Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.41□□□□□ -2.18
HOXC4P09017 MIR8062-201ENST00000621515 85 ntBASIC1.41□□□□□ -2.18
HOXC4P09017 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC1.41□□□□□ -2.18
HOXC4P09017 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.41□□□□□ -2.18
HOXC4P09017 Y_RNA.16-201ENST00000362421 102 ntBASIC1.4□□□□□ -2.19
HOXC4P09017 RNU1-62P-201ENST00000362599 164 ntBASIC1.4□□□□□ -2.19
HOXC4P09017 Y_RNA.101-201ENST00000363154 102 ntBASIC1.4□□□□□ -2.19
HOXC4P09017 SNORA7.1-201ENST00000363750 139 ntBASIC1.4□□□□□ -2.19
HOXC4P09017 Y_RNA.276-201ENST00000364732 109 ntBASIC1.4□□□□□ -2.19
HOXC4P09017 RNU6-160P-201ENST00000384591 107 ntBASIC1.4□□□□□ -2.19
HOXC4P09017 MIR548B-201ENST00000385247 97 ntBASIC1.4□□□□□ -2.19
HOXC4P09017 MIR320A-201ENST00000385302 82 ntBASIC1.4□□□□□ -2.19
HOXC4P09017 SNORA48.1-201ENST00000390879 135 ntBASIC1.4□□□□□ -2.19
HOXC4P09017 Y_RNA.602-201ENST00000410535 92 ntBASIC1.4□□□□□ -2.19
HOXC4P09017 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.4□□□□□ -2.19
HOXC4P09017 UQCRBP2-201ENST00000447827 297 ntBASIC1.4□□□□□ -2.19
HOXC4P09017 RNU7-14P-201ENST00000459331 62 ntBASIC1.4□□□□□ -2.19
HOXC4P09017 RPS23P5-201ENST00000495419 428 ntBASIC1.4□□□□□ -2.19
HOXC4P09017 RNU5F-4P-201ENST00000516581 114 ntBASIC1.4□□□□□ -2.19
HOXC4P09017 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.4□□□□□ -2.19
HOXC4P09017 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.4□□□□□ -2.19
HOXC4P09017 AC018448.1-201ENST00000552843 316 ntBASIC1.4□□□□□ -2.19
HOXC4P09017 AC026470.2-201ENST00000561492 181 ntBASIC1.4□□□□□ -2.19
HOXC4P09017 MIR3149-201ENST00000584629 83 ntBASIC1.4□□□□□ -2.19
HOXC4P09017 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.4□□□□□ -2.19
HOXC4P09017 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.4□□□□□ -2.19
HOXC4P09017 MIR376A1-201ENST00000616574 68 ntBASIC1.4□□□□□ -2.19
HOXC4P09017 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
HOXC4P09017 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.39□□□□□ -2.19
HOXC4P09017 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
HOXC4P09017 Y_RNA.84-201ENST00000363011 104 ntBASIC1.39□□□□□ -2.19
HOXC4P09017 SNORD113-8-201ENST00000363497 74 ntBASIC1.39□□□□□ -2.19
HOXC4P09017 RNU6-454P-201ENST00000364292 107 ntBASIC1.39□□□□□ -2.19
HOXC4P09017 Y_RNA.452-201ENST00000384202 108 ntBASIC1.39□□□□□ -2.19
HOXC4P09017 Y_RNA.498-201ENST00000384460 102 ntBASIC1.39□□□□□ -2.19
HOXC4P09017 AL357139.1-201ENST00000407792 426 ntBASIC1.39□□□□□ -2.19
HOXC4P09017 RAB28P5-201ENST00000427490 651 ntBASIC1.39□□□□□ -2.19
HOXC4P09017 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.39□□□□□ -2.19
HOXC4P09017 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.39□□□□□ -2.19
HOXC4P09017 SNRPGP13-201ENST00000442212 177 ntBASIC1.39□□□□□ -2.19
HOXC4P09017 HMGN2P18-201ENST00000450680 270 ntBASIC1.39□□□□□ -2.19
HOXC4P09017 RNU6-625P-201ENST00000459412 107 ntBASIC1.39□□□□□ -2.19
HOXC4P09017 RNU6-344P-201ENST00000516635 111 ntBASIC1.39□□□□□ -2.19
HOXC4P09017 RNU6-107P-201ENST00000516643 102 ntBASIC1.39□□□□□ -2.19
HOXC4P09017 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.39□□□□□ -2.19
HOXC4P09017 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC1.39□□□□□ -2.19
HOXC4P09017 MIR4423-201ENST00000580922 80 ntBASIC1.39□□□□□ -2.19
HOXC4P09017 SNORD11B-201ENST00000607707 90 ntBASIC1.39□□□□□ -2.19
HOXC4P09017 AC004467.1-201ENST00000615678 330 ntBASIC1.39□□□□□ -2.19
HOXC4P09017 AC068205.3-201ENST00000636385 468 ntBASIC1.39□□□□□ -2.19
HOXC4P09017 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.39□□□□□ -2.19
