Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 RNU6-588P-201ENST00000410281 105 ntBASIC2.89□□□□□ -1.95
PTCHD1Q96NR3 RPS4XP11-201ENST00000446897 772 ntBASIC2.89□□□□□ -1.95
PTCHD1Q96NR3 AC092991.1-201ENST00000477176 376 ntBASIC2.89□□□□□ -1.95
PTCHD1Q96NR3 RPS29P21-201ENST00000496272 170 ntBASIC2.89□□□□□ -1.95
PTCHD1Q96NR3 AL049861.1-201ENST00000603130 150 ntBASIC2.89□□□□□ -1.95
PTCHD1Q96NR3 U2.20-201ENST00000613956 192 ntBASIC2.89□□□□□ -1.95
PTCHD1Q96NR3 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
PTCHD1Q96NR3 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.88□□□□□ -1.95
PTCHD1Q96NR3 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
PTCHD1Q96NR3 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
PTCHD1Q96NR3 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
PTCHD1Q96NR3 AC008264.2-201ENST00000610193 3731 ntBASIC2.88□□□□□ -1.95
PTCHD1Q96NR3 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.88□□□□□ -1.95
PTCHD1Q96NR3 MIR340-201ENST00000362125 95 ntBASIC2.88□□□□□ -1.95
PTCHD1Q96NR3 Y_RNA.203-201ENST00000364106 102 ntBASIC2.88□□□□□ -1.95
PTCHD1Q96NR3 MIR539-201ENST00000365690 78 ntBASIC2.88□□□□□ -1.95
PTCHD1Q96NR3 MIR561-201ENST00000385216 97 ntBASIC2.88□□□□□ -1.95
PTCHD1Q96NR3 RNU6-220P-201ENST00000390919 107 ntBASIC2.88□□□□□ -1.95
PTCHD1Q96NR3 SNORA48.2-201ENST00000390926 124 ntBASIC2.88□□□□□ -1.95
PTCHD1Q96NR3 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC2.88□□□□□ -1.95
PTCHD1Q96NR3 MIR378D2-201ENST00000580636 98 ntBASIC2.88□□□□□ -1.95
PTCHD1Q96NR3 MIR2681-201ENST00000581814 105 ntBASIC2.88□□□□□ -1.95
PTCHD1Q96NR3 MIR4325-201ENST00000583049 90 ntBASIC2.88□□□□□ -1.95
PTCHD1Q96NR3 U6.73-201ENST00000619194 103 ntBASIC2.88□□□□□ -1.95
PTCHD1Q96NR3 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.88□□□□□ -1.95
PTCHD1Q96NR3 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC2.88□□□□□ -1.95
PTCHD1Q96NR3 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.88□□□□□ -1.95
PTCHD1Q96NR3 AC009487.2-201ENST00000420969 6821 ntBASIC2.87□□□□□ -1.95
PTCHD1Q96NR3 Y_RNA.218-201ENST00000364218 104 ntBASIC2.87□□□□□ -1.95
PTCHD1Q96NR3 Y_RNA.432-201ENST00000384087 111 ntBASIC2.87□□□□□ -1.95
PTCHD1Q96NR3 MIR128-1-201ENST00000384921 82 ntBASIC2.87□□□□□ -1.95
PTCHD1Q96NR3 RNU6-460P-201ENST00000391158 108 ntBASIC2.87□□□□□ -1.95
PTCHD1Q96NR3 SNORA75.5-201ENST00000391291 81 ntBASIC2.87□□□□□ -1.95
PTCHD1Q96NR3 MIR887-201ENST00000401258 79 ntBASIC2.87□□□□□ -1.95
PTCHD1Q96NR3 AL031121.1-201ENST00000406553 254 ntBASIC2.87□□□□□ -1.95
PTCHD1Q96NR3 RNU2-55P-201ENST00000411146 174 ntBASIC2.87□□□□□ -1.95
PTCHD1Q96NR3 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
PTCHD1Q96NR3 AC060773.1-201ENST00000421698 310 ntBASIC2.87□□□□□ -1.95
PTCHD1Q96NR3 AC022018.1-201ENST00000430685 241 ntBASIC2.87□□□□□ -1.95
PTCHD1Q96NR3 AC245102.2-201ENST00000448956 180 ntBASIC2.87□□□□□ -1.95
PTCHD1Q96NR3 RNU6-1211P-201ENST00000459179 105 ntBASIC2.87□□□□□ -1.95
PTCHD1Q96NR3 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.87□□□□□ -1.95
PTCHD1Q96NR3 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.87□□□□□ -1.95
PTCHD1Q96NR3 TUG1_4.1-201ENST00000619464 181 ntBASIC2.87□□□□□ -1.95
PTCHD1Q96NR3 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
PTCHD1Q96NR3 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.86□□□□□ -1.95
PTCHD1Q96NR3 Y_RNA.71-201ENST00000362892 104 ntBASIC2.86□□□□□ -1.95
PTCHD1Q96NR3 RNU6-1180P-201ENST00000364935 107 ntBASIC2.86□□□□□ -1.95
PTCHD1Q96NR3 RNU6-597P-201ENST00000365620 102 ntBASIC2.86□□□□□ -1.95
PTCHD1Q96NR3 RNU6-1080P-201ENST00000383982 107 ntBASIC2.86□□□□□ -1.95
