Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 MIR586-201ENST00000385035 97 ntBASIC1.55□□□□□ -2.16
CCDC43Q96MW1 Y_RNA.615-201ENST00000410769 117 ntBASIC1.55□□□□□ -2.16
CCDC43Q96MW1 AL161935.2-201ENST00000414627 60 ntBASIC1.55□□□□□ -2.16
CCDC43Q96MW1 HMGN2P34-201ENST00000437647 269 ntBASIC1.55□□□□□ -2.16
CCDC43Q96MW1 AL353572.1-201ENST00000442490 417 ntBASIC1.55□□□□□ -2.16
CCDC43Q96MW1 RNU7-95P-201ENST00000459222 64 ntBASIC1.55□□□□□ -2.16
CCDC43Q96MW1 AL163540.1-201ENST00000485382 386 ntBASIC1.55□□□□□ -2.16
CCDC43Q96MW1 AC099513.1-201ENST00000490423 301 ntBASIC1.55□□□□□ -2.16
CCDC43Q96MW1 AC019235.1-201ENST00000503847 207 ntBASIC1.55□□□□□ -2.16
CCDC43Q96MW1 AC019176.1-201ENST00000518519 225 ntBASIC1.55□□□□□ -2.16
CCDC43Q96MW1 AC016957.1-201ENST00000534895 309 ntBASIC1.55□□□□□ -2.16
CCDC43Q96MW1 MIR4421-201ENST00000578133 69 ntBASIC1.55□□□□□ -2.16
CCDC43Q96MW1 AC023043.2-201ENST00000589678 1026 ntBASIC1.55□□□□□ -2.16
CCDC43Q96MW1 AL157834.3-201ENST00000615543 103 ntBASIC1.55□□□□□ -2.16
CCDC43Q96MW1 MIR7974-201ENST00000615835 79 ntBASIC1.55□□□□□ -2.16
CCDC43Q96MW1 AC137590.2-201ENST00000619709 240 ntBASIC1.55□□□□□ -2.16
CCDC43Q96MW1 AL121890.5-201ENST00000620848 304 ntBASIC1.55□□□□□ -2.16
CCDC43Q96MW1 RNU1-62P-201ENST00000362599 164 ntBASIC1.54□□□□□ -2.16
CCDC43Q96MW1 SNORA7.1-201ENST00000363750 139 ntBASIC1.54□□□□□ -2.16
CCDC43Q96MW1 SNORD116-2-201ENST00000384274 95 ntBASIC1.54□□□□□ -2.16
CCDC43Q96MW1 SNORA67.2-201ENST00000384300 149 ntBASIC1.54□□□□□ -2.16
CCDC43Q96MW1 SNORD116-6-201ENST00000384711 96 ntBASIC1.54□□□□□ -2.16
CCDC43Q96MW1 AL590002.1-201ENST00000406554 418 ntBASIC1.54□□□□□ -2.16
CCDC43Q96MW1 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.54□□□□□ -2.16
CCDC43Q96MW1 MIR320B2-201ENST00000408479 138 ntBASIC1.54□□□□□ -2.16
CCDC43Q96MW1 RN7SKP51-201ENST00000410781 304 ntBASIC1.54□□□□□ -2.16
CCDC43Q96MW1 RNU6-57P-201ENST00000411348 103 ntBASIC1.54□□□□□ -2.16
CCDC43Q96MW1 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.54□□□□□ -2.16
CCDC43Q96MW1 RPS27P16-201ENST00000425758 201 ntBASIC1.54□□□□□ -2.16
CCDC43Q96MW1 NDUFA5P4-201ENST00000436704 385 ntBASIC1.54□□□□□ -2.16
CCDC43Q96MW1 AC027119.1-201ENST00000440877 241 ntBASIC1.54□□□□□ -2.16
CCDC43Q96MW1 MTND1P29-201ENST00000448112 647 ntBASIC1.54□□□□□ -2.16
CCDC43Q96MW1 AC074290.1-201ENST00000448883 135 ntBASIC1.54□□□□□ -2.16
CCDC43Q96MW1 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.54□□□□□ -2.16
CCDC43Q96MW1 AC108729.3-201ENST00000513484 108 ntBASIC1.54□□□□□ -2.16
CCDC43Q96MW1 RNU1-117P-201ENST00000517041 158 ntBASIC1.54□□□□□ -2.16
CCDC43Q96MW1 SUB1P3-201ENST00000564581 315 ntBASIC1.54□□□□□ -2.16
CCDC43Q96MW1 AP003465.2-201ENST00000602571 373 ntBASIC1.54□□□□□ -2.16
CCDC43Q96MW1 PRR13P7-201ENST00000605538 430 ntBASIC1.54□□□□□ -2.16
CCDC43Q96MW1 AC092954.2-201ENST00000609103 430 ntBASIC1.54□□□□□ -2.16
CCDC43Q96MW1 AL161722.3-201ENST00000605789 2983 ntBASIC1.54□□□□□ -2.16
CCDC43Q96MW1 SNORD50.1-201ENST00000362987 71 ntBASIC1.53□□□□□ -2.16
CCDC43Q96MW1 Y_RNA.287-201ENST00000364853 94 ntBASIC1.53□□□□□ -2.16
CCDC43Q96MW1 RNU6-128P-201ENST00000383976 107 ntBASIC1.53□□□□□ -2.16
CCDC43Q96MW1 MRPL35P1-201ENST00000404272 572 ntBASIC1.53□□□□□ -2.16
CCDC43Q96MW1 MIR1253-201ENST00000408273 105 ntBASIC1.53□□□□□ -2.16
CCDC43Q96MW1 Y_RNA.595-201ENST00000410403 105 ntBASIC1.53□□□□□ -2.16
CCDC43Q96MW1 COX6CP10-201ENST00000416832 224 ntBASIC1.53□□□□□ -2.16
CCDC43Q96MW1 RPL30P13-201ENST00000418873 348 ntBASIC1.53□□□□□ -2.16
CCDC43Q96MW1 Y_RNA.638-201ENST00000459374 113 ntBASIC1.53□□□□□ -2.16
