Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC2.39□□□□□ -2.03
CCDC28AQ8IWP9 AC034105.4-201ENST00000568304 277 ntBASIC2.39□□□□□ -2.03
CCDC28AQ8IWP9 MIR4423-201ENST00000580922 80 ntBASIC2.39□□□□□ -2.03
CCDC28AQ8IWP9 PRR13P7-201ENST00000605538 430 ntBASIC2.39□□□□□ -2.03
CCDC28AQ8IWP9 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC2.39□□□□□ -2.03
CCDC28AQ8IWP9 AC013412.1-201ENST00000610687 192 ntBASIC2.39□□□□□ -2.03
CCDC28AQ8IWP9 AC022202.1-201ENST00000613515 211 ntBASIC2.39□□□□□ -2.03
CCDC28AQ8IWP9 AC039056.2-201ENST00000622261 511 ntBASIC2.39□□□□□ -2.03
CCDC28AQ8IWP9 AC130454.1-201ENST00000622948 401 ntBASIC2.39□□□□□ -2.03
CCDC28AQ8IWP9 AC012442.3-202ENST00000636742 206 ntBASIC2.39□□□□□ -2.03
CCDC28AQ8IWP9 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
CCDC28AQ8IWP9 MIR340-201ENST00000362125 95 ntBASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 RNU1-35P-201ENST00000362782 153 ntBASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 Y_RNA.214-201ENST00000364201 112 ntBASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 MIR7-3-201ENST00000384898 110 ntBASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 MIR134-201ENST00000385258 73 ntBASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 SNORA40.19-201ENST00000390846 128 ntBASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 snosnR66.1-201ENST00000391095 99 ntBASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 RPL21P1-201ENST00000399532 476 ntBASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 AC007064.1-201ENST00000412238 351 ntBASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 ELOCP20-201ENST00000422460 345 ntBASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 AC006028.1-201ENST00000438379 402 ntBASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 AL139109.1-201ENST00000455491 297 ntBASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 RNU1-131P-201ENST00000458943 161 ntBASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 MTATP8P1-201ENST00000467115 207 ntBASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 RNY3P15-201ENST00000516297 97 ntBASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 RNU6-856P-201ENST00000516959 98 ntBASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 AP002001.1-203ENST00000534002 267 ntBASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 SNORD14A-201ENST00000606526 91 ntBASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 AC004467.1-201ENST00000615678 330 ntBASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 MIR376A1-201ENST00000616574 68 ntBASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 AP006437.1-201ENST00000641440 3685 ntBASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC2.38□□□□□ -2.03
CCDC28AQ8IWP9 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 RNU6-770P-201ENST00000363929 105 ntBASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 RNU6-937P-201ENST00000384325 106 ntBASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 Y_RNA.570-201ENST00000384750 101 ntBASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 MIR449B-201ENST00000384995 97 ntBASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 AC008134.1-201ENST00000420943 193 ntBASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 AL358176.2-201ENST00000425769 204 ntBASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 AL731563.1-201ENST00000442202 214 ntBASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 RNU6-635P-201ENST00000516651 102 ntBASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 AC121758.2-201ENST00000553271 193 ntBASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 AC136932.1-201ENST00000574771 208 ntBASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 MIR3684-201ENST00000579779 74 ntBASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 AC091932.3-201ENST00000624223 323 ntBASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC28AQ8IWP9 AL035425.3-201ENST00000564206 4996 ntBASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 Y_RNA.19-201ENST00000362462 99 ntBASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 RNU6-1266P-201ENST00000362794 105 ntBASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 SNORD115-3-201ENST00000363100 82 ntBASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 RNU6-1105P-201ENST00000384774 107 ntBASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 RNU6-1109P-201ENST00000391187 107 ntBASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 RNA5SP270-201ENST00000411361 118 ntBASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 AC011753.1-201ENST00000451001 220 ntBASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 RPS29P26-201ENST00000477483 171 ntBASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 RN7SL293P-201ENST00000481765 281 ntBASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 HMGB3P3-201ENST00000510526 400 ntBASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 AC055872.1-201ENST00000570978 278 ntBASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 MIR4300-201ENST00000581016 96 ntBASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 MIR5694-201ENST00000581190 76 ntBASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 MIR3158-1-201ENST00000583596 81 ntBASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 AC011373.1-201ENST00000607270 237 ntBASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC28AQ8IWP9 RNU6-1309P-201ENST00000363305 108 ntBASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 Y_RNA.176-201ENST00000363815 109 ntBASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 RNU6-1175P-201ENST00000365200 107 ntBASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 SNORD115-46-201ENST00000390982 71 ntBASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 SNORA84-201ENST00000459229 133 ntBASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 AC025465.3-201ENST00000510570 311 ntBASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 AC025647.1-201ENST00000517879 253 ntBASIC2.35□□□□□ -2.03
CCDC28AQ8IWP9 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 174.8 ms