Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RNU11-3P-201ENST00000391111 133 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 MIR1283-2-201ENST00000408621 87 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 U3.40-201ENST00000408706 208 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 RN7SKP27-201ENST00000410684 333 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 AC096920.1-201ENST00000423991 241 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 HMGN2P34-201ENST00000437647 269 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 RN7SL807P-201ENST00000470923 297 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 AL049873.1-201ENST00000480540 376 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 AC098869.1-201ENST00000481627 292 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 RNU6-966P-201ENST00000516479 104 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 AC009127.3-201ENST00000570531 403 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 MIR5680-201ENST00000577577 84 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 AC005786.1-201ENST00000588553 154 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 MIR7975-201ENST00000619350 68 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 MIR8062-201ENST00000621515 85 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 AC091953.5-201ENST00000622919 233 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 IGHVIII-44-202ENST00000636235 289 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 U6.105-201ENST00000637379 88 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 U6.104-201ENST00000637979 90 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 SNORD114-7-201ENST00000362520 77 ntBASIC2.26□□□□□ -2.05
CCDC28AQ8IWP9 snoU2_19.2-201ENST00000363024 80 ntBASIC2.26□□□□□ -2.05
CCDC28AQ8IWP9 RNU6-324P-201ENST00000363957 106 ntBASIC2.26□□□□□ -2.05
CCDC28AQ8IWP9 RNU6-102P-201ENST00000384485 104 ntBASIC2.26□□□□□ -2.05
CCDC28AQ8IWP9 MIR34B-201ENST00000385076 84 ntBASIC2.26□□□□□ -2.05
CCDC28AQ8IWP9 AL031003.1-201ENST00000404229 172 ntBASIC2.26□□□□□ -2.05
CCDC28AQ8IWP9 AL355796.1-201ENST00000406706 323 ntBASIC2.26□□□□□ -2.05
CCDC28AQ8IWP9 AC022018.1-201ENST00000430685 241 ntBASIC2.26□□□□□ -2.05
CCDC28AQ8IWP9 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC2.26□□□□□ -2.05
CCDC28AQ8IWP9 HSPE1P25-201ENST00000455484 251 ntBASIC2.26□□□□□ -2.05
CCDC28AQ8IWP9 SNORA70.12-201ENST00000516084 153 ntBASIC2.26□□□□□ -2.05
CCDC28AQ8IWP9 AP005660.1-201ENST00000522972 293 ntBASIC2.26□□□□□ -2.05
CCDC28AQ8IWP9 MIR3944-201ENST00000581277 108 ntBASIC2.26□□□□□ -2.05
CCDC28AQ8IWP9 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.26□□□□□ -2.05
CCDC28AQ8IWP9 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC28AQ8IWP9 SNORD81.1-201ENST00000363064 77 ntBASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 5S_rRNA.1-201ENST00000364415 116 ntBASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 Y_RNA.286-201ENST00000364813 102 ntBASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 RNU6-290P-201ENST00000365212 101 ntBASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 Y_RNA.361-201ENST00000365515 120 ntBASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 RNU6-301P-201ENST00000384277 107 ntBASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 MIR597-201ENST00000384968 97 ntBASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 MIR873-201ENST00000401120 77 ntBASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 MIR1302-6-201ENST00000408466 90 ntBASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 POLR2KP2-201ENST00000438155 177 ntBASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 RPL23AP3-201ENST00000453844 468 ntBASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 AC003982.1-202ENST00000469928 248 ntBASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 RPL7P49-201ENST00000471402 708 ntBASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 HMGN1P10-201ENST00000474557 553 ntBASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 AC079804.2-201ENST00000490376 200 ntBASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 AL137100.2-201ENST00000555786 315 ntBASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 MIR1254-2-201ENST00000579553 63 ntBASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 AC078899.2-201ENST00000595282 212 ntBASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 AC127459.3-201ENST00000624328 466 ntBASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 MIR203B-201ENST00000636080 86 ntBASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 MIR338-201ENST00000636369 67 ntBASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC28AQ8IWP9 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 MTND5P6-201ENST00000422338 1798 ntBASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 SNORA27.1-201ENST00000362604 124 ntBASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 Y_RNA.84-201ENST00000363011 104 ntBASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 RNA5SP267-201ENST00000364893 126 ntBASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 Y_RNA.461-201ENST00000384263 103 ntBASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 Y_RNA.556-201ENST00000384677 113 ntBASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 MIR23B-201ENST00000384832 97 ntBASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 MIR215-201ENST00000384858 110 ntBASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 SNORA11.4-201ENST00000408823 129 ntBASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 RNA5SP120-201ENST00000410900 112 ntBASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 HMGN2P3-201ENST00000433603 273 ntBASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 AL121890.1-201ENST00000435457 205 ntBASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 HMGN2P5-201ENST00000436882 273 ntBASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 YWHAEP4-201ENST00000505390 198 ntBASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 RNU6-436P-201ENST00000516171 114 ntBASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 RNU6-570P-201ENST00000517051 105 ntBASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 MIR4429-201ENST00000580105 73 ntBASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 CENPCP1-201ENST00000533085 2578 ntBASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.24□□□□□ -2.05
CCDC28AQ8IWP9 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 AL596028.1-201ENST00000326971 197 ntBASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 MIR22-201ENST00000362190 85 ntBASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 RNU6-525P-201ENST00000363685 104 ntBASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 Y_RNA.376-201ENST00000365638 108 ntBASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 Y_RNA.383-201ENST00000383855 97 ntBASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 RNU4-52P-201ENST00000384209 138 ntBASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 RNU6-196P-201ENST00000384315 107 ntBASIC2.23□□□□□ -2.05
CCDC28AQ8IWP9 Y_RNA.541-201ENST00000384640 113 ntBASIC2.23□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 160.8 ms