST00000391076 69 ntBASIC0.87□□□□□ -2.27
MSH4O15457 AF228730.4-201ENST00000421457 183 ntBASIC0.87□□□□□ -2.27
MSH4O15457 PIGPP3-201ENST00000425307 415 ntBASIC0.87□□□□□ -2.27
MSH4O15457 AC004941.2-201ENST00000427009 228 ntBASIC0.87□□□□□ -2.27
MSH4O15457 AL162725.1-201ENST00000435405 301 ntBASIC0.87□□□□□ -2.27
MSH4O15457 AC002429.1-201ENST00000437672 148 ntBASIC0.87□□□□□ -2.27
MSH4O15457 MTATP6P23-201ENST00000440153 476 ntBASIC0.87□□□□□ -2.27
MSH4O15457 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC0.87□□□□□ -2.27
MSH4O15457 LINC01399-202ENST00000458450 244 ntBASIC0.87□□□□□ -2.27
MSH4O15457 RNU7-152P-201ENST00000458982 64 ntBASIC0.87□□□□□ -2.27
MSH4O15457 RNU6-155P-201ENST00000516347 100 ntBASIC0.87□□□□□ -2.27
MSH4O15457 MIR4661-201ENST00000582720 75 ntBASIC0.87□□□□□ -2.27
MSH4O15457 AC005176.2-201ENST00000596933 147 ntBASIC0.87□□□□□ -2.27
MSH4O15457 AC006380.1-201ENST00000603598 186 ntBASIC0.87□□□□□ -2.27
MSH4O15457 AL133255.1-201ENST00000606374 441 ntBASIC0.87□□□□□ -2.27
MSH4O15457 AC240442.1-201ENST00000616055 283 ntBASIC0.87□□□□□ -2.27
MSH4O15457 MIR4272-201ENST00000635924 64 ntBASIC0.87□□□□□ -2.27
MSH4O15457 SNORD116-13-201ENST00000384408 92 ntBASIC0.86□□□□□ -2.27
MSH4O15457 SNORA80D-201ENST00000384488 135 ntBASIC0.86□□□□□ -2.27
MSH4O15457 AL031003.1-201ENST00000404229 172 ntBASIC0.86□□□□□ -2.27
MSH4O15457 RNU6-1199P-201ENST00000411249 104 ntBASIC0.86□□□□□ -2.27
MSH4O15457 AC236972.2-201ENST00000434979 310 ntBASIC0.86□□□□□ -2.27
MSH4O15457 RPL39P28-201ENST00000465655 155 ntBASIC0.86□□□□□ -2.27
MSH4O15457 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.86□□□□□ -2.27
MSH4O15457 SNORD111.1-201ENST00000516421 86 ntBASIC0.86□□□□□ -2.27
MSH4O15457 MIR5000-201ENST00000577717 103 ntBASIC0.86□□□□□ -2.27
MSH4O15457 VN1R91P-201ENST00000594377 169 ntBASIC0.86□□□□□ -2.27
MSH4O15457 MIR6515-201ENST00000619843 57 ntBASIC0.86□□□□□ -2.27
MSH4O15457 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.85□□□□□ -2.27
MSH4O15457 Y_RNA.813-201ENST00000364639 102 ntBASIC0.85□□□□□ -2.27
MSH4O15457 Y_RNA.446-201ENST00000384178 104 ntBASIC0.85□□□□□ -2.27
MSH4O15457 RNU6-1105P-201ENST00000384774 107 ntBASIC0.85□□□□□ -2.27
MSH4O15457 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
MSH4O15457 RNU6-308P-201ENST00000390957 107 ntBASIC0.85□□□□□ -2.27
MSH4O15457 POLR2J4-204ENST00000418424 324 ntBASIC0.85□□□□□ -2.27
MSH4O15457 MTND4LP11-201ENST00000422184 280 ntBASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 270.8 ms