Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.31□□□□□ -2.04
CCDC28AQ8IWP9 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2.31□□□□□ -2.04
CCDC28AQ8IWP9 MIR3169-201ENST00000578032 83 ntBASIC2.31□□□□□ -2.04
CCDC28AQ8IWP9 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
CCDC28AQ8IWP9 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.3□□□□□ -2.04
CCDC28AQ8IWP9 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC28AQ8IWP9 Y_RNA.26-201ENST00000362539 101 ntBASIC2.3□□□□□ -2.04
CCDC28AQ8IWP9 Y_RNA.243-201ENST00000364481 109 ntBASIC2.3□□□□□ -2.04
CCDC28AQ8IWP9 MIR490-201ENST00000384865 128 ntBASIC2.3□□□□□ -2.04
CCDC28AQ8IWP9 MIR1253-201ENST00000408273 105 ntBASIC2.3□□□□□ -2.04
CCDC28AQ8IWP9 RNU4-30P-201ENST00000410245 143 ntBASIC2.3□□□□□ -2.04
CCDC28AQ8IWP9 AC060773.1-201ENST00000421698 310 ntBASIC2.3□□□□□ -2.04
CCDC28AQ8IWP9 BX510359.4-201ENST00000423750 193 ntBASIC2.3□□□□□ -2.04
CCDC28AQ8IWP9 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.3□□□□□ -2.04
CCDC28AQ8IWP9 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.3□□□□□ -2.04
CCDC28AQ8IWP9 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC2.3□□□□□ -2.04
CCDC28AQ8IWP9 AC109925.1-201ENST00000478069 331 ntBASIC2.3□□□□□ -2.04
CCDC28AQ8IWP9 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
CCDC28AQ8IWP9 AC011406.1-201ENST00000512440 370 ntBASIC2.3□□□□□ -2.04
CCDC28AQ8IWP9 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.3□□□□□ -2.04
CCDC28AQ8IWP9 AC008749.1-201ENST00000597650 306 ntBASIC2.3□□□□□ -2.04
CCDC28AQ8IWP9 AL353149.1-201ENST00000610667 244 ntBASIC2.3□□□□□ -2.04
CCDC28AQ8IWP9 MIR6840-201ENST00000611937 71 ntBASIC2.3□□□□□ -2.04
CCDC28AQ8IWP9 AC012314.7-201ENST00000619693 93 ntBASIC2.3□□□□□ -2.04
CCDC28AQ8IWP9 AC007318.2-201ENST00000620999 243 ntBASIC2.3□□□□□ -2.04
CCDC28AQ8IWP9 U6.115-201ENST00000636045 103 ntBASIC2.3□□□□□ -2.04
CCDC28AQ8IWP9 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 AC092593.1-201ENST00000515413 1815 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 Y_RNA.47-201ENST00000362697 108 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 MIR670-201ENST00000390142 98 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 Y_RNA.581-201ENST00000391017 97 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 RNA5SP465-201ENST00000391195 109 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 MIR1302-3-201ENST00000408128 138 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 Y_RNA.602-201ENST00000410535 92 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 RNU6-1199P-201ENST00000411249 104 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 RPL21P38-201ENST00000418090 167 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 MTCYBP9-201ENST00000431021 303 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 IPO7P1-201ENST00000442031 636 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 ATP5J2P3-201ENST00000451550 258 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 SNORD65B-201ENST00000459126 73 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 AC010598.1-201ENST00000510378 103 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 RNU7-193P-201ENST00000516723 65 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 SUMO2P18-201ENST00000518873 252 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 AC005828.6-201ENST00000606610 232 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 U2.15-201ENST00000611544 191 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 U2.16-201ENST00000613119 191 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 U2.12-201ENST00000613778 191 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 U2.20-201ENST00000613956 192 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 U2.9-201ENST00000615427 191 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 U2.11-201ENST00000616345 191 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 U2.2-201ENST00000616535 191 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 U2.3-201ENST00000617785 191 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 U2.19-201ENST00000618602 191 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 RNU2-1-201ENST00000618664 191 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 U2.6-201ENST00000619225 191 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 U2.5-201ENST00000619465 191 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 U2.10-201ENST00000620268 191 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 MIR6075-201ENST00000620782 95 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 AC006435.5-201ENST00000624486 112 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 MIR622-201ENST00000638396 96 ntBASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
CCDC28AQ8IWP9 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
CCDC28AQ8IWP9 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.04
CCDC28AQ8IWP9 RNU4-90P-201ENST00000362773 141 ntBASIC2.28□□□□□ -2.04
CCDC28AQ8IWP9 SNORD115-30-201ENST00000364117 82 ntBASIC2.28□□□□□ -2.04
CCDC28AQ8IWP9 SNORA38.1-201ENST00000364172 131 ntBASIC2.28□□□□□ -2.04
CCDC28AQ8IWP9 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC2.28□□□□□ -2.04
CCDC28AQ8IWP9 SNORA7.4-201ENST00000384249 137 ntBASIC2.28□□□□□ -2.04
CCDC28AQ8IWP9 SNORA48.7-201ENST00000391302 135 ntBASIC2.28□□□□□ -2.04
CCDC28AQ8IWP9 AL139132.1-201ENST00000431587 344 ntBASIC2.28□□□□□ -2.04
CCDC28AQ8IWP9 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.28□□□□□ -2.04
CCDC28AQ8IWP9 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC28AQ8IWP9 RN7SL863P-201ENST00000462370 296 ntBASIC2.28□□□□□ -2.04
CCDC28AQ8IWP9 HMGB3P17-201ENST00000504195 649 ntBASIC2.28□□□□□ -2.04
CCDC28AQ8IWP9 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.28□□□□□ -2.04
CCDC28AQ8IWP9 RNU6-496P-201ENST00000516145 99 ntBASIC2.28□□□□□ -2.04
CCDC28AQ8IWP9 RNU6-1041P-201ENST00000516254 102 ntBASIC2.28□□□□□ -2.04
CCDC28AQ8IWP9 SNORA31.25-201ENST00000517242 134 ntBASIC2.28□□□□□ -2.04
CCDC28AQ8IWP9 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC28AQ8IWP9 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.28□□□□□ -2.04
CCDC28AQ8IWP9 MIR4529-201ENST00000578110 78 ntBASIC2.28□□□□□ -2.04
CCDC28AQ8IWP9 SDR42E1P4-201ENST00000620894 481 ntBASIC2.28□□□□□ -2.04
CCDC28AQ8IWP9 TEX41-300ENST00000631048 69 ntTSL 5 BASIC2.28□□□□□ -2.04
CCDC28AQ8IWP9 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC2.28□□□□□ -2.05
CCDC28AQ8IWP9 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.05
CCDC28AQ8IWP9 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.05
CCDC28AQ8IWP9 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 snoU2-30.2-201ENST00000362805 70 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 RNU6-271P-201ENST00000363858 105 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 Y_RNA.222-201ENST00000364264 102 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 SNORA20B-201ENST00000384220 132 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 Y_RNA.512-201ENST00000384518 102 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 MIR183-201ENST00000384958 110 ntBASIC2.27□□□□□ -2.05
CCDC28AQ8IWP9 SNORD67-201ENST00000390833 111 ntBASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 174.4 ms