Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 MIR7974-201ENST00000615835 79 ntBASIC1.33□□□□□ -2.2
HOXC4P09017 AC006001.4-201ENST00000622243 395 ntBASIC1.33□□□□□ -2.2
HOXC4P09017 AC127459.3-201ENST00000624328 466 ntBASIC1.33□□□□□ -2.2
HOXC4P09017 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.33□□□□□ -2.2
HOXC4P09017 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.32□□□□□ -2.2
HOXC4P09017 MIR424-201ENST00000362227 98 ntBASIC1.32□□□□□ -2.2
HOXC4P09017 Y_RNA.4-201ENST00000362333 112 ntBASIC1.32□□□□□ -2.2
HOXC4P09017 RNU4-90P-201ENST00000362773 141 ntBASIC1.32□□□□□ -2.2
HOXC4P09017 Y_RNA.288-201ENST00000364854 92 ntBASIC1.32□□□□□ -2.2
HOXC4P09017 Y_RNA.327-201ENST00000365201 102 ntBASIC1.32□□□□□ -2.2
HOXC4P09017 RNU6-290P-201ENST00000365212 101 ntBASIC1.32□□□□□ -2.2
HOXC4P09017 Y_RNA.383-201ENST00000383855 97 ntBASIC1.32□□□□□ -2.2
HOXC4P09017 RNU6-203P-201ENST00000384038 104 ntBASIC1.32□□□□□ -2.2
HOXC4P09017 Y_RNA.447-201ENST00000384184 113 ntBASIC1.32□□□□□ -2.2
HOXC4P09017 Y_RNA.518-201ENST00000384552 113 ntBASIC1.32□□□□□ -2.2
HOXC4P09017 MIR300-201ENST00000401138 83 ntBASIC1.32□□□□□ -2.2
HOXC4P09017 AL355796.1-201ENST00000406706 323 ntBASIC1.32□□□□□ -2.2
HOXC4P09017 RNU2-54P-201ENST00000410299 190 ntBASIC1.32□□□□□ -2.2
HOXC4P09017 AC123900.1-201ENST00000420390 96 ntBASIC1.32□□□□□ -2.2
HOXC4P09017 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.32□□□□□ -2.2
HOXC4P09017 RNU1-123P-201ENST00000458950 160 ntBASIC1.32□□□□□ -2.2
HOXC4P09017 RNU6-436P-201ENST00000516171 114 ntBASIC1.32□□□□□ -2.2
HOXC4P09017 Y_RNA.673-201ENST00000516306 88 ntBASIC1.32□□□□□ -2.2
HOXC4P09017 RPL21P9-201ENST00000556149 474 ntBASIC1.32□□□□□ -2.2
HOXC4P09017 MIR4643-201ENST00000577473 78 ntBASIC1.32□□□□□ -2.2
HOXC4P09017 DEFB117-201ENST00000602356 141 ntBASIC1.32□□□□□ -2.2
HOXC4P09017 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.32□□□□□ -2.2
HOXC4P09017 AL590240.4-201ENST00000616908 390 ntBASIC1.32□□□□□ -2.2
HOXC4P09017 U6.115-201ENST00000636045 103 ntBASIC1.32□□□□□ -2.2
HOXC4P09017 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.32□□□□□ -2.2
HOXC4P09017 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.32□□□□□ -2.2
HOXC4P09017 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.31□□□□□ -2.2
HOXC4P09017 MIR337-201ENST00000362281 93 ntBASIC1.31□□□□□ -2.2
HOXC4P09017 Y_RNA.60-201ENST00000362831 98 ntBASIC1.31□□□□□ -2.2
HOXC4P09017 Y_RNA.124-201ENST00000363339 93 ntBASIC1.31□□□□□ -2.2
HOXC4P09017 SNORD115-30-201ENST00000364117 82 ntBASIC1.31□□□□□ -2.2
HOXC4P09017 Y_RNA.243-201ENST00000364481 109 ntBASIC1.31□□□□□ -2.2
HOXC4P09017 Y_RNA.329-201ENST00000365209 107 ntBASIC1.31□□□□□ -2.2
HOXC4P09017 RNU6-1310P-201ENST00000384153 107 ntBASIC1.31□□□□□ -2.2
HOXC4P09017 Y_RNA.556-201ENST00000384677 113 ntBASIC1.31□□□□□ -2.2
HOXC4P09017 Y_RNA.562-201ENST00000384695 113 ntBASIC1.31□□□□□ -2.2
HOXC4P09017 Y_RNA.569-201ENST00000384749 103 ntBASIC1.31□□□□□ -2.2
HOXC4P09017 MIR758-201ENST00000390227 88 ntBASIC1.31□□□□□ -2.2
HOXC4P09017 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
HOXC4P09017 RNU6-651P-201ENST00000411040 105 ntBASIC1.31□□□□□ -2.2
HOXC4P09017 TOMM22P2-201ENST00000430735 237 ntBASIC1.31□□□□□ -2.2
HOXC4P09017 NDUFB4P10-201ENST00000452541 359 ntBASIC1.31□□□□□ -2.2
HOXC4P09017 AC005042.3-201ENST00000453230 174 ntBASIC1.31□□□□□ -2.2
HOXC4P09017 RNU6-221P-201ENST00000459541 99 ntBASIC1.31□□□□□ -2.2
HOXC4P09017 AC025647.1-201ENST00000517879 253 ntBASIC1.31□□□□□ -2.2