HOXC4P09017 LINC02555-201ENST00000563933 1951 ntBASIC1.39□□□□□ -2.19
HOXC4P09017 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.38□□□□□ -2.19
HOXC4P09017 RNU6-23P-201ENST00000363283 107 ntBASIC1.38□□□□□ -2.19
HOXC4P09017 RNU6-1305P-201ENST00000364353 104 ntBASIC1.38□□□□□ -2.19
HOXC4P09017 RNU6-1175P-201ENST00000365200 107 ntBASIC1.38□□□□□ -2.19
HOXC4P09017 Y_RNA.461-201ENST00000384263 103 ntBASIC1.38□□□□□ -2.19
HOXC4P09017 Y_RNA.541-201ENST00000384640 113 ntBASIC1.38□□□□□ -2.19
HOXC4P09017 Y_RNA.570-201ENST00000384750 101 ntBASIC1.38□□□□□ -2.19
HOXC4P09017 MIR30A-201ENST00000385092 71 ntBASIC1.38□□□□□ -2.19
HOXC4P09017 MIR320B2-201ENST00000408479 138 ntBASIC1.38□□□□□ -2.19
HOXC4P09017 RNU6-1199P-201ENST00000411249 104 ntBASIC1.38□□□□□ -2.19
HOXC4P09017 AC004965.1-201ENST00000413033 213 ntBASIC1.38□□□□□ -2.19
HOXC4P09017 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.38□□□□□ -2.19
HOXC4P09017 AC016717.1-201ENST00000448918 286 ntBASIC1.38□□□□□ -2.19
HOXC4P09017 HSPE1P25-201ENST00000455484 251 ntBASIC1.38□□□□□ -2.19
HOXC4P09017 HMGN2P9-201ENST00000476875 229 ntBASIC1.38□□□□□ -2.19
HOXC4P09017 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.38□□□□□ -2.19
HOXC4P09017 MTND1P19-201ENST00000511780 315 ntBASIC1.38□□□□□ -2.19
HOXC4P09017 Y_RNA.680-201ENST00000516441 93 ntBASIC1.38□□□□□ -2.19
HOXC4P09017 Y_RNA.713-201ENST00000517013 96 ntBASIC1.38□□□□□ -2.19
HOXC4P09017 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.38□□□□□ -2.19
HOXC4P09017 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC1.38□□□□□ -2.19
HOXC4P09017 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.38□□□□□ -2.19
HOXC4P09017 AC010900.2-201ENST00000604508 210 ntBASIC1.38□□□□□ -2.19
HOXC4P09017 AP001282.2-201ENST00000616149 309 ntBASIC1.38□□□□□ -2.19
HOXC4P09017 U4.1-201ENST00000620349 87 ntBASIC1.38□□□□□ -2.19
HOXC4P09017 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.38□□□□□ -2.19
HOXC4P09017 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.38□□□□□ -2.19
HOXC4P09017 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.37□□□□□ -2.19
HOXC4P09017 SNORD81.1-201ENST00000363064 77 ntBASIC1.37□□□□□ -2.19
HOXC4P09017 RNU6-418P-201ENST00000384035 107 ntBASIC1.37□□□□□ -2.19
HOXC4P09017 RNU6-713P-201ENST00000384761 107 ntBASIC1.37□□□□□ -2.19
HOXC4P09017 RNU6-1203P-201ENST00000410703 110 ntBASIC1.37□□□□□ -2.19
HOXC4P09017 RNU2-38P-201ENST00000410856 79 ntBASIC1.37□□□□□ -2.19
HOXC4P09017 RNU6-321P-201ENST00000410912 106 ntBASIC1.37□□□□□ -2.19
HOXC4P09017 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.37□□□□□ -2.19
HOXC4P09017 AC074133.1-201ENST00000515696 183 ntBASIC1.37□□□□□ -2.19
HOXC4P09017 RNU6-496P-201ENST00000516145 99 ntBASIC1.37□□□□□ -2.19
HOXC4P09017 Y_RNA.668-201ENST00000516233 93 ntBASIC1.37□□□□□ -2.19
HOXC4P09017 RNU1-92P-201ENST00000517017 135 ntBASIC1.37□□□□□ -2.19
HOXC4P09017 AC023157.2-201ENST00000540596 141 ntBASIC1.37□□□□□ -2.19
HOXC4P09017 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.37□□□□□ -2.19
HOXC4P09017 AC005176.2-201ENST00000596933 147 ntBASIC1.37□□□□□ -2.19
HOXC4P09017 AP000942.4-201ENST00000604811 241 ntBASIC1.37□□□□□ -2.19
HOXC4P09017 AC008873.1-201ENST00000625051 138 ntBASIC1.37□□□□□ -2.19
HOXC4P09017 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.37□□□□□ -2.19
HOXC4P09017 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.37□□□□□ -2.19
HOXC4P09017 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
HOXC4P09017 AL391987.6-201ENST00000305671 199 ntBASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 686.5 ms