CCDC43Q96MW1 RNU6-1146P-201ENST00000516282 102 ntBASIC1.53□□□□□ -2.16
CCDC43Q96MW1 ZNF519P2-201ENST00000557032 169 ntBASIC1.53□□□□□ -2.16
CCDC43Q96MW1 AC015688.6-201ENST00000577737 104 ntBASIC1.53□□□□□ -2.16
CCDC43Q96MW1 PIGPP4-201ENST00000584447 307 ntBASIC1.53□□□□□ -2.16
CCDC43Q96MW1 NBR2-204ENST00000587322 63 ntBASIC1.53□□□□□ -2.16
CCDC43Q96MW1 AL162413.1-201ENST00000603198 110 ntBASIC1.53□□□□□ -2.16
CCDC43Q96MW1 DISC2.1-201ENST00000612827 205 ntBASIC1.53□□□□□ -2.16
CCDC43Q96MW1 AL078596.1-201ENST00000624856 447 ntBASIC1.53□□□□□ -2.16
CCDC43Q96MW1 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.53□□□□□ -2.16
CCDC43Q96MW1 Y_RNA.338-201ENST00000365320 114 ntBASIC1.52□□□□□ -2.17
CCDC43Q96MW1 MIR194-1-201ENST00000384892 85 ntBASIC1.52□□□□□ -2.17
CCDC43Q96MW1 RNA5SP467-201ENST00000391274 118 ntBASIC1.52□□□□□ -2.17
CCDC43Q96MW1 RNU2-16P-201ENST00000410712 136 ntBASIC1.52□□□□□ -2.17
CCDC43Q96MW1 AP1B1P2-201ENST00000416196 106 ntBASIC1.52□□□□□ -2.17
CCDC43Q96MW1 PCMTD1P1-201ENST00000455560 355 ntBASIC1.52□□□□□ -2.17
CCDC43Q96MW1 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC43Q96MW1 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC43Q96MW1 Y_RNA.665-201ENST00000516177 98 ntBASIC1.52□□□□□ -2.17
CCDC43Q96MW1 MIR3937-201ENST00000580135 106 ntBASIC1.52□□□□□ -2.17
CCDC43Q96MW1 AC097065.2-201ENST00000608159 533 ntBASIC1.52□□□□□ -2.17
CCDC43Q96MW1 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.52□□□□□ -2.17
CCDC43Q96MW1 MTND5P35-201ENST00000557537 1720 ntBASIC1.52□□□□□ -2.17
CCDC43Q96MW1 MIR26B-201ENST00000362251 77 ntBASIC1.51□□□□□ -2.17
CCDC43Q96MW1 SNORA72.2-201ENST00000365028 127 ntBASIC1.51□□□□□ -2.17
CCDC43Q96MW1 MIR32-201ENST00000384965 70 ntBASIC1.51□□□□□ -2.17
CCDC43Q96MW1 RNU6-908P-201ENST00000410160 94 ntBASIC1.51□□□□□ -2.17
CCDC43Q96MW1 Z82205.1-201ENST00000428456 297 ntBASIC1.51□□□□□ -2.17
CCDC43Q96MW1 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC1.51□□□□□ -2.17
CCDC43Q96MW1 RPS29P23-201ENST00000458635 123 ntBASIC1.51□□□□□ -2.17
CCDC43Q96MW1 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.51□□□□□ -2.17
CCDC43Q96MW1 MIR4709-201ENST00000577272 72 ntBASIC1.51□□□□□ -2.17
CCDC43Q96MW1 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.51□□□□□ -2.17
CCDC43Q96MW1 snoU13.31-201ENST00000607291 104 ntBASIC1.51□□□□□ -2.17
CCDC43Q96MW1 AL078604.3-201ENST00000615580 211 ntBASIC1.51□□□□□ -2.17
CCDC43Q96MW1 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.51□□□□□ -2.17
CCDC43Q96MW1 AC099654.12-201ENST00000639868 649 ntBASIC1.51□□□□□ -2.17
CCDC43Q96MW1 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.51□□□□□ -2.17
CCDC43Q96MW1 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.51□□□□□ -2.17
CCDC43Q96MW1 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.5□□□□□ -2.17
CCDC43Q96MW1 SNORD33-201ENST00000362761 85 ntBASIC1.5□□□□□ -2.17
CCDC43Q96MW1 RNU6-95P-201ENST00000384697 107 ntBASIC1.5□□□□□ -2.17
CCDC43Q96MW1 AC004965.1-201ENST00000413033 213 ntBASIC1.5□□□□□ -2.17
CCDC43Q96MW1 RPL23AP36-201ENST00000413895 458 ntBASIC1.5□□□□□ -2.17
CCDC43Q96MW1 AC016909.1-201ENST00000415916 166 ntBASIC1.5□□□□□ -2.17
CCDC43Q96MW1 AL590632.1-201ENST00000424289 371 ntBASIC1.5□□□□□ -2.17
CCDC43Q96MW1 SDAD1P3-201ENST00000427380 333 ntBASIC1.5□□□□□ -2.17
CCDC43Q96MW1 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.5□□□□□ -2.17
CCDC43Q96MW1 Z82188.1-201ENST00000436709 154 ntBASIC1.5□□□□□ -2.17
CCDC43Q96MW1 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.5□□□□□ -2.17
CCDC43Q96MW1 AC079354.2-201ENST00000453523 154 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 300.2 ms