HOXC4P09017 AC027419.1-201ENST00000522976 328 ntBASIC1.31□□□□□ -2.2
HOXC4P09017 AC084364.2-201ENST00000546924 395 ntBASIC1.31□□□□□ -2.2
HOXC4P09017 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.31□□□□□ -2.2
HOXC4P09017 MIR8074-201ENST00000615081 81 ntBASIC1.31□□□□□ -2.2
HOXC4P09017 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.31□□□□□ -2.2
HOXC4P09017 snoZ196.1-201ENST00000625269 89 ntBASIC1.31□□□□□ -2.2
HOXC4P09017 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
HOXC4P09017 RNU4-80P-201ENST00000363200 141 ntBASIC1.3□□□□□ -2.2
HOXC4P09017 Y_RNA.172-201ENST00000363765 102 ntBASIC1.3□□□□□ -2.2
HOXC4P09017 RNU6-379P-201ENST00000363813 104 ntBASIC1.3□□□□□ -2.2
HOXC4P09017 Y_RNA.188-201ENST00000363952 111 ntBASIC1.3□□□□□ -2.2
HOXC4P09017 RNU6-324P-201ENST00000363957 106 ntBASIC1.3□□□□□ -2.2
HOXC4P09017 Y_RNA.350-201ENST00000365409 98 ntBASIC1.3□□□□□ -2.2
HOXC4P09017 Y_RNA.401-201ENST00000383965 117 ntBASIC1.3□□□□□ -2.2
HOXC4P09017 SNORA40.6-201ENST00000391153 128 ntBASIC1.3□□□□□ -2.2
HOXC4P09017 AL031003.1-201ENST00000404229 172 ntBASIC1.3□□□□□ -2.2
HOXC4P09017 AL603910.2-201ENST00000407268 136 ntBASIC1.3□□□□□ -2.2
HOXC4P09017 AC060773.1-201ENST00000421698 310 ntBASIC1.3□□□□□ -2.2
HOXC4P09017 MTCO1P5-201ENST00000433573 344 ntBASIC1.3□□□□□ -2.2
HOXC4P09017 AL135790.2-201ENST00000437701 267 ntBASIC1.3□□□□□ -2.2
HOXC4P09017 POLR2KP2-201ENST00000438155 177 ntBASIC1.3□□□□□ -2.2
HOXC4P09017 MTND4LP30-201ENST00000454092 297 ntBASIC1.3□□□□□ -2.2
HOXC4P09017 SNORD65B-201ENST00000459126 73 ntBASIC1.3□□□□□ -2.2
HOXC4P09017 SERF1AP1-201ENST00000514575 187 ntBASIC1.3□□□□□ -2.2
HOXC4P09017 RNU6-948P-201ENST00000516374 107 ntBASIC1.3□□□□□ -2.2
HOXC4P09017 RNU6-1271P-201ENST00000517049 105 ntBASIC1.3□□□□□ -2.2
HOXC4P09017 SUB1P4-201ENST00000566062 339 ntBASIC1.3□□□□□ -2.2
HOXC4P09017 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.3□□□□□ -2.2
HOXC4P09017 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
HOXC4P09017 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.29□□□□□ -2.2
HOXC4P09017 MIR335-201ENST00000362173 94 ntBASIC1.29□□□□□ -2.2
HOXC4P09017 Y_RNA.117-201ENST00000363294 101 ntBASIC1.29□□□□□ -2.2
HOXC4P09017 Y_RNA.277-201ENST00000364754 102 ntBASIC1.29□□□□□ -2.2
HOXC4P09017 SNORA20B-201ENST00000384220 132 ntBASIC1.29□□□□□ -2.2
HOXC4P09017 Y_RNA.539-201ENST00000384635 107 ntBASIC1.29□□□□□ -2.2
HOXC4P09017 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.29□□□□□ -2.2
HOXC4P09017 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
HOXC4P09017 RNU6-955P-201ENST00000410497 104 ntBASIC1.29□□□□□ -2.2
HOXC4P09017 AL390729.2-201ENST00000416137 156 ntBASIC1.29□□□□□ -2.2
HOXC4P09017 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.29□□□□□ -2.2
HOXC4P09017 RPS29P23-201ENST00000458635 123 ntBASIC1.29□□□□□ -2.2
HOXC4P09017 RPL39P38-201ENST00000467018 153 ntBASIC1.29□□□□□ -2.2
HOXC4P09017 AC004223.1-201ENST00000479840 271 ntBASIC1.29□□□□□ -2.2
HOXC4P09017 SNORA31.17-201ENST00000516953 127 ntBASIC1.29□□□□□ -2.2
HOXC4P09017 RNU2-31P-201ENST00000516954 155 ntBASIC1.29□□□□□ -2.2
HOXC4P09017 MIR3671-201ENST00000580455 88 ntBASIC1.29□□□□□ -2.2
HOXC4P09017 MIR4781-201ENST00000585250 76 ntBASIC1.29□□□□□ -2.2
HOXC4P09017 AC005828.6-201ENST00000606610 232 ntBASIC1.29□□□□□ -2.2
HOXC4P09017 AL157834.3-201ENST00000615543 103 ntBASIC1.29□□□□□ -2.2
HOXC4P09017 AC068700.1-201ENST00000565862 3754 ntBASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 307.1 ms