Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC008269.2-201ENST00000561915 1105 ntBASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 MIR3605-201ENST00000583214 100 ntBASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 AC006380.1-201ENST00000603598 186 ntBASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 YPEL5P2-201ENST00000605553 359 ntBASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 AL162730.1-201ENST00000605734 292 ntBASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 AC022441.3-201ENST00000605737 136 ntBASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 AC007336.1-201ENST00000576365 3828 ntBASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.34□□□□□ -2.03
CCDC28AQ8IWP9 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.34□□□□□ -2.03
CCDC28AQ8IWP9 Y_RNA.149-201ENST00000363558 117 ntBASIC2.34□□□□□ -2.03
CCDC28AQ8IWP9 RNU6-454P-201ENST00000364292 107 ntBASIC2.34□□□□□ -2.03
CCDC28AQ8IWP9 SNORD114-6-201ENST00000364393 72 ntBASIC2.34□□□□□ -2.03
CCDC28AQ8IWP9 RNU6-1164P-201ENST00000364428 107 ntBASIC2.34□□□□□ -2.03
CCDC28AQ8IWP9 RNA5SP72-201ENST00000364442 117 ntBASIC2.34□□□□□ -2.03
CCDC28AQ8IWP9 RNU6-713P-201ENST00000384761 107 ntBASIC2.34□□□□□ -2.03
CCDC28AQ8IWP9 Y_RNA.574-201ENST00000384766 95 ntBASIC2.34□□□□□ -2.03
CCDC28AQ8IWP9 RNU2-20P-201ENST00000410425 191 ntBASIC2.34□□□□□ -2.03
CCDC28AQ8IWP9 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.34□□□□□ -2.03
CCDC28AQ8IWP9 AC025750.2-201ENST00000442609 450 ntBASIC2.34□□□□□ -2.03
CCDC28AQ8IWP9 AL109933.2-201ENST00000452651 260 ntBASIC2.34□□□□□ -2.03
CCDC28AQ8IWP9 PRSS3P4-201ENST00000453323 162 ntBASIC2.34□□□□□ -2.03
CCDC28AQ8IWP9 AP001486.1-201ENST00000463339 476 ntBASIC2.34□□□□□ -2.03
CCDC28AQ8IWP9 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.34□□□□□ -2.03
CCDC28AQ8IWP9 RNU7-110P-201ENST00000516891 62 ntBASIC2.34□□□□□ -2.03
CCDC28AQ8IWP9 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.34□□□□□ -2.03
CCDC28AQ8IWP9 AL590240.4-201ENST00000616908 390 ntBASIC2.34□□□□□ -2.03
CCDC28AQ8IWP9 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC2.34□□□□□ -2.03
CCDC28AQ8IWP9 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 RNU1-58P-201ENST00000362413 163 ntBASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 Y_RNA.101-201ENST00000363154 102 ntBASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 RNU6-23P-201ENST00000363283 107 ntBASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 SNORA3A-201ENST00000364113 130 ntBASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 RNU1-33P-201ENST00000364249 162 ntBASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 RNU6-21P-201ENST00000384710 107 ntBASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 RNA5SP210-201ENST00000391034 120 ntBASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 RNU2-54P-201ENST00000410299 190 ntBASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 RPL23AP36-201ENST00000413895 458 ntBASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 AL353689.1-201ENST00000438895 199 ntBASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 DYNLT3P2-201ENST00000442517 295 ntBASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 SUMO1P2-201ENST00000452524 304 ntBASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 AC005042.3-201ENST00000453230 174 ntBASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 LINC01399-202ENST00000458450 244 ntBASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 RNU2-12P-201ENST00000517216 168 ntBASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 AC096577.2-201ENST00000611455 153 ntBASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 AC084757.4-201ENST00000616350 526 ntBASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 AC006001.4-201ENST00000622243 395 ntBASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 AL159152.1-201ENST00000635019 2587 ntBASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 AC005336.3-201ENST00000623833 2679 ntBASIC2.33□□□□□ -2.04
CCDC28AQ8IWP9 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 AC073325.2-201ENST00000339545 159 ntBASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 Y_RNA.105-201ENST00000363182 111 ntBASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 Y_RNA.133-201ENST00000363428 110 ntBASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 RNA5SP493-201ENST00000364115 91 ntBASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 RNU6-1240P-201ENST00000365155 104 ntBASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 Y_RNA.446-201ENST00000384178 104 ntBASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 SNORD15B-201ENST00000384714 146 ntBASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 MIR512-1-201ENST00000384913 84 ntBASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 HMGN2P39-201ENST00000398005 273 ntBASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 RNU6-121P-201ENST00000410525 99 ntBASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 AC009963.1-201ENST00000417265 157 ntBASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 MTND3P2-201ENST00000438452 342 ntBASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 RN7SL636P-201ENST00000497504 294 ntBASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 SEPT14P8-201ENST00000508026 178 ntBASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 RNU6-155P-201ENST00000516347 100 ntBASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 SNORA67.7-201ENST00000516664 135 ntBASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 AP003733.2-201ENST00000529409 171 ntBASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 SNORD113-5-201ENST00000607261 78 ntBASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 AC245884.12-201ENST00000615364 59 ntBASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC28AQ8IWP9 Y_RNA.64-201ENST00000362845 102 ntBASIC2.31□□□□□ -2.04
CCDC28AQ8IWP9 RNU6-238P-201ENST00000363313 106 ntBASIC2.31□□□□□ -2.04
CCDC28AQ8IWP9 SNORD113-8-201ENST00000363497 74 ntBASIC2.31□□□□□ -2.04
CCDC28AQ8IWP9 RNU6-806P-201ENST00000365147 105 ntBASIC2.31□□□□□ -2.04
CCDC28AQ8IWP9 Y_RNA.331-201ENST00000365267 102 ntBASIC2.31□□□□□ -2.04
CCDC28AQ8IWP9 MIR518A2-201ENST00000384966 87 ntBASIC2.31□□□□□ -2.04
CCDC28AQ8IWP9 MIR524-201ENST00000385242 87 ntBASIC2.31□□□□□ -2.04
CCDC28AQ8IWP9 RNU4-47P-201ENST00000410876 114 ntBASIC2.31□□□□□ -2.04
CCDC28AQ8IWP9 AC016909.1-201ENST00000415916 166 ntBASIC2.31□□□□□ -2.04
CCDC28AQ8IWP9 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
CCDC28AQ8IWP9 RPS12P2-201ENST00000439728 269 ntBASIC2.31□□□□□ -2.04
CCDC28AQ8IWP9 MTCO2P24-201ENST00000515611 426 ntBASIC2.31□□□□□ -2.04
CCDC28AQ8IWP9 RNU6-1146P-201ENST00000516282 102 ntBASIC2.31□□□□□ -2.04
CCDC28AQ8IWP9 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 190.1 ms