PTCHD1Q96NR3 Z92545.1-201ENST00000411782 234 ntBASIC2.86□□□□□ -1.95
PTCHD1Q96NR3 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.86□□□□□ -1.95
PTCHD1Q96NR3 AC104332.2-201ENST00000429959 156 ntBASIC2.86□□□□□ -1.95
PTCHD1Q96NR3 AC244505.4-201ENST00000434905 287 ntBASIC2.86□□□□□ -1.95
PTCHD1Q96NR3 HMGN2P34-201ENST00000437647 269 ntBASIC2.86□□□□□ -1.95
PTCHD1Q96NR3 SSXP5-201ENST00000443473 287 ntBASIC2.86□□□□□ -1.95
PTCHD1Q96NR3 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.86□□□□□ -1.95
PTCHD1Q96NR3 RNU6-1299P-201ENST00000516316 100 ntBASIC2.86□□□□□ -1.95
PTCHD1Q96NR3 RNU6-197P-201ENST00000516680 100 ntBASIC2.86□□□□□ -1.95
PTCHD1Q96NR3 RNU6-667P-201ENST00000517186 102 ntBASIC2.86□□□□□ -1.95
PTCHD1Q96NR3 AC011604.1-201ENST00000545978 196 ntBASIC2.86□□□□□ -1.95
PTCHD1Q96NR3 RPL23AP91-201ENST00000569211 455 ntBASIC2.86□□□□□ -1.95
PTCHD1Q96NR3 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.86□□□□□ -1.95
PTCHD1Q96NR3 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.86□□□□□ -1.95
PTCHD1Q96NR3 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.85□□□□□ -1.95
PTCHD1Q96NR3 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.85□□□□□ -1.95
PTCHD1Q96NR3 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
PTCHD1Q96NR3 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
PTCHD1Q96NR3 Y_RNA.127-201ENST00000363386 109 ntBASIC2.85□□□□□ -1.95
PTCHD1Q96NR3 Y_RNA.261-201ENST00000364631 102 ntBASIC2.85□□□□□ -1.95
PTCHD1Q96NR3 RNU6-484P-201ENST00000384016 107 ntBASIC2.85□□□□□ -1.95
PTCHD1Q96NR3 MIR592-201ENST00000384959 97 ntBASIC2.85□□□□□ -1.95
PTCHD1Q96NR3 MIR627-201ENST00000384979 97 ntBASIC2.85□□□□□ -1.95
PTCHD1Q96NR3 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.85□□□□□ -1.95
PTCHD1Q96NR3 AC003685.2-201ENST00000422795 395 ntBASIC2.85□□□□□ -1.95
PTCHD1Q96NR3 AC063976.3-201ENST00000426849 329 ntBASIC2.85□□□□□ -1.95
PTCHD1Q96NR3 AC023449.1-201ENST00000454464 154 ntBASIC2.85□□□□□ -1.95
PTCHD1Q96NR3 RNU6-1146P-201ENST00000516282 102 ntBASIC2.85□□□□□ -1.95
PTCHD1Q96NR3 SNORA31.26-201ENST00000517250 137 ntBASIC2.85□□□□□ -1.95
PTCHD1Q96NR3 AC245166.1-201ENST00000521012 253 ntBASIC2.85□□□□□ -1.95
PTCHD1Q96NR3 AC007536.1-201ENST00000533382 349 ntBASIC2.85□□□□□ -1.95
PTCHD1Q96NR3 MIR3616-201ENST00000584070 92 ntBASIC2.85□□□□□ -1.95
PTCHD1Q96NR3 AC120024.3-201ENST00000603167 156 ntBASIC2.85□□□□□ -1.95
PTCHD1Q96NR3 AC005000.2-201ENST00000605468 310 ntBASIC2.85□□□□□ -1.95
PTCHD1Q96NR3 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
PTCHD1Q96NR3 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
PTCHD1Q96NR3 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.95
PTCHD1Q96NR3 RNU6-461P-201ENST00000364195 107 ntBASIC2.84□□□□□ -1.95
PTCHD1Q96NR3 RNU6-1082P-201ENST00000364574 107 ntBASIC2.84□□□□□ -1.95
PTCHD1Q96NR3 RNA5SP205-201ENST00000364653 136 ntBASIC2.84□□□□□ -1.95
PTCHD1Q96NR3 SNORD116-14-201ENST00000383894 92 ntBASIC2.84□□□□□ -1.95
PTCHD1Q96NR3 SNORD116-17-201ENST00000383929 92 ntBASIC2.84□□□□□ -1.95
PTCHD1Q96NR3 SNORA54-201ENST00000384281 123 ntBASIC2.84□□□□□ -1.95
PTCHD1Q96NR3 SNORD116-15-201ENST00000384445 92 ntBASIC2.84□□□□□ -1.95
PTCHD1Q96NR3 SNORD116-19-201ENST00000384729 92 ntBASIC2.84□□□□□ -1.95
PTCHD1Q96NR3 MIR634-201ENST00000385208 97 ntBASIC2.84□□□□□ -1.95
PTCHD1Q96NR3 RNA5SP344-201ENST00000411081 104 ntBASIC2.84□□□□□ -1.95
PTCHD1Q96NR3 CYCSP49-201ENST00000420810 319 ntBASIC2.84□□□□□ -1.95
PTCHD1Q96NR3 EEF1B2P7-201ENST00000451177 676 ntBASIC2.84□□□□□ -1.95
PTCHD1Q96NR3 S100A11P2-201ENST00000467589 312 ntBASIC2.84□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 194.6 ms