Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RNU6-417P-201ENST00000384712 107 ntBASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 MIR515-2-201ENST00000384883 83 ntBASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 MIR515-1-201ENST00000384884 83 ntBASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 MIR568-201ENST00000385036 95 ntBASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 SNORD23.1-201ENST00000408212 104 ntBASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 RNU6-1203P-201ENST00000410703 110 ntBASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 CST2P1-201ENST00000425770 87 ntBASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 AC024067.1-201ENST00000426199 223 ntBASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 AC005326.1-201ENST00000429197 123 ntBASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 MRPS10P1-201ENST00000448483 130 ntBASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 TRBVB-201ENST00000477100 408 ntBASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 AC027419.1-201ENST00000522976 328 ntBASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 SNORD53-201ENST00000579969 78 ntBASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 MIR26A1-201ENST00000362205 77 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 Y_RNA.144-201ENST00000363521 113 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 SNORA71.1-201ENST00000364523 117 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 Y_RNA.287-201ENST00000364853 94 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 Y_RNA.329-201ENST00000365209 107 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 RNU6-407P-201ENST00000365280 104 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 SNORA6-201ENST00000384033 151 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 Y_RNA.569-201ENST00000384749 103 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 SNORA53-201ENST00000391141 249 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 AL117342.1-201ENST00000404861 406 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 AC010154.1-201ENST00000425857 269 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 RPL23AP7-203ENST00000449021 469 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 MTND4LP30-201ENST00000454092 297 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 RPS27P22-201ENST00000478056 241 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 AC090255.1-201ENST00000495779 349 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 RNU2-19P-201ENST00000517288 84 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 AL161670.1-201ENST00000554348 137 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 UBL5P2-201ENST00000583788 219 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 AC006023.1-201ENST00000603944 259 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 AC037487.3-201ENST00000606668 112 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 AC022513.1-201ENST00000624512 117 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 AC245060.5-201ENST00000610778 3293 ntBASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC28AQ8IWP9 AC010615.1-201ENST00000594254 1764 ntBASIC2.21□□□□□ -2.06
CCDC28AQ8IWP9 ZNF720P1-201ENST00000562403 1939 ntBASIC2.21□□□□□ -2.06
CCDC28AQ8IWP9 RNU6-862P-201ENST00000362804 105 ntBASIC2.21□□□□□ -2.06
CCDC28AQ8IWP9 RNU1-96P-201ENST00000364163 162 ntBASIC2.21□□□□□ -2.06
CCDC28AQ8IWP9 RNU6-505P-201ENST00000384427 107 ntBASIC2.21□□□□□ -2.06
CCDC28AQ8IWP9 RNU6-710P-201ENST00000410424 105 ntBASIC2.21□□□□□ -2.06
CCDC28AQ8IWP9 RNU2-61P-201ENST00000411069 191 ntBASIC2.21□□□□□ -2.06
CCDC28AQ8IWP9 RNA5SP450-201ENST00000411206 102 ntBASIC2.21□□□□□ -2.06
CCDC28AQ8IWP9 MTND2P29-201ENST00000438595 412 ntBASIC2.21□□□□□ -2.06
CCDC28AQ8IWP9 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC28AQ8IWP9 RPS26P55-201ENST00000471178 356 ntBASIC2.21□□□□□ -2.06
CCDC28AQ8IWP9 RNA5SP20-201ENST00000515976 84 ntBASIC2.21□□□□□ -2.06
CCDC28AQ8IWP9 AC023157.2-201ENST00000540596 141 ntBASIC2.21□□□□□ -2.06
CCDC28AQ8IWP9 MIR4438-201ENST00000585271 93 ntBASIC2.21□□□□□ -2.06
CCDC28AQ8IWP9 DEFB117-201ENST00000602356 141 ntBASIC2.21□□□□□ -2.06
CCDC28AQ8IWP9 U6.73-201ENST00000619194 103 ntBASIC2.21□□□□□ -2.06
CCDC28AQ8IWP9 7SK.10-201ENST00000621414 298 ntBASIC2.21□□□□□ -2.06
CCDC28AQ8IWP9 AC012640.5-201ENST00000623897 319 ntBASIC2.21□□□□□ -2.06
CCDC28AQ8IWP9 SNORA63.1-201ENST00000362493 131 ntBASIC2.2□□□□□ -2.06
CCDC28AQ8IWP9 Y_RNA.124-201ENST00000363339 93 ntBASIC2.2□□□□□ -2.06
CCDC28AQ8IWP9 Y_RNA.136-201ENST00000363444 102 ntBASIC2.2□□□□□ -2.06
CCDC28AQ8IWP9 RNU6-463P-201ENST00000384340 107 ntBASIC2.2□□□□□ -2.06
CCDC28AQ8IWP9 RNVU1-14-201ENST00000384770 164 ntBASIC2.2□□□□□ -2.06
CCDC28AQ8IWP9 HMGN2P38-201ENST00000423806 265 ntBASIC2.2□□□□□ -2.06
CCDC28AQ8IWP9 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC28AQ8IWP9 AC055731.1-201ENST00000474387 401 ntBASIC2.2□□□□□ -2.06
CCDC28AQ8IWP9 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC2.2□□□□□ -2.06
CCDC28AQ8IWP9 AC007229.1-201ENST00000590455 412 ntBASIC2.2□□□□□ -2.06
CCDC28AQ8IWP9 AL359075.3-201ENST00000613288 217 ntBASIC2.2□□□□□ -2.06
CCDC28AQ8IWP9 U4.1-201ENST00000620349 87 ntBASIC2.2□□□□□ -2.06
CCDC28AQ8IWP9 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
CCDC28AQ8IWP9 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.2□□□□□ -2.06
CCDC28AQ8IWP9 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 MIRLET7G-201ENST00000362280 84 ntBASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 RNU1-51P-201ENST00000365345 176 ntBASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 RNU6-326P-201ENST00000365480 107 ntBASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 Y_RNA.396-201ENST00000383949 103 ntBASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 RNU6-472P-201ENST00000384299 107 ntBASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 Y_RNA.483-201ENST00000384380 101 ntBASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 MT-TW-201ENST00000387382 68 ntBASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 RNU6-1248P-201ENST00000391096 64 ntBASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 AC099677.2-201ENST00000436385 175 ntBASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 AC018634.1-201ENST00000437554 401 ntBASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC2.19□□□□□ -2.06
CCDC28AQ8IWP9 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 169.2